Bhi11G002011 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G002011
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA polymerase
Location	chr11 : 65308294 .. 65308533 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGATTGATATTAGTCTAGATACAGCAAAGGTTACATCAAACTTCAAGGTTGATTGGCACACTCTTGACATCAGAAAGAAAGACACATTAGTTAAGATAGGGATTAAGCTGGAGACCAAAAGGATTCCTGTATATCAGGATTTCGGTGCGGGCTGCGAGAGTGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAACAGGGGTCAAGGTTGGCCAGTGA

mRNA sequence

ATGGGTTGGATTGATATTAGTCTAGATACAGCAAAGGTTACATCAAACTTCAAGGTTGATTGGCACACTCTTGACATCAGAAAGAAAGACACATTAGTTAAGATAGGGATTAAGCTGGAGACCAAAAGGATTCCTGTATATCAGGATTTCGGTGCGGGCTGCGAGAGTGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAACAGGGGTCAAGGTTGGCCAGTGA

Coding sequence (CDS)

ATGGGTTGGATTGATATTAGTCTAGATACAGCAAAGGTTACATCAAACTTCAAGGTTGATTGGCACACTCTTGACATCAGAAAGAAAGACACATTAGTTAAGATAGGGATTAAGCTGGAGACCAAAAGGATTCCTGTATATCAGGATTTCGGTGCGGGCTGCGAGAGTGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAACAGGGGTCAAGGTTGGCCAGTGA

Protein sequence

MGWIDISLDTAKVTSNFKVDWHTLDIRKKDTLVKIGIKLETKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ

Homology

[Close]

BLAST of Bhi11G002011 vs. TrEMBL
Match: tr|A0A0D2S187|A0A0D2S187_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_006G234500 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T+ + V   FG GCESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 18 TRHLGVKHCFGVGCESGTKSRQTLNTRYDLKITGVKVGQ 56

[Close]

BLAST of Bhi11G002011 vs. TrEMBL
Match: tr|A0A2I0VCD2|A0A2I0VCD2_9ASPA (DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028098 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 9   DTAKVTSNFKVDWHTLDIRKKDTLVKIGIKLETKRIPVY 48
           +  +V+SNFKVDWH+L+IRKKDTLVK+GIKL +KR+PVY
Sbjct: 692 EKVQVSSNFKVDWHSLNIRKKDTLVKLGIKLRSKRMPVY 730

[Close]

BLAST of Bhi11G002011 vs. TrEMBL
Match: tr|W9RXL8|W9RXL8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018824 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-07
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T  + V   FGAG ESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 21 TGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVKVGQ 59

[Close]

BLAST of Bhi11G002011 vs. TrEMBL
Match: tr|A9PE47|A9PE47_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-07
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T  + V   FGAG ESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 21 TGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVKVGQ 59

[Close]

BLAST of Bhi11G002011 vs. TrEMBL
Match: tr|A0A2K1YGV6|A0A2K1YGV6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G074100v3 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T  + V   FG+G ESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 21 TGHLGVKHCFGSGSESGTKSRQTLNTRYDLKITGVKVGQ 59

[Close]

BLAST of Bhi11G002011 vs. NCBI nr
Match: KJB38049.1 (hypothetical protein B456_006G234500, partial [Gossypium raimondii])

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-08
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T+ + V   FG GCESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 18 TRHLGVKHCFGVGCESGTKSRQTLNTRYDLKITGVKVGQ 56

[Close]

BLAST of Bhi11G002011 vs. NCBI nr
Match: XP_020693779.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC110107749, partial [Dendrobium catenatum])

HSP 1 Score: 65.5 bits (158), Expect = 9.5e-08
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 9   DTAKVTSNFKVDWHTLDIRKKDTLVKIGIKLETKRIPVY 48
           +  +V+SNFKVDWH+L+IRKKDTLVK+GIKL +KR+PVY
Sbjct: 482 EKVQVSSNFKVDWHSLNIRKKDTLVKLGIKLRSKRMPVY 520

[Close]

BLAST of Bhi11G002011 vs. NCBI nr
Match: PKU61069.1 (DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 65.5 bits (158), Expect = 9.5e-08
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 9   DTAKVTSNFKVDWHTLDIRKKDTLVKIGIKLETKRIPVY 48
           +  +V+SNFKVDWH+L+IRKKDTLVK+GIKL +KR+PVY
Sbjct: 692 EKVQVSSNFKVDWHSLNIRKKDTLVKLGIKLRSKRMPVY 730

[Close]

BLAST of Bhi11G002011 vs. NCBI nr
Match: ABK94650.1 (unknown [Populus trichocarpa] >EXC01913.1 hypothetical protein L484_018824 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 8.0e-07
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T  + V   FGAG ESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 21 TGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVKVGQ 59

[Close]

BLAST of Bhi11G002011 vs. NCBI nr
Match: PNT12256.1 (hypothetical protein POPTR_011G074100v3 [Populus trichocarpa])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 41 TKRIPVYQDFGAGCESGTKSRQTLNTRYDLKITGVKVGQ 80
          T  + V   FG+G ESGTKSRQTLNTRYDLKITGVKVGQ
Sbjct: 21 TGHLGVKHCFGSGSESGTKSRQTLNTRYDLKITGVKVGQ 59

The following BLAST results are available for this feature:

BLAST of Bhi11G002011 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G002011 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G002011 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2S187\|A0A0D2S187_GOSRA	2.2e-08	79.49	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_006G2...	[more]
tr\|A0A2I0VCD2\|A0A2I0VCD2_9ASPA	6.3e-08	71.79	DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028098 PE=3 SV=1	[more]
tr\|W9RXL8\|W9RXL8_9ROSA	5.3e-07	79.49	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018824 PE=4 SV=1	[more]
tr\|A9PE47\|A9PE47_POPTR	5.3e-07	79.49	Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]
tr\|A0A2K1YGV6\|A0A2K1YGV6_POPTR	6.9e-07	76.92	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G074100v3 PE=...	[more]

BLAST of Bhi11G002011 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB38049.1	3.3e-08	79.49	hypothetical protein B456_006G234500, partial [Gossypium raimondii]	[more]
XP_020693779.1	9.5e-08	71.79	LOW QUALITY PROTEIN: uncharacterized protein LOC110107749, partial [Dendrobium c...	[more]
PKU61069.1	9.5e-08	71.79	DNA polymerase [Dendrobium catenatum]	[more]
ABK94650.1	8.0e-07	79.49	unknown [Populus trichocarpa] >EXC01913.1 hypothetical protein L484_018824 [Moru...	[more]
PNT12256.1	1.0e-06	76.92	hypothetical protein POPTR_011G074100v3 [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002011	Bhi11M002011	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G002011	Wax gourd	wgowgoB011
Bhi11G002011	Cucumber (Gy14) v1	cgywgoB100
Bhi11G002011	Cucumber (Gy14) v1	cgywgoB484
Bhi11G002011	Cucumber (Gy14) v2	cgybwgoB228
Bhi11G002011	Cucumber (Gy14) v2	cgybwgoB507
Bhi11G002011	Cucurbita maxima (Rimu)	cmawgoB0300
Bhi11G002011	Cucurbita maxima (Rimu)	cmawgoB0775
Bhi11G002011	Cucurbita maxima (Rimu)	cmawgoB0990
Bhi11G002011	Cucurbita moschata (Rifu)	cmowgoB0289
Bhi11G002011	Cucurbita moschata (Rifu)	cmowgoB0768
Bhi11G002011	Cucurbita moschata (Rifu)	cmowgoB0988
Bhi11G002011	Cucurbita pepo (Zucchini)	cpewgoB0752
Bhi11G002011	Cucurbita pepo (Zucchini)	cpewgoB1075
Bhi11G002011	Wild cucumber (PI 183967)	cpiwgoB240
Bhi11G002011	Cucumber (Chinese Long) v3	cucwgoB243
Bhi11G002011	Cucumber (Chinese Long) v3	cucwgoB545
Bhi11G002011	Cucumber (Chinese Long) v2	cuwgoB238
Bhi11G002011	Bottle gourd (USVL1VR-Ls)	lsiwgoB294
Bhi11G002011	Bottle gourd (USVL1VR-Ls)	lsiwgoB148
Bhi11G002011	Melon (DHL92) v3.6.1	medwgoB376
Bhi11G002011	Melon (DHL92) v3.6.1	medwgoB622
Bhi11G002011	Melon (DHL92) v3.5.1	mewgoB375
Bhi11G002011	Melon (DHL92) v3.5.1	mewgoB617
Bhi11G002011	Watermelon (Charleston Gray)	wcgwgoB082
Bhi11G002011	Watermelon (97103) v2	wgowmbB005
Bhi11G002011	Watermelon (97103) v1	wgowmB011
Bhi11G002011	Silver-seed gourd	carwgoB0303
Bhi11G002011	Silver-seed gourd	carwgoB0317
Bhi11G002011	Silver-seed gourd	carwgoB0796