Bhi11G001905 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G001905
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr11 : 62459613 .. 62459840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGCACAAAGGTCGCCAGAAATTCAGACCGCCACAAGGATACGGTGGTAGAATGGCAGGTGGTGATTTTGGTGCTGGAAATGGTAACTTGACTGTTCTGACTTATCATGATGGTGGTGTTGCTTTGGCCGCGACGTTTGGTTTTGCAGATGCTGCAGCTGCGGTGGTCGATGGTGGGGAGCACGGTGGAAGCTGTGGTGGTGGAGAGTGCGGCGGTGGTTGA

mRNA sequence

ATGGGTGGGCACAAAGGTCGCCAGAAATTCAGACCGCCACAAGGATACGGTGGTAGAATGGCAGGTGGTGATTTTGGTGCTGGAAATGGTAACTTGACTGTTCTGACTTATCATGATGGTGGTGTTGCTTTGGCCGCGACGTTTGGTTTTGCAGATGCTGCAGCTGCGGTGGTCGATGGTGGGGAGCACGGTGGAAGCTGTGGTGGTGGAGAGTGCGGCGGTGGTTGA

Coding sequence (CDS)

ATGGGTGGGCACAAAGGTCGCCAGAAATTCAGACCGCCACAAGGATACGGTGGTAGAATGGCAGGTGGTGATTTTGGTGCTGGAAATGGTAACTTGACTGTTCTGACTTATCATGATGGTGGTGTTGCTTTGGCCGCGACGTTTGGTTTTGCAGATGCTGCAGCTGCGGTGGTCGATGGTGGGGAGCACGGTGGAAGCTGTGGTGGTGGAGAGTGCGGCGGTGGTTGA

Protein sequence

MGGHKGRQKFRPPQGYGGRMAGGDFGAGNGNLTVLTYHDGGVALAATFGFADAAAAVVDGGEHGGSCGGGECGGG

Homology

[Close]

BLAST of Bhi11G001905 vs. TrEMBL
Match: tr|A0A0A0LDL8|A0A0A0LDL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 3  GHKGRQKFRPPQGYGGRMAGGDFGAGNGNLTVLT-YHDGGVALAATFGFADAAAAVVDGG 62
          GHKG +KFRPP+G+GGR   G  GAGNGNL VLT +HDGGVA+ AT GFA AAAAVVD  
Sbjct: 25 GHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHDGGVAMVATLGFAVAAAAVVDVA 84

Query: 63 EHGGSC 68
          EHGGSC
Sbjct: 85 EHGGSC 90

[Close]

BLAST of Bhi11G001905 vs. NCBI nr
Match: KGN58837.1 (hypothetical protein Csa_3G733910 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 3  GHKGRQKFRPPQGYGGRMAGGDFGAGNGNLTVLT-YHDGGVALAATFGFADAAAAVVDGG 62
          GHKG +KFRPP+G+GGR   G  GAGNGNL VLT +HDGGVA+ AT GFA AAAAVVD  
Sbjct: 25 GHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHDGGVAMVATLGFAVAAAAVVDVA 84

Query: 63 EHGGSC 68
          EHGGSC
Sbjct: 85 EHGGSC 90

[Close]

BLAST of Bhi11G001905 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 47/64 (73.44%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 3  GHKGRQKFRPPQGYGGRMAGGDFGAGNGNLTVLTYHDGGVALAATFGFADAAAAVVDGGE 62
          G KG +KFRPP+GY G  A G    GNGNLTVLT HDGGV LA+TFGFA AAAAVVD GE
Sbjct: 20 GDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVVLASTFGFAVAAAAVVDAGE 79

Query: 63 HGGS 67
          HGGS
Sbjct: 80 HGGS 83

The following BLAST results are available for this feature:

BLAST of Bhi11G001905 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G001905 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G001905 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDL8\|A0A0A0LDL8_CUCSA	1.7e-15	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1	[more]

BLAST of Bhi11G001905 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58837.1	2.6e-15	72.73	hypothetical protein Csa_3G733910 [Cucumis sativus]	[more]
XP_023528737.1	1.3e-14	73.44	loricrin-like [Cucurbita pepo subsp. pepo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001905	Bhi11M001905	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G001905	Cucumber (Gy14) v1	cgywgoB358
Bhi11G001905	Cucumber (Gy14) v2	cgybwgoB225
Bhi11G001905	Cucurbita maxima (Rimu)	cmawgoB0298
Bhi11G001905	Cucurbita maxima (Rimu)	cmawgoB0986
Bhi11G001905	Cucurbita moschata (Rifu)	cmowgoB0287
Bhi11G001905	Cucurbita moschata (Rifu)	cmowgoB0983
Bhi11G001905	Cucurbita pepo (Zucchini)	cpewgoB0750
Bhi11G001905	Cucurbita pepo (Zucchini)	cpewgoB1073
Bhi11G001905	Wild cucumber (PI 183967)	cpiwgoB237
Bhi11G001905	Cucumber (Chinese Long) v3	cucwgoB240
Bhi11G001905	Cucumber (Chinese Long) v2	cuwgoB235
Bhi11G001905	Melon (DHL92) v3.6.1	medwgoB374
Bhi11G001905	Melon (DHL92) v3.5.1	mewgoB373
Bhi11G001905	Watermelon (Charleston Gray)	wcgwgoB079
Bhi11G001905	Watermelon (97103) v2	wgowmbB002
Bhi11G001905	Watermelon (97103) v1	wgowmB008
Bhi11G001905	Silver-seed gourd	carwgoB0196
Bhi11G001905	Silver-seed gourd	carwgoB1167
Bhi11G001905	Bottle gourd (USVL1VR-Ls)	lsiwgoB293