Bhi11G001985 (gene) Wax gourd

NameBhi11G001985
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr11 : 64823995 .. 64824297 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCATTATCCAAGGCAGTTACCTTGGCTCAAAAAGCAGAAGCACACAATGAAAAGCACCCGATCTTTATTATCAGTATAAGAAAGGATTTGGCGAAAGCAGTGGTGACAAAGGGAAACAAGTCAGCATCTCAAATCAACCCACAGGTGAACAATATGAGTGAATTTTCTAAACAACAAGGAAAAGTGGATAAAATAGTAACTAAAAGTAATATTGCTAATGGTAAAGCAAACACAATTCATTGTTATAAGTGCAACCAACAAGGTCATTGTTCAAGCGAATGTCCTTTGCGAAAATAA

mRNA sequence

ATGAAATCATTATCCAAGGCAGTTACCTTGGCTCAAAAAGCAGAAGCACACAATGAAAAGCACCCGATCTTTATTATCAGTATAAGAAAGGATTTGGCGAAAGCAGTGGTGACAAAGGGAAACAAGTCAGCATCTCAAATCAACCCACAGGTGAACAATATGAGTGAATTTTCTAAACAACAAGGAAAAGTGGATAAAATAGTAACTAAAAGTAATATTGCTAATGGTAAAGCAAACACAATTCATTGTTATAAGTGCAACCAACAAGGTCATTGTTCAAGCGAATGTCCTTTGCGAAAATAA

Coding sequence (CDS)

ATGAAATCATTATCCAAGGCAGTTACCTTGGCTCAAAAAGCAGAAGCACACAATGAAAAGCACCCGATCTTTATTATCAGTATAAGAAAGGATTTGGCGAAAGCAGTGGTGACAAAGGGAAACAAGTCAGCATCTCAAATCAACCCACAGGTGAACAATATGAGTGAATTTTCTAAACAACAAGGAAAAGTGGATAAAATAGTAACTAAAAGTAATATTGCTAATGGTAAAGCAAACACAATTCATTGTTATAAGTGCAACCAACAAGGTCATTGTTCAAGCGAATGTCCTTTGCGAAAATAA

Protein sequence

MKSLSKAVTLAQKAEAHNEKHPIFIISIRKDLAKAVVTKGNKSASQINPQVNNMSEFSKQQGKVDKIVTKSNIANGKANTIHCYKCNQQGHCSSECPLRK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M001985Bhi11M001985mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 27..100
e-value: 6.6E-6
score: 28.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 83..97
score: 9.834
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 76..99