Bhi11G002441 (gene) Wax gourd

NameBhi11G002441
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionSaccharopine dehydrogenase
Locationchr11 : 79276577 .. 79276864 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAGGACCTCAACAAGTTCTTTCCACCCCTCTCTACGATCTCATAATCTTAGGAGCCACTGGTTTCACAGGCAAGTACGTTGTCCGTGAAGCTCTCAAATTCCTCAACCCATCTCCTTCTTCTCCTCTCAAATCTCTCGCTCTCGCCGGTCGAGACCACGCCAAACTCACCAAAGCCCTCAAATGGACAGCTTCATCCCCTGCTCCGCCGCCCATTCCCCTCCTTATTTCCAATATCGCCGAACCCAATCCATTCACCACCTCTGCTCCCAAACCAAGCTGA

mRNA sequence

ATGAGTGGAGGACCTCAACAAGTTCTTTCCACCCCTCTCTACGATCTCATAATCTTAGGAGCCACTGGTTTCACAGGCAAGTACGTTGTCCGTGAAGCTCTCAAATTCCTCAACCCATCTCCTTCTTCTCCTCTCAAATCTCTCGCTCTCGCCGGTCGAGACCACGCCAAACTCACCAAAGCCCTCAAATGGACAGCTTCATCCCCTGCTCCGCCGCCCATTCCCCTCCTTATTTCCAATATCGCCGAACCCAATCCATTCACCACCTCTGCTCCCAAACCAAGCTGA

Coding sequence (CDS)

ATGAGTGGAGGACCTCAACAAGTTCTTTCCACCCCTCTCTACGATCTCATAATCTTAGGAGCCACTGGTTTCACAGGCAAGTACGTTGTCCGTGAAGCTCTCAAATTCCTCAACCCATCTCCTTCTTCTCCTCTCAAATCTCTCGCTCTCGCCGGTCGAGACCACGCCAAACTCACCAAAGCCCTCAAATGGACAGCTTCATCCCCTGCTCCGCCGCCCATTCCCCTCCTTATTTCCAATATCGCCGAACCCAATCCATTCACCACCTCTGCTCCCAAACCAAGCTGA

Protein sequence

MSGGPQQVLSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASSPAPPPIPLLISNIAEPNPFTTSAPKPS
BLAST of Bhi11G002441 vs. Swiss-Prot
Match: sp|Q8LGI2|SCPDL_ARATH (Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana OX=3702 GN=At5g39410 PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-17
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 12 PLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASSPAP 71
          P+YD++ILGA+GFTGKYVVREALKFL    SSPLKSLALAGR+  +LT++L+W A+ P P
Sbjct: 9  PVYDMVILGASGFTGKYVVREALKFLQTPSSSPLKSLALAGRNPTRLTQSLEW-AARPNP 68

Query: 72 PP--IPLLISNIAEPN 86
          PP  + +L ++ ++P+
Sbjct: 69 PPSSVAILTADTSDPD 83

BLAST of Bhi11G002441 vs. TAIR10
Match: AT5G39410.1 (Saccharopine dehydrogenase )

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 12 PLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASSPAP 71
          P+YD++ILGA+GFTGKYVVREALKFL    SSPLKSLALAGR+  +LT++L+W A+ P P
Sbjct: 9  PVYDMVILGASGFTGKYVVREALKFLQTPSSSPLKSLALAGRNPTRLTQSLEW-AARPNP 68

Query: 72 PP--IPLLISNIAEPN 86
          PP  + +L ++ ++P+
Sbjct: 69 PPSSVAILTADTSDPD 83

BLAST of Bhi11G002441 vs. TrEMBL
Match: tr|A0A1S3B7Z4|A0A1S3B7Z4_CUCME (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Cucumis melo OX=3656 GN=LOC103487170 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.5e-29
Identity = 71/85 (83.53%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 1  MSGGPQQV-LSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLT 60
          MSGGPQQV LSTP YDLIILGATGFTGKY+VREALKFLNPS SSPLKSLALAGRDHAKLT
Sbjct: 1  MSGGPQQVLLSTPPYDLIILGATGFTGKYIVREALKFLNPSSSSPLKSLALAGRDHAKLT 60

Query: 61 KALKWTASSPAPPPIPLLISNIAEP 85
           ALKW A     PPIPLLIS+I +P
Sbjct: 61 NALKWAAHPLPSPPIPLLISDITKP 85

BLAST of Bhi11G002441 vs. TrEMBL
Match: tr|A0A0A0LF70|A0A0A0LF70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824740 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-20
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 5   PQQVLSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKW 64
           P  +  TP YDLIILGATGFTGKYVVREAL+FLN  PSSPLKS ALAGR+  KLT+ L+W
Sbjct: 31  PSSMEGTP-YDLIILGATGFTGKYVVREALRFLN--PSSPLKSFALAGRNLTKLTQTLQW 90

Query: 65  TASSPAPPPIPLLISNIAEP 85
            A   +PPPIPLLI++IA+P
Sbjct: 91  AAHPHSPPPIPLLIADIADP 107

BLAST of Bhi11G002441 vs. TrEMBL
Match: tr|A0A1S3B8K4|A0A1S3B8K4_CUCME (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Cucumis melo OX=3656 GN=LOC103486968 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0

Query: 12 PLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASSPAP 71
          P YDLIILGATGFTGKYVVREALKFLN  PSSPLKS ALAGR+  KLT+ L+W A   +P
Sbjct: 4  PPYDLIILGATGFTGKYVVREALKFLN--PSSPLKSFALAGRNLTKLTQTLQWAAHPHSP 63

Query: 72 PPIPLLISNIAEP 85
          PPIP LI++IA+P
Sbjct: 64 PPIPFLIADIADP 74

BLAST of Bhi11G002441 vs. TrEMBL
Match: tr|W9QQU6|W9QQU6_9ROSA (Putative mitochondrial saccharopine dehydrogenase-like oxidoreductase OS=Morus notabilis OX=981085 GN=L484_020963 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 12 PLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASSPAP 71
          P YD++ILGA+GFTGKYVVREALKFLN +PSSPLKSLALAGR+  KL +ALKW A   +P
Sbjct: 14 PRYDIVILGASGFTGKYVVREALKFLN-TPSSPLKSLALAGRNSTKLAEALKWAAHPNSP 73

Query: 72 PPIPLLISNIAE 84
          PPIP+L +  ++
Sbjct: 74 PPIPILTAETSD 84

BLAST of Bhi11G002441 vs. TrEMBL
Match: tr|M5X4V6|M5X4V6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G260300 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 11 TPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASSPA 70
          +P YDLIILGA+GFTGKYVV+EALKFLN +PSSPLKSLALAGR   KLT+ LKW A    
Sbjct: 10 SPPYDLIILGASGFTGKYVVKEALKFLN-TPSSPLKSLALAGRSPTKLTQTLKWAAHPNP 69

Query: 71 PPPIPLLISNIAEP 85
          PPPIP++ ++  +P
Sbjct: 70 PPPIPIINADTTDP 82

BLAST of Bhi11G002441 vs. NCBI nr
Match: XP_008443614.1 (PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 6.9e-29
Identity = 71/85 (83.53%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 1  MSGGPQQV-LSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLT 60
          MSGGPQQV LSTP YDLIILGATGFTGKY+VREALKFLNPS SSPLKSLALAGRDHAKLT
Sbjct: 1  MSGGPQQVLLSTPPYDLIILGATGFTGKYIVREALKFLNPSSSSPLKSLALAGRDHAKLT 60

Query: 61 KALKWTASSPAPPPIPLLISNIAEP 85
           ALKW A     PPIPLLIS+I +P
Sbjct: 61 NALKWAAHPLPSPPIPLLISDITKP 85

BLAST of Bhi11G002441 vs. NCBI nr
Match: XP_022969671.1 (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Cucurbita maxima])

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 9  LSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASS 68
          +  PLYD IILGA+GFTGKYVVREALKFLNPSPSSPLKS ALAGR+  KLT+ LKW A  
Sbjct: 1  MEAPLYDFIILGASGFTGKYVVREALKFLNPSPSSPLKSFALAGRNPTKLTETLKWAAHP 60

Query: 69 PAPPPIPLLISNIAEP 85
           +PPPIPLL ++I++P
Sbjct: 61 NSPPPIPLLTADISDP 76

BLAST of Bhi11G002441 vs. NCBI nr
Match: XP_023530251.1 (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 9  LSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTKALKWTASS 68
          +  PLYD IILGA+GFTGKYVVREALKFLNPSPSSPLKS ALAGR+  KLT+ LKW A  
Sbjct: 1  MEAPLYDFIILGASGFTGKYVVREALKFLNPSPSSPLKSFALAGRNPTKLTETLKWAAHP 60

Query: 69 PAPPPIPLLISNIAEP 85
           +PPPIPLL +++++P
Sbjct: 61 NSPPPIPLLTADVSDP 76

BLAST of Bhi11G002441 vs. NCBI nr
Match: XP_022144561.1 (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-22
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 1  MSGGPQQVLSTPLYDLIILGATGFTGKYVVREALKFLNPSPS-SPLKSLALAGRDHAKLT 60
          M+ G Q+   +P YDLIILGATGFTGKYVVREALKFLN S S SPLKS ALAGR+H+KLT
Sbjct: 1  MADGDQEFQFSPPYDLIILGATGFTGKYVVREALKFLNASHSPSPLKSFALAGRNHSKLT 60

Query: 61 KALKWTASSPAPPPIPLLISNIAEP 85
          + LKW A   +PPPIP+LI+++++P
Sbjct: 61 QTLKWAAHPHSPPPIPVLIADVSDP 85

BLAST of Bhi11G002441 vs. NCBI nr
Match: XP_022144422.1 (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 1  MSGGPQQVLSTPLYDLIILGATGFTGKYVVREALKFLNPSPSSPLKSLALAGRDHAKLTK 60
          M+GG  ++LS PLYDL ILGATGFTGKYV+REALKF+NPSPSSPLKSLALA RDH KLT+
Sbjct: 1  MAGGHHELLSGPLYDLTILGATGFTGKYVLREALKFVNPSPSSPLKSLALAARDHEKLTQ 60

Query: 61 ALKWTASSPAPPPIPLLISNIAEP 85
           LKW A         LL ++I  P
Sbjct: 61 TLKWAAHPXXXXXXXLLTADITAP 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q8LGI2|SCPDL_ARATH2.4e-1759.21Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
Match NameE-valueIdentityDescription
AT5G39410.11.3e-1859.21Saccharopine dehydrogenase [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B7Z4|A0A1S3B7Z4_CUCME4.5e-2983.53probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
tr|A0A0A0LF70|A0A0A0LF70_CUCSA5.0e-2070.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824740 PE=4 SV=1[more]
tr|A0A1S3B8K4|A0A1S3B8K4_CUCME1.5e-1973.97probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
tr|W9QQU6|W9QQU6_9ROSA3.6e-1868.06Putative mitochondrial saccharopine dehydrogenase-like oxidoreductase OS=Morus n... [more]
tr|M5X4V6|M5X4V6_PRUPE6.1e-1867.57Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G260300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008443614.16.9e-2983.53PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase... [more]
XP_022969671.12.1e-2272.37probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
XP_023530251.12.8e-2271.05probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
XP_022144561.14.8e-2267.06probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
XP_022144422.11.8e-2166.67probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009247 glycolipid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0030488 tRNA methylation
biological_process GO:0006333 chromatin assembly or disassembly
biological_process GO:0007623 circadian rhythm
cellular_component GO:0005773 vacuole
cellular_component GO:0016020 membrane
cellular_component GO:0044446 intracellular organelle part
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005811 lipid particle
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008173 RNA methyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M002441Bhi11M002441mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.720coord: 12..85
e-value: 4.8E-5
score: 25.8
NoneNo IPR availablePANTHERPTHR12286UNCHARACTERIZEDcoord: 14..84