Bhi11G002136 (gene) Wax gourd

NameBhi11G002136
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionMADS box protein
Locationchr11 : 69304447 .. 69304628 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAATGCCACCGCGAGGCAAATCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCTAAAGAGCTTTCCATTTTATGCGATGCCAATGTTGCCCTTATTATCTTCTCCGCCACTAGAAATTTGTTTGAGTATTGCAGCTCAAG

mRNA sequence

ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAATGCCACCGCGAGGCAAATCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCTAAAGAGCTTTCCATTTTATGCGATGCCAATGTTGCCCTTATTATCTTCTCCGCCACTAGAAATTTGTTTGAGTATTGCAGCTCAAG

Coding sequence (CDS)

ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAATGCCACCGCGAGGCAAATCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCTAAAGAGCTTTCCATTTTATGCGATGCCAATGTTGCCCTTATTATCTTCTCCGCCACTAGAAATTTGTTTGAGTATTGCAGCTCAAG

Protein sequence

MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS
BLAST of Bhi11G002136 vs. Swiss-Prot
Match: sp|Q9FVC1|SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-21
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQIRKIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFE+CSS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

BLAST of Bhi11G002136 vs. Swiss-Prot
Match: sp|Q9FUY6|JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.3e-20
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQI+KIDN+TARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LF+Y SS
Sbjct: 1  MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

BLAST of Bhi11G002136 vs. Swiss-Prot
Match: sp|O82794|AGL24_ARATH (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.2e-19
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKI+I+KIDN TARQ+TFSKRRRG+FKKA ELS+LCDA+VALIIFSAT  LFE+ SS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

BLAST of Bhi11G002136 vs. Swiss-Prot
Match: sp|Q6VAM4|MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS23 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-16
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          M + KI+I++IDNAT+RQ+TFSKRR GLFKKA+ELSILCDA V L++FS+T  L+++ SS
Sbjct: 1  MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

BLAST of Bhi11G002136 vs. Swiss-Prot
Match: sp|Q5K4R0|MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-16
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 3  KEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 61
          +E+I IR+IDN  ARQ+TFSKRRRGLFKKA+ELSILCDA V L++FSAT  LF++ S+
Sbjct: 22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAST 79

BLAST of Bhi11G002136 vs. TAIR10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 102.8 bits (255), Expect = 7.4e-23
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQIRKIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFE+CSS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

BLAST of Bhi11G002136 vs. TAIR10
Match: AT4G24540.1 (AGAMOUS-like 24)

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-20
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKI+I+KIDN TARQ+TFSKRRRG+FKKA ELS+LCDA+VALIIFSAT  LFE+ SS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

BLAST of Bhi11G002136 vs. TAIR10
Match: AT5G23260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCS 60
          M + KI+I+KI+N TARQ+TFSKRR GL KK +ELSILCDA++ LI+FSAT  L E+CS
Sbjct: 1  MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCS 59

BLAST of Bhi11G002136 vs. TAIR10
Match: AT2G14210.1 (AGAMOUS-like 44)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-16
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          M + KI IR+IDN+T+RQ+TFSKRR GL KKAKELSILCDA V +IIFS+T  L++Y S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

BLAST of Bhi11G002136 vs. TAIR10
Match: AT5G51870.3 (AGAMOUS-like 71)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-15
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          M + KI+I+KI+N T+RQ+TFSKRR GLFKKA ELS+LCDA VA I+FS +  L EY SS
Sbjct: 1  MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSSS 60

BLAST of Bhi11G002136 vs. TrEMBL
Match: tr|A0A1S3B1C2|A0A1S3B1C2_CUCME (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.2e-20
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MAKEKIQIRKIDNATARQ+TFSKRRRGLFKKAKELS+LCDA+VALIIFSAT  LFEY SS
Sbjct: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

BLAST of Bhi11G002136 vs. TrEMBL
Match: tr|A0A2C9UY03|A0A2C9UY03_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G126800 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQI+KIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFEYCSS
Sbjct: 1  MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYCSS 60

BLAST of Bhi11G002136 vs. TrEMBL
Match: tr|Q06AL8|Q06AL8_BRARO (Short vegetative phase protein OS=Brassica rapa subsp. oleifera OX=145471 GN=SVP PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQIRKIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFE+CSS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

BLAST of Bhi11G002136 vs. TrEMBL
Match: tr|A7XFU1|A7XFU1_ARATH (At2g22540 OS=Arabidopsis thaliana OX=3702 GN=SVP PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQIRKIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFE+CSS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

BLAST of Bhi11G002136 vs. TrEMBL
Match: tr|Q6V0J8|Q6V0J8_BRACM (Short vegetative phase protein OS=Brassica campestris OX=3711 GN=SVP PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQIRKIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFE+CSS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

BLAST of Bhi11G002136 vs. NCBI nr
Match: XP_004143442.1 (PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus] >XP_011657947.1 PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MAKEKIQIRKIDNATARQ+TFSKRRRGLFKKAKELS+LCDA+VALIIFSAT  LFEY SS
Sbjct: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

BLAST of Bhi11G002136 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MAKEKIQIRKIDNATARQ+TFSKRRRGLFKKAKELS+LCDA+VALIIFSAT  LFEY SS
Sbjct: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

BLAST of Bhi11G002136 vs. NCBI nr
Match: XP_011657948.1 (PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MAKEKIQIRKIDNATARQ+TFSKRRRGLFKKAKELS+LCDA+VALIIFSAT  LFEY SS
Sbjct: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

BLAST of Bhi11G002136 vs. NCBI nr
Match: XP_022133337.1 (MADS-box protein JOINTLESS-like [Momordica charantia] >XP_022133338.1 MADS-box protein JOINTLESS-like [Momordica charantia] >XP_022133339.1 MADS-box protein JOINTLESS-like [Momordica charantia] >XP_022133340.1 MADS-box protein JOINTLESS-like [Momordica charantia] >XP_022133342.1 MADS-box protein JOINTLESS-like [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MAKEKIQIRKIDNATARQ+TFSKRRRGLFKKAKELS+LCDA+VALIIFSAT  LFEY SS
Sbjct: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

BLAST of Bhi11G002136 vs. NCBI nr
Match: XP_010526675.1 (PREDICTED: MADS-box protein SVP-like [Tarenaya hassleriana])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MAKEKIQIRKIDNATARQITFSKRRRGLFKKAKELSILCDANVALIIFSATRNLFEYCSS 60
          MA+EKIQI+KIDNATARQ+TFSKRRRGLFKKA+ELS+LCDA+VALIIFS+T  LFEYCSS
Sbjct: 1  MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYCSS 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q9FVC1|SVP_ARATH1.3e-2185.00MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1[more]
sp|Q9FUY6|JOIN_SOLLC7.3e-2080.00MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1[more]
sp|O82794|AGL24_ARATH6.2e-1978.33MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1[more]
sp|Q6VAM4|MAD23_ORYSJ6.4e-1665.00MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
sp|Q5K4R0|MAD47_ORYSJ6.4e-1668.97MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Match NameE-valueIdentityDescription
AT2G22540.17.4e-2385.00K-box region and MADS-box transcription factor family protein [more]
AT4G24540.13.4e-2078.33AGAMOUS-like 24[more]
AT5G23260.21.8e-1666.10K-box region and MADS-box transcription factor family protein [more]
AT2G14210.12.3e-1666.67AGAMOUS-like 44[more]
AT5G51870.31.1e-1565.00AGAMOUS-like 71[more]
Match NameE-valueIdentityDescription
tr|A0A1S3B1C2|A0A1S3B1C2_CUCME9.2e-2090.00MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1[more]
tr|A0A2C9UY03|A0A2C9UY03_MANES2.1e-1985.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G126800 PE=4 SV=... [more]
tr|Q06AL8|Q06AL8_BRARO2.7e-1985.00Short vegetative phase protein OS=Brassica rapa subsp. oleifera OX=145471 GN=SVP... [more]
tr|A7XFU1|A7XFU1_ARATH2.7e-1985.00At2g22540 OS=Arabidopsis thaliana OX=3702 GN=SVP PE=2 SV=1[more]
tr|Q6V0J8|Q6V0J8_BRACM2.7e-1985.00Short vegetative phase protein OS=Brassica campestris OX=3711 GN=SVP PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_004143442.11.4e-1990.00PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus] >XP_011657947.... [more]
XP_008440538.11.4e-1990.00PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: M... [more]
XP_011657948.11.4e-1990.00PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis sativus][more]
XP_022133337.11.4e-1990.00MADS-box protein JOINTLESS-like [Momordica charantia] >XP_022133338.1 MADS-box p... [more]
XP_010526675.13.1e-1985.00PREDICTED: MADS-box protein SVP-like [Tarenaya hassleriana][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M002136Bhi11M002136mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 55.39
coord: 3..23
score: 48.05
coord: 23..38
score: 72.06
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.0E-33
score: 128.0
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 2.7E-24
score: 84.3
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..60
score: 27.628
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 13..60
e-value: 4.7E-24
score: 85.6
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 1..60
NoneNo IPR availablePANTHERPTHR11945:SF172AGAMOUS-LIKE MADS-BOX PROTEIN AGL15-RELATEDcoord: 1..59
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..59

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None