Bhi11G002229 (gene) Wax gourd

Overview
NameBhi11G002229
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionDNA-directed RNA polymerase subunit
Locationchr11 : 72079755 .. 72080192 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATGCAAAGTAGGCTGTAGCCCATAAAAGGGTCAATGCCATTAGAGGTTGCAAGCCTGTGAGTGTAAGTAGTGGAACTGAAGGAATATCCTCACTTGAGGAAGAGACTACTGTTATCAATACACTGGAAGGAGATGCATTTGATGACACTGCAACCAAGTCCCGTATAGAAGATTCTGAGGAAGTTCCCCCGGAAATTTTCATGCAAAAGAATTTCTCCTCAGGACAGTTGATGCCATCTGAGGTACTGCCAGTTTATTTTGTGATTGCAGGTCAAGTTTTCCCTTTCCTTATCTTCATATCATTTTTTAATAATAGGTTAAAGATATCCTGAAGCGTTTGTGGAAAAATGAAGCTACTCTCTGTTCCTTTATTAGTGATATTCGTCAGCAGGGACATGGAAATAAGGCAGGCTATTCCATGTTTTTCTTAG

mRNA sequence

ATGGTGGATGCAAAGGTCAATGCCATTAGAGGTTGCAAGCCTGTGAGTGTAAGTAGTGGAACTGAAGGAATATCCTCACTTGAGGAAGAGACTACTGTTATCAATACACTGGAAGGAGATGCATTTGATGACACTGCAACCAAGTCCCGTATAGAAGATTCTGAGGAAGTTCCCCCGGAAATTTTCATGCAAAAGAATTTCTCCTCAGGACAGTTGATGCCATCTGAGGTACTGCCACTACTCTCTGTTCCTTTATTAGTGATATTCGTCAGCAGGGACATGGAAATAAGGCAGGCTATTCCATGTTTTTCTTAG

Coding sequence (CDS)

ATGGTGGATGCAAAGGTCAATGCCATTAGAGGTTGCAAGCCTGTGAGTGTAAGTAGTGGAACTGAAGGAATATCCTCACTTGAGGAAGAGACTACTGTTATCAATACACTGGAAGGAGATGCATTTGATGACACTGCAACCAAGTCCCGTATAGAAGATTCTGAGGAAGTTCCCCCGGAAATTTTCATGCAAAAGAATTTCTCCTCAGGACAGTTGATGCCATCTGAGGTACTGCCACTACTCTCTGTTCCTTTATTAGTGATATTCGTCAGCAGGGACATGGAAATAAGGCAGGCTATTCCATGTTTTTCTTAG

Protein sequence

MVDAKVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEIFMQKNFSSGQLMPSEVLPLLSVPLLVIFVSRDMEIRQAIPCFS
Homology
[Close]
BLAST of Bhi11G002229 vs. TrEMBL
Match: tr|A0A1S3B6U1|A0A1S3B6U1_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103486799 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.5e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEIFMQ 64
           + NAIR  KPVSVSSG EG+SSLEEETT              T++ +EDSE+V PEIFMQ
Sbjct: 220 RANAIRRSKPVSVSSGAEGVSSLEEETT--------------TEATVEDSEDVSPEIFMQ 279

Query: 65  KNFSSGQLMPSEVLPLL 82
           KNFSSG L+PSEV  +L
Sbjct: 280 KNFSSGHLLPSEVKDIL 282

[Close]
BLAST of Bhi11G002229 vs. TrEMBL
Match: tr|A0A0A0LF53|A0A0A0LF53_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 2   VDAKVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEI 61
           V  + NAIR  KPVSVSSG EG+SSLEEETT              T++ +ED E+V PE+
Sbjct: 217 VQKRANAIRRSKPVSVSSGAEGVSSLEEETT--------------TEATVEDFEDVSPEV 276

Query: 62  FMQKNFSSGQLMPSEVLPLL 82
           FMQKNFSSG L+PSEV  +L
Sbjct: 277 FMQKNFSSGHLLPSEVKDIL 282

[Close]
BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_022154235.1 (DNA-directed RNA polymerase I subunit 1 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKPVSV SG EGISSLEEE     TTVINT EGDAFDDTATK+  EDSEEVPP
Sbjct: 215 RANAIRGCKPVSVISGAEGISSLEEETTFSHTTVINTSEGDAFDDTATKAPTEDSEEVPP 274

Query: 65  EIFMQKNFSSGQLMPSEV 78
           E+FMQKNFSSG LMPSEV
Sbjct: 275 EVFMQKNFSSGHLMPSEV 292

[Close]
BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_022938891.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+G L+PSEV  +L
Sbjct: 275 EIFVPKNFSAGHLLPSEVKHIL 296

[Close]
BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_023538901.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+G L+PSEV  +L
Sbjct: 275 EIFVPKNFSAGHLLPSEVKHIL 296

[Close]
BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_022971295.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima])

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+  L+PSEV  +L
Sbjct: 275 EIFVPKNFSTVHLLPSEVKHIL 296

[Close]
BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_008443105.2 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEIFMQ 64
           + NAIR  KPVSVSSG EG+SSLEEETT              T++ +EDSE+V PEIFMQ
Sbjct: 220 RANAIRRSKPVSVSSGAEGVSSLEEETT--------------TEATVEDSEDVSPEIFMQ 279

Query: 65  KNFSSGQLMPSEVLPLL 82
           KNFSSG L+PSEV  +L
Sbjct: 280 KNFSSGHLLPSEVKDIL 282

The following BLAST results are available for this feature:
BLAST of Bhi11G002229 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi11G002229 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi11G002229 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B6U1|A0A1S3B6U1_CUCME8.5e-1359.74DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103486799 PE=3... [more]
tr|A0A0A0LF53|A0A0A0LF53_CUCSA3.2e-1256.25DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 P... [more]
BLAST of Bhi11G002229 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154235.11.2e-2380.77DNA-directed RNA polymerase I subunit 1 [Momordica charantia][more]
XP_022938891.12.4e-1968.29DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata][more]
XP_023538901.12.4e-1968.29DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo][more]
XP_022971295.12.7e-1867.07DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima][more]
XP_008443105.21.3e-1259.74PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1 [Cucumis... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033036 macromolecule localization
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0071702 organic substance transport
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:1902582 single-organism intracellular transport
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M002229Bhi11M002229mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi11G002229ClCG10G017230Watermelon (Charleston Gray)wcgwgoB097
Bhi11G002229Cla017509Watermelon (97103) v1wgowmB024
Bhi11G002229Cla97C10G200060Watermelon (97103) v2wgowmbB018
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi11G002229Cucumber (Gy14) v2cgybwgoB214
Bhi11G002229Cucurbita maxima (Rimu)cmawgoB0293
Bhi11G002229Cucurbita maxima (Rimu)cmawgoB0987
Bhi11G002229Cucurbita moschata (Rifu)cmowgoB0282
Bhi11G002229Cucurbita moschata (Rifu)cmowgoB0984
Bhi11G002229Cucurbita pepo (Zucchini)cpewgoB0746
Bhi11G002229Cucurbita pepo (Zucchini)cpewgoB1087
Bhi11G002229Wild cucumber (PI 183967)cpiwgoB223
Bhi11G002229Cucumber (Chinese Long) v3cucwgoB227
Bhi11G002229Cucumber (Chinese Long) v2cuwgoB223
Bhi11G002229Bottle gourd (USVL1VR-Ls)lsiwgoB302
Bhi11G002229Melon (DHL92) v3.6.1medwgoB384
Bhi11G002229Melon (DHL92) v3.5.1mewgoB382
Bhi11G002229Silver-seed gourdcarwgoB0197
Bhi11G002229Silver-seed gourdcarwgoB0320