Bhi11G002200 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G002200
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Regulator of rDNA transcription protein 15
Location	chr11 : 71095750 .. 71096175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGCTTGCATGCCGACCCATCCACTCACCAACACTTAGTCTTATGTTTGCATACTTCTACTCAACATATAACCTCCATGGCACTTGGAAGAAATAAATGGGTGTGTGTAGGGAAGGATGAATCAGAGCAACAAAGGGTGAATCTTAATGGATCGTGGCAACAAGGCCACTCTGCCACTTACAATACCTTTGTAAGTCGTCTGCAAAGGATTCTACCCATCGTTCAATGGGAATTACGTTACAAGGTGGCCCCCACAATTCATCCATCACGAAGGCTTAGCCGCCAACACATGTGTTTGGGGGCCGGAAGGTTCCTACTACCGGTCGACAATCAAGCGATGAGTGCATGCGTCGCTTCTCGTCCAAATTCTGACTTAGAGGCATTCAGTTATAATCCCACGTACGGTAGCTTTGGCCACTAG

mRNA sequence

ATGATGGGCTTGCATGCCGACCCATCCACTCACCAACACTTAGTCTTATGTTTGCATACTTCTACTCAACATATAACCTCCATGGCACTTGGAAGAAATAAATGGGTGTGTGTAGGGAAGGATGAATCAGAGCAACAAAGGGTGAATCTTAATGGATCGTGGCAACAAGGCCACTCTGCCACTTACAATACCTTTGTAAGTCGTCTGCAAAGGATTCTACCCATCGTTCAATGGGAATTACGTTACAAGGTGGCCCCCACAATTCATCCATCACGAAGGCTTAGCCGCCAACACATGTGTTTGGGGGCCGGAAGGTTCCTACTACCGGTCGACAATCAAGCGATGAGTGCATGCGTCGCTTCTCGTCCAAATTCTGACTTAGAGGCATTCAGTTATAATCCCACGTACGGTAGCTTTGGCCACTAG

Coding sequence (CDS)

ATGATGGGCTTGCATGCCGACCCATCCACTCACCAACACTTAGTCTTATGTTTGCATACTTCTACTCAACATATAACCTCCATGGCACTTGGAAGAAATAAATGGGTGTGTGTAGGGAAGGATGAATCAGAGCAACAAAGGGTGAATCTTAATGGATCGTGGCAACAAGGCCACTCTGCCACTTACAATACCTTTGTAAGTCGTCTGCAAAGGATTCTACCCATCGTTCAATGGGAATTACGTTACAAGGTGGCCCCCACAATTCATCCATCACGAAGGCTTAGCCGCCAACACATGTGTTTGGGGGCCGGAAGGTTCCTACTACCGGTCGACAATCAAGCGATGAGTGCATGCGTCGCTTCTCGTCCAAATTCTGACTTAGAGGCATTCAGTTATAATCCCACGTACGGTAGCTTTGGCCACTAG

Protein sequence

MMGLHADPSTHQHLVLCLHTSTQHITSMALGRNKWVCVGKDESEQQRVNLNGSWQQGHSATYNTFVSRLQRILPIVQWELRYKVAPTIHPSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGSFGH

Homology

[Close]

BLAST of Bhi11G002200 vs. TrEMBL
Match: tr|A0A2N9HGK0|A0A2N9HGK0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38745 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.3e-18
Identity = 53/110 (48.18%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 33   NKWVCVGKDESEQQRVNLNGSWQQG---HSATYNTFVSRLQRILPIVQWELRYKVAPTIH 92
            N+W   G        +NL+GSWQQG   H      ++SRLQRILP+ +WEL +K A T  
Sbjct: 1490 NRWWRRGGTNRSDIGLNLSGSWQQGPLCHLQYPVAYLSRLQRILPVTRWELYFKAAHTAR 1549

Query: 93   PSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGSF 140
            P R L ++H+  GA R LL V N+A    +AS P+SDLEAFS+NP +GSF
Sbjct: 1550 PPRGLHQRHVPSGARRPLLRVGNRATGTRIASSPDSDLEAFSHNPAHGSF 1599

[Close]

BLAST of Bhi11G002200 vs. TrEMBL
Match: tr|A0A2N9HJ41|A0A2N9HJ41_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39602 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 22   TQHITSMALGRNKWVCVGKDESEQQRVN---LNGSWQQGHSATYNTFVSRLQRILPIVQW 81
            T+H T+    R + V  G DES++ R     +  +    H      ++SRLQRILP+ +W
Sbjct: 2110 TKHATTGIQNRLRMVEEGGDESKRHRAESQWIVAARPLCHLQYPVAYLSRLQRILPVTRW 2169

Query: 82   ELRYKVAPTIHPSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGS 140
            EL +K A T  P R L ++H+  GA R LL V N+A    +AS P+SDLEAFS+NP +GS
Sbjct: 2170 ELYFKAAHTARPPRGLHQRHVPSGARRPLLRVGNRATGTRIASSPDSDLEAFSHNPAHGS 2229

[Close]

BLAST of Bhi11G002200 vs. TrEMBL
Match: tr|A0A2N9I9W5|A0A2N9I9W5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50608 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 33  NKWVCVGKDESEQQRVN---LNGSWQQGHSATYNTFVSRLQRILPIVQWELRYKVAPTIH 92
           N+W+  G DES++ R     +  +    H      ++SRLQRILP+ +WEL +K A T  
Sbjct: 885 NRWMEEGGDESKRHRAESQWIVAARPLCHLQYPVAYLSRLQRILPVTRWELYFKAAHTAR 944

Query: 93  PSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGSF 140
           P R L ++H+  GA R LL V N+A    +AS P+SDLEAFS+NP +GSF
Sbjct: 945 PPRGLHQRHVPSGARRPLLRVGNRATGTRIASSPDSDLEAFSHNPAHGSF 994

[Close]

BLAST of Bhi11G002200 vs. TrEMBL
Match: tr|A0A2N9I6G3|A0A2N9I6G3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47586 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 22  TQHITSMALGRNKWVCVGKDESEQQRVN---LNGSWQQGHSATYNTFVSRLQRILPIVQW 81
           T+H T+    R + V  G DES++ R     +  +    H      ++SRLQRILP+ +W
Sbjct: 287 TKHATTGIQNRLRMVEEGGDESKRHRAESQWIVAARPLCHLQYPVAYLSRLQRILPVTRW 346

Query: 82  ELRYKVAPTIHPSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGS 140
           EL +K A T  P R L ++H+  GA R LL V N+A    +AS P+SDLEAFS+NP +GS
Sbjct: 347 ELYFKAAHTARPPRGLHQRHVPSGARRPLLRVGNRATGTRIASSPDSDLEAFSHNPAHGS 406

[Close]

BLAST of Bhi11G002200 vs. TrEMBL
Match: tr|A0A2N9F7T4|A0A2N9F7T4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11094 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 33  NKWVCVGKDESEQQRVN---LNGSWQQGHSATYNTFVSRLQRILPIVQWELRYKVAPTIH 92
           N+W+  G DES++ R     +  +    H      ++SRLQRILP+ +WEL +K A T  
Sbjct: 745 NRWMEEGGDESKRHRAESQWIVAARPLCHLQYPVAYLSRLQRILPVTRWELYFKAAHTAR 804

Query: 93  PSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGSF 140
           P R L ++H+  GA R LL V N+A    +AS P+SDLEAFS+NP +GSF
Sbjct: 805 PPRGLHQRHVPSGARRPLLRVGNRATGTRIASSPDSDLEAFSHNPAHGSF 854

[Close]

BLAST of Bhi11G002200 vs. NCBI nr
Match: POE44841.1 (putative uncharacterized protein art2 [Quercus suber])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 65  FVSRLQRILPIVQWELRYKVAPTIHPSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPN 124
           ++SRLQRILP  +WEL +K A    P R L ++H+ LGA   LL V N+A  A VAS P+
Sbjct: 388 YLSRLQRILPAARWELYFKAAHAARPPRGLGQRHVPLGARGPLLQVGNRAAGARVASSPD 447

Query: 125 SDLEAFSYNPTYGSF 140
           SDLEAFS+NP +GSF
Sbjct: 448 SDLEAFSHNPAHGSF 462

[Close]

BLAST of Bhi11G002200 vs. NCBI nr
Match: POE44842.1 (putative uncharacterized protein art2 [Quercus suber])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 65  FVSRLQRILPIVQWELRYKVAPTIHPSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPN 124
           ++SRLQRILP  +WEL +K A    P R L ++H+ LGA   LL V N+A  A VAS P+
Sbjct: 79  YLSRLQRILPAARWELYFKAAHAARPPRGLGQRHVPLGARGPLLQVGNRAAGARVASSPD 138

Query: 125 SDLEAFSYNPTYGSF 140
           SDLEAFS+NP +GSF
Sbjct: 139 SDLEAFSHNPAHGSF 153

[Close]

BLAST of Bhi11G002200 vs. NCBI nr
Match: OPH47798.1 (hypothetical protein B4U81_25600, partial [Vibrio campbellii])

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 65  FVSRLQRILPIVQWELRYKVAPTIHPSRRLSRQHMCLGAGRFLLPVDNQAMSACVASRPN 124
           ++SRLQRILP  +WEL +       P   L ++H+ LGA R LL V  +A  ACVAS P+
Sbjct: 43  YLSRLQRILPAARWELYFMATRAARPPHGLGQRHVPLGAVRPLLLVGKRAAGACVASSPD 102

Query: 125 SDLEAFSYNPTYGSF 140
           SDLEAFS+NP +GSF
Sbjct: 103 SDLEAFSHNPAHGSF 117

[Close]

BLAST of Bhi11G002200 vs. NCBI nr
Match: KEH16988.1 (senescence-associated protein, putative [Medicago truncatula])

HSP 1 Score: 80.1 bits (196), Expect = 6.6e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 38  VGKDESEQQRVNLNGSWQQGHSATYNTFVSRLQRILPIVQWELRYKVAPTIHPSRRLSRQ 97
           VG+DES++Q +NL+GSWQQGHS                   +LR+KV+   HP   + ++
Sbjct: 3   VGRDESKRQGLNLSGSWQQGHS-------------------KLRFKVSRKAHPPYGVHQR 62

Query: 98  HMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGSF 140
           H+ LG    LL V  +     +AS P+SDLEAFS+NPT+GSF
Sbjct: 63  HVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGSF 85

[Close]

BLAST of Bhi11G002200 vs. NCBI nr
Match: GAV91288.1 (hypothetical protein CFOL_v3_34685, partial [Cephalotus follicularis])

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-12
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 40  KDESEQQRVN---LNGSWQQGHSATYNTFVSRLQRILPIVQWELRYKVAPTIHPSRRLSR 99
           +DESE+QR     +  + Q  H      ++SRL+RILP      R+K A T  PSR L +
Sbjct: 1   RDESERQRAESQLIVAARQLCHLQYPVAYLSRLKRILPTA----RFKAARTACPSRGLRQ 60

Query: 100 QHMCLGAGRFLLPVDNQAMSACVASRPNSDLEAFSYNPTYGSF 140
           +H+ LG  R LL V  +A  ACVAS P+SDLEAFS+NP +GSF
Sbjct: 61  RHVPLGTLRPLLLVGKRAAGACVASSPDSDLEAFSHNPAHGSF 99

The following BLAST results are available for this feature:

BLAST of Bhi11G002200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G002200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G002200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9HGK0\|A0A2N9HGK0_FAGSY	5.3e-18	48.18	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38745 PE=4 SV=1	[more]
tr\|A0A2N9HJ41\|A0A2N9HJ41_FAGSY	4.2e-15	42.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39602 PE=4 SV=1	[more]
tr\|A0A2N9I9W5\|A0A2N9I9W5_FAGSY	4.2e-15	44.55	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50608 PE=4 SV=1	[more]
tr\|A0A2N9I6G3\|A0A2N9I6G3_FAGSY	4.2e-15	42.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47586 PE=4 SV=1	[more]
tr\|A0A2N9F7T4\|A0A2N9F7T4_FAGSY	4.2e-15	44.55	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11094 PE=4 SV=1	[more]

BLAST of Bhi11G002200 vs. NCBI nr


Match Name	E-value	Identity	Description
POE44841.1	6.0e-13	56.00	putative uncharacterized protein art2 [Quercus suber]	[more]
POE44842.1	6.0e-13	56.00	putative uncharacterized protein art2 [Quercus suber]	[more]
OPH47798.1	2.3e-12	53.33	hypothetical protein B4U81_25600, partial [Vibrio campbellii]	[more]
KEH16988.1	6.6e-12	43.14	senescence-associated protein, putative [Medicago truncatula]	[more]
GAV91288.1	8.7e-12	47.57	hypothetical protein CFOL_v3_34685, partial [Cephalotus follicularis]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002200	Bhi11M002200	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047	FAMILY NOT NAMED	coord: 65..139

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G002200	Cucurbita maxima (Rimu)	cmawgoB0293
Bhi11G002200	Cucurbita maxima (Rimu)	cmawgoB0987
Bhi11G002200	Cucurbita moschata (Rifu)	cmowgoB0282
Bhi11G002200	Cucurbita moschata (Rifu)	cmowgoB0984
Bhi11G002200	Cucurbita pepo (Zucchini)	cpewgoB0746
Bhi11G002200	Cucurbita pepo (Zucchini)	cpewgoB1087
Bhi11G002200	Wild cucumber (PI 183967)	cpiwgoB223
Bhi11G002200	Cucumber (Chinese Long) v3	cucwgoB227
Bhi11G002200	Cucumber (Chinese Long) v2	cuwgoB223
Bhi11G002200	Bottle gourd (USVL1VR-Ls)	lsiwgoB302
Bhi11G002200	Melon (DHL92) v3.6.1	medwgoB384
Bhi11G002200	Melon (DHL92) v3.5.1	mewgoB382
Bhi11G002200	Watermelon (Charleston Gray)	wcgwgoB097
Bhi11G002200	Watermelon (97103) v2	wgowmbB018
Bhi11G002200	Watermelon (97103) v1	wgowmB024
Bhi11G002200	Silver-seed gourd	carwgoB0197
Bhi11G002200	Silver-seed gourd	carwgoB0320
Bhi11G002200	Cucumber (Gy14) v1	cgywgoB482
Bhi11G002200	Cucumber (Gy14) v2	cgybwgoB214