Bhi11G002201 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G002201
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	SQUAMOSA promoter binding protein-like protein
Location	chr11 : 71103075 .. 71103429 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCACATCCTTGGCAAAGCAACTCTCAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTGCAAGTGGAACCAGTTTTTCTTGTCCTGGGAATCCTTCTGGAGAATGCATCAATGGAGTTACTGACTCATCCTGTGCTCTCTCTCTTCTGTCTAATCAAACATGGGGCTCCAGAAACCAAACAACGGCGTCGAGGTGAATGCCTTGTTAAATGCTGAAGGTGCACTTGTGGCTCAAACAACAGCTCATGCTACTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAGCTCCTGCTAGCAGCTCTCTGGACTTGACATCTGATCTGGGTCTCAATCAA

mRNA sequence

ATGTCCCACATCCTTGGCAAAGCAACTCTCAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTGCAAGTGGAACCAGTTTTTCTTGTCCTGGGAATCCTTCTGGAGAATGCATCAATGGAGTTACTGACTCATCCTAAACCAAACAACGGCGTCGAGGTGAATGCCTTGTTAAATGCTGAAGGTGCACTTGTGGCTCAAACAACAGCTCATGCTACTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAGCTCCTGCTAGCAGCTCTCTGGACTTGACATCTGATCTGGGTCTCAATCAA

Coding sequence (CDS)

ATGTCCCACATCCTTGGCAAAGCAACTCTCAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTGCAAGTGGAACCAGTTTTTCTTGTCCTGGGAATCCTTCTGGAGAATGCATCAATGGAGTTACTGACTCATCCTAAACCAAACAACGGCGTCGAGGTGAATGCCTTGTTAAATGCTGAAGGTGCACTTGTGGCTCAAACAACAGCTCATGCTACTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAGCTCCTGCTAGCAGCTCTCTGGACTTGACATCTGATCTGGGTCTCAATCAA

Protein sequence

MSHILGKATLRTIHLNFSCQFLQVEPVFLVLGILLENASMELLTHPKPNNGVEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLNQ

Homology

[Close]

BLAST of Bhi11G002201 vs. TrEMBL
Match: tr|A0A1S3B7Z5|A0A1S3B7Z5_CUCME (squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486778 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 286 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. TrEMBL
Match: tr|A0A1S4DUW0|A0A1S4DUW0_CUCME (squamosa promoter-binding-like protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486778 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 253 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 305

[Close]

BLAST of Bhi11G002201 vs. TrEMBL
Match: tr|A0A0A0LBC1|A0A0A0LBC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809420 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           +EVNALLNAEG LVAQTTA A TNHFPTMSWGFKGNEAP SS  DLTSDLGLN
Sbjct: 286 IEVNALLNAEGTLVAQTTADAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. TrEMBL
Match: tr|M5WSV6|M5WSV6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb019646mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.2e-07
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 50  NGVEVNALLNAEGALVAQTTAHA-TTNHFPTMSWGFKGNEAPASSSLDLTSDLGLNQ 106
           +GV +N L+N +G  V Q   HA T+NHFPT SWGFKGNEA  SSS ++  DLGL Q
Sbjct: 57  SGVGMNTLINTQGPPVGQPITHAGTSNHFPTTSWGFKGNEA-GSSSHEMLPDLGLGQ 112

[Close]

BLAST of Bhi11G002201 vs. TrEMBL
Match: tr|A0A2P6RDM1|A0A2P6RDM1_ROSCH (Putative transcription factor SBP family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0480201 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 24  VEPVFLVLGILLENASMELLTH---PKPNNGVEVNALLNAEGALVAQTTAH-ATTNHFPT 83
           + P   V G+   + ++ LL++      N GV  NA +N +GA VAQ+ A+  T N FPT
Sbjct: 255 IPPGECVSGVTDSSCALSLLSNQPWDSRNRGVGTNAFINTQGAPVAQSIANVGTINPFPT 314

Query: 84  MSWGFKGNEAPASSSLDLTSDLGLNQ 106
            SWGFKGNEA  SSS  +  DLGL Q
Sbjct: 315 TSWGFKGNEA-GSSSHQMLPDLGLGQ 339

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_008443072.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 286 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_016899769.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 253 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 305

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_004136576.1 (PREDICTED: squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypothetical protein Csa_3G809420 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           +EVNALLNAEG LVAQTTA A TNHFPTMSWGFKGNEAP SS  DLTSDLGLN
Sbjct: 286 IEVNALLNAEGTLVAQTTADAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_022159422.1 (squamosa promoter-binding-like protein 17, partial [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 7.6e-13
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 47  KPNNGVEVNALLNAEGALVAQTTA-HATTNHFPTMSWGFKGNEAPASSSLD--LTSDLGL 106
           + ++ +EVNALLN EGALVAQTTA HA  NHFPT  WGFKGNEA ASSS    LTSDLGL
Sbjct: 147 RTSSALEVNALLNVEGALVAQTTATHAAANHFPTAPWGFKGNEAAASSSSQDHLTSDLGL 206

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_022982985.1 (squamosa promoter-binding-like protein 17 isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 46/59 (77.97%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 52  VEVN-ALLNAEGALVAQTT-AHATTNHFP----TMSWGFKGNEAPASSSLDLTSDLGLN 105
           +EVN ALLNAEGALVAQTT AHA TNHFP      SW FKGNEAPAS SLDL SDLGLN
Sbjct: 277 LEVNAALLNAEGALVAQTTSAHAATNHFPMSMSMSSWSFKGNEAPASISLDLASDLGLN 335

The following BLAST results are available for this feature:

BLAST of Bhi11G002201 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G002201 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G002201 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7Z5\|A0A1S3B7Z5_CUCME	1.2e-17	90.57	squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DUW0\|A0A1S4DUW0_CUCME	1.2e-17	90.57	squamosa promoter-binding-like protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0LBC1\|A0A0A0LBC1_CUCSA	2.2e-16	86.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809420 PE=4 SV=1	[more]
tr\|M5WSV6\|M5WSV6_PRUPE	9.2e-07	57.89	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb019646mg PE=4 SV=1	[more]
tr\|A0A2P6RDM1\|A0A2P6RDM1_ROSCH	1.2e-06	45.35	Putative transcription factor SBP family OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

BLAST of Bhi11G002201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443072.1	1.8e-17	90.57	PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo]	[more]
XP_016899769.1	1.8e-17	90.57	PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo]	[more]
XP_004136576.1	3.3e-16	86.79	PREDICTED: squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315....	[more]
XP_022159422.1	7.6e-13	72.58	squamosa promoter-binding-like protein 17, partial [Momordica charantia]	[more]
XP_022982985.1	1.9e-11	77.97	squamosa promoter-binding-like protein 17 isoform X2 [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002201	Bhi11M002201	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G002201	Cla017529	Watermelon (97103) v1	wgowmB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G002201	Cucumber (Gy14) v1	cgywgoB482
Bhi11G002201	Cucumber (Gy14) v2	cgybwgoB214
Bhi11G002201	Cucurbita maxima (Rimu)	cmawgoB0293
Bhi11G002201	Cucurbita maxima (Rimu)	cmawgoB0987
Bhi11G002201	Cucurbita moschata (Rifu)	cmowgoB0282
Bhi11G002201	Cucurbita moschata (Rifu)	cmowgoB0984
Bhi11G002201	Cucurbita pepo (Zucchini)	cpewgoB0746
Bhi11G002201	Cucurbita pepo (Zucchini)	cpewgoB1087
Bhi11G002201	Wild cucumber (PI 183967)	cpiwgoB223
Bhi11G002201	Cucumber (Chinese Long) v3	cucwgoB227
Bhi11G002201	Cucumber (Chinese Long) v2	cuwgoB223
Bhi11G002201	Bottle gourd (USVL1VR-Ls)	lsiwgoB302
Bhi11G002201	Melon (DHL92) v3.6.1	medwgoB384
Bhi11G002201	Melon (DHL92) v3.5.1	mewgoB382
Bhi11G002201	Watermelon (Charleston Gray)	wcgwgoB097
Bhi11G002201	Watermelon (97103) v2	wgowmbB018
Bhi11G002201	Silver-seed gourd	carwgoB0197
Bhi11G002201	Silver-seed gourd	carwgoB0320