Bhi11G001562 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G001562
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	LRR receptor-like kinase family protein
Location	chr11 : 52978266 .. 52978541 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTGCTAATACCTCTTGTCTTCAAGAAATAGATCTTTCTCAGAATAACCTCACTGGAAAACTACTCGATGACTTGGGGAGCTTAAAGGACTTGGTGATACTCAATTTTGATGACAATATACTTGGCAGTGGAAAGGTTGATGACTTGAGTTTTATCAATTTTTTGGCCAATTGTACTGGTTTAAGTATGTTGGGTATTGCTGGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTAGTTATCTTTCAAACCAGTACTCACAAGCCTAA

mRNA sequence

ATGTGTTTTGCTAATACCTCTTGTCTTCAAGAAATAGATCTTTCTCAGAATAACCTCACTGGAAAACTACTCGATGACTTGGGGAGCTTAAAGGACTTGGTGATACTCAATTTTGATGACAATATACTTGGCAGTGGAAAGGTTGATGACTTGAGTTTTATCAATTTTTTGGCCAATTGTACTGGTTTAAGTATGTTGGGTATTGCTGGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTAGTTATCTTTCAAACCAGTACTCACAAGCCTAA

Coding sequence (CDS)

ATGTGTTTTGCTAATACCTCTTGTCTTCAAGAAATAGATCTTTCTCAGAATAACCTCACTGGAAAACTACTCGATGACTTGGGGAGCTTAAAGGACTTGGTGATACTCAATTTTGATGACAATATACTTGGCAGTGGAAAGGTTGATGACTTGAGTTTTATCAATTTTTTGGCCAATTGTACTGGTTTAAGTATGTTGGGTATTGCTGGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTAGTTATCTTTCAAACCAGTACTCACAAGCCTAA

Protein sequence

MCFANTSCLQEIDLSQNNLTGKLLDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQYSQA

Homology

[Close]

BLAST of Bhi11G001562 vs. Swiss-Prot
Match: sp|C0LGP4|Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 28  GSLKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLS 86
           G++ +L +L    N LGS    DL F+  L NCT L  LGI  N  GG LP SI+ LS
Sbjct: 303 GNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLS 360

[Close]

BLAST of Bhi11G001562 vs. TAIR10
Match: AT3G47570.1 (Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 28  GSLKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLS 86
           G++ +L +L    N LGS    DL F+  L NCT L  LGI  N  GG LP SI+ LS
Sbjct: 303 GNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLS 360

[Close]

BLAST of Bhi11G001562 vs. TAIR10
Match: AT3G47580.1 (Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-05
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 36  LNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
           L+  +N LGS    DL FI+ L NCT L +L +     GG LP+SI+ +S +
Sbjct: 312 LDLSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTE 363

[Close]

BLAST of Bhi11G001562 vs. TAIR10
Match: AT3G47090.1 (Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.1e-04
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 31  KDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
           ++L  L   +N LGS    DL+F++ L NC+ L  L ++ N  GG LP+SI  +S +
Sbjct: 307 ENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTE 363

[Close]

BLAST of Bhi11G001562 vs. TrEMBL
Match: tr|A0A1S4DUI3|A0A1S4DUI3_CUCME (uncharacterized protein LOC103486310 OS=Cucumis melo OX=3656 GN=LOC103486310 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 30   LKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
            LKDL  LNF+DNILGSG+V DL+FI+ LANCT L +LG++ NHFGGVLPSSI  LS+Q
Sbjct: 1337 LKDLERLNFEDNILGSGRVGDLNFISSLANCTSLRVLGLSWNHFGGVLPSSIGNLSSQ 1394

[Close]

BLAST of Bhi11G001562 vs. TrEMBL
Match: tr|A0A127AVH1|A0A127AVH1_VERFO (LRR-RLK (Fragment) OS=Vernicia fordii OX=73154 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-13
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 3   FANTSCLQEIDLSQNNLTGKLLDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLANCTG 62
           F N S L  +DLS N  TG++  +LG  +DLV LN + N LGS   +DLSF+  L NC+ 
Sbjct: 17  FTNASQLDILDLSDNIFTGQVPKNLGERQDLVWLNLEHNFLGSNASEDLSFLISLPNCSN 76

Query: 63  LSMLGIAGNHFGGVLPSSISYLSNQYSQ 91
           L +LG  GN+FGGVLP+SI+ LS    Q
Sbjct: 77  LKILGFDGNNFGGVLPNSIANLSTNLRQ 104

[Close]

BLAST of Bhi11G001562 vs. TrEMBL
Match: tr|A0A0A0L9X2|A0A0A0L9X2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731800 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.7e-13
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 30  LKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
           LKDL  LNF+DNILG+G+V DL+FI+ LANCT L +LG++ NHFGGVLPSSI  LS+Q
Sbjct: 352 LKDLERLNFEDNILGTGRVGDLNFISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQ 409

[Close]

BLAST of Bhi11G001562 vs. TrEMBL
Match: tr|A0A0A0LFC3|A0A0A0LFC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731860 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.7e-13
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 29  SLKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
           +LK+LV  NFDDN LGSGKVDDL+ I  L NCT LS+LG++GN FGG LP SIS LSNQ
Sbjct: 298 NLKELVRFNFDDNRLGSGKVDDLNVIRSLTNCTSLSVLGLSGNRFGGTLPLSISNLSNQ 356

[Close]

BLAST of Bhi11G001562 vs. TrEMBL
Match: tr|A0A1S4DUI0|A0A1S4DUI0_CUCME (putative receptor-like protein kinase At3g47110 OS=Cucumis melo OX=3656 GN=LOC107990601 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 29  SLKDLVILNFDDNILGSGKVDDLSFINFLANCTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
           +LK+LV  NFDDN LGSG VDDL+ I  L NCT LS+LG++GN FGG LP SI  LSNQ
Sbjct: 298 NLKELVRFNFDDNRLGSGNVDDLNVIRSLTNCTSLSVLGLSGNRFGGTLPLSIGNLSNQ 356

[Close]

BLAST of Bhi11G001562 vs. NCBI nr
Match: PQP95022.1 (putative LRR receptor-like serine/threonine-protein kinase [Prunus yedoensis var. nudiflora])

HSP 1 Score: 93.2 bits (230), Expect = 4.9e-16
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1   MCFANTSCLQEIDLSQNNLTGKL-LDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLAN 60
           +  +N S LQ +D ++N LTG L  ++L +L+ LV LNFD N LGSGK  DL+F++FLAN
Sbjct: 53  LSLSNASRLQVLDFAENGLTGPLPAENLATLQSLVRLNFDQNRLGSGKAGDLNFLSFLAN 112

Query: 61  CTGLSMLGIAGNHFGGVLPSSISYLSNQ 88
           CT L MLG+  NHFGG LP+SI+ LS Q
Sbjct: 113 CTSLEMLGLNLNHFGGELPASIANLSTQ 140

[Close]

BLAST of Bhi11G001562 vs. NCBI nr
Match: PQM33685.1 (putative LRR receptor-like serine/threonine-protein kinase [Prunus yedoensis var. nudiflora])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3  FANTSCLQEIDLSQNNLTGKL-LDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLANCT 62
          ++N+S LQ++D   N LTG L  ++LG L+ LV +NF  N LGSGK  D +F++FLANCT
Sbjct: 12 WSNSSRLQKLDCGGNGLTGTLPAENLGRLRSLVWINFSRNRLGSGKAGDSNFLSFLANCT 71

Query: 63 GLSMLGIAGNHFGGVLPSSISYLSNQ 88
          GL  LG+  NHFGG LP SI+ LS Q
Sbjct: 72 GLEDLGLDNNHFGGELPRSIANLSTQ 97

[Close]

BLAST of Bhi11G001562 vs. NCBI nr
Match: XP_022765841.1 (putative receptor-like protein kinase At3g47110 [Durio zibethinus])

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 4   ANTSCLQEIDLSQNNLTGKLLDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLANCTGL 63
           AN S  Q ID ++N L     ++LGSL DL+ LNFDDN LG+GK  DLSF NFL N   L
Sbjct: 291 ANASKRQIIDFAENGLXXXXXENLGSLGDLIRLNFDDNKLGNGKSGDLSFFNFLTNFFTL 350

Query: 64  SMLGIAGNHFGGVLPSSISYLSNQ 88
            +LG+AGN FGG LPS ++ LS++
Sbjct: 351 EVLGLAGNRFGGELPSPVANLSDK 374

[Close]

BLAST of Bhi11G001562 vs. NCBI nr
Match: XP_021830336.1 (probable LRR receptor-like serine/threonine-protein kinase At3g47570, partial [Prunus avium])

HSP 1 Score: 86.3 bits (212), Expect = 6.0e-14
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 4   ANTSCLQEIDLSQNNLTGKL-LDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLANCTG 63
           +N S L+++D ++N LTGKL  ++ GSL+ L  LNFDDN LGSGK  DLS ++FLANCT 
Sbjct: 26  SNASRLRKLDFAENGLTGKLPAENFGSLQSLSRLNFDDNRLGSGKTGDLSSLSFLANCTN 85

Query: 64  LSMLGIAGNHFGGVLPSSISYLS 86
           L +   + N FGG LP SIS LS
Sbjct: 86  LEVFSFSRNRFGGELPESISNLS 108

[Close]

BLAST of Bhi11G001562 vs. NCBI nr
Match: XP_008370142.1 (PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 4   ANTSCLQEIDLSQNNLTGKL-LDDLGSLKDLVILNFDDNILGSGKVDDLSFINFLANCTG 63
           +N S L  +D ++N LTGKL  ++ GSL+ L+ LNFDDN LGSGK  DL+ ++FLANCT 
Sbjct: 138 SNASKLLFLDFAENGLTGKLPAENFGSLRSLLRLNFDDNRLGSGKTGDLNSLSFLANCTN 197

Query: 64  LSMLGIAGNHFGGVLPSSISYLSNQ 88
           L +L  + N FGG LP SI+ LS +
Sbjct: 198 LEVLSFSRNRFGGELPESIANLSTK 222

The following BLAST results are available for this feature:

BLAST of Bhi11G001562 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|C0LGP4\|Y3475_ARATH	1.0e-04	46.55	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidop...	[more]

BLAST of Bhi11G001562 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47570.1	5.6e-06	46.55	Leucine-rich repeat protein kinase family protein	[more]
AT3G47580.1	3.6e-05	42.31	Leucine-rich repeat protein kinase family protein	[more]
AT3G47090.1	3.1e-04	38.60	Leucine-rich repeat protein kinase family protein	[more]

BLAST of Bhi11G001562 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUI3\|A0A1S4DUI3_CUCME	5.7e-13	70.69	uncharacterized protein LOC103486310 OS=Cucumis melo OX=3656 GN=LOC103486310 PE=...	[more]
tr\|A0A127AVH1\|A0A127AVH1_VERFO	7.4e-13	50.00	LRR-RLK (Fragment) OS=Vernicia fordii OX=73154 PE=2 SV=1	[more]
tr\|A0A0A0L9X2\|A0A0A0L9X2_CUCSA	9.7e-13	68.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731800 PE=3 SV=1	[more]
tr\|A0A0A0LFC3\|A0A0A0LFC3_CUCSA	9.7e-13	69.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731860 PE=3 SV=1	[more]
tr\|A0A1S4DUI0\|A0A1S4DUI0_CUCME	1.1e-11	66.10	putative receptor-like protein kinase At3g47110 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Bhi11G001562 vs. NCBI nr


Match Name	E-value	Identity	Description
PQP95022.1	4.9e-16	55.68	putative LRR receptor-like serine/threonine-protein kinase [Prunus yedoensis var...	[more]
PQM33685.1	1.2e-14	54.65	putative LRR receptor-like serine/threonine-protein kinase [Prunus yedoensis var...	[more]
XP_022765841.1	4.6e-14	54.76	putative receptor-like protein kinase At3g47110 [Durio zibethinus]	[more]
XP_021830336.1	6.0e-14	55.42	probable LRR receptor-like serine/threonine-protein kinase At3g47570, partial [P...	[more]
XP_008370142.1	1.7e-13	52.94	PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001562	Bhi11M001562	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..89 e-value: 3.8E-13 score: 50.4
None	No IPR available	PANTHER	PTHR43887:SF18	SUBFAMILY NOT NAMED	coord: 3..88
None	No IPR available	PANTHER	PTHR43887	FAMILY NOT NAMED	coord: 3..88
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 3..86

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G001562	Wax gourd	wgowgoB004
Bhi11G001562	Wax gourd	wgowgoB013
Bhi11G001562	Wax gourd	wgowgoB016
Bhi11G001562	Cucumber (Gy14) v1	cgywgoB063
Bhi11G001562	Cucumber (Gy14) v1	cgywgoB260
Bhi11G001562	Cucumber (Gy14) v1	cgywgoB359
Bhi11G001562	Cucumber (Gy14) v1	cgywgoB742
Bhi11G001562	Cucumber (Gy14) v2	cgybwgoB210
Bhi11G001562	Cucumber (Gy14) v2	cgybwgoB347
Bhi11G001562	Cucumber (Gy14) v2	cgybwgoB411
Bhi11G001562	Cucurbita maxima (Rimu)	cmawgoB0290
Bhi11G001562	Cucurbita maxima (Rimu)	cmawgoB0554
Bhi11G001562	Cucurbita maxima (Rimu)	cmawgoB0772
Bhi11G001562	Cucurbita maxima (Rimu)	cmawgoB0819
Bhi11G001562	Cucurbita maxima (Rimu)	cmawgoB0976
Bhi11G001562	Cucurbita maxima (Rimu)	cmawgoB1046
Bhi11G001562	Cucurbita moschata (Rifu)	cmowgoB0280
Bhi11G001562	Cucurbita moschata (Rifu)	cmowgoB0765
Bhi11G001562	Cucurbita moschata (Rifu)	cmowgoB0815
Bhi11G001562	Cucurbita moschata (Rifu)	cmowgoB0972
Bhi11G001562	Cucurbita moschata (Rifu)	cmowgoB1040
Bhi11G001562	Cucurbita moschata (Rifu)	cmowgoB1039
Bhi11G001562	Cucurbita pepo (Zucchini)	cpewgoB0068
Bhi11G001562	Cucurbita pepo (Zucchini)	cpewgoB0482
Bhi11G001562	Cucurbita pepo (Zucchini)	cpewgoB0582
Bhi11G001562	Cucurbita pepo (Zucchini)	cpewgoB0744
Bhi11G001562	Cucurbita pepo (Zucchini)	cpewgoB1086
Bhi11G001562	Wild cucumber (PI 183967)	cpiwgoB219
Bhi11G001562	Wild cucumber (PI 183967)	cpiwgoB363
Bhi11G001562	Wild cucumber (PI 183967)	cpiwgoB437
Bhi11G001562	Wild cucumber (PI 183967)	cpiwgoB533
Bhi11G001562	Cucumber (Chinese Long) v3	cucwgoB224
Bhi11G001562	Cucumber (Chinese Long) v3	cucwgoB365
Bhi11G001562	Cucumber (Chinese Long) v3	cucwgoB446
Bhi11G001562	Cucumber (Chinese Long) v3	cucwgoB544
Bhi11G001562	Cucumber (Chinese Long) v2	cuwgoB219
Bhi11G001562	Cucumber (Chinese Long) v2	cuwgoB360
Bhi11G001562	Cucumber (Chinese Long) v2	cuwgoB435
Bhi11G001562	Cucumber (Chinese Long) v2	cuwgoB530
Bhi11G001562	Bottle gourd (USVL1VR-Ls)	lsiwgoB150
Bhi11G001562	Bottle gourd (USVL1VR-Ls)	lsiwgoB297
Bhi11G001562	Bottle gourd (USVL1VR-Ls)	lsiwgoB299
Bhi11G001562	Bottle gourd (USVL1VR-Ls)	lsiwgoB348
Bhi11G001562	Melon (DHL92) v3.6.1	medwgoB051
Bhi11G001562	Melon (DHL92) v3.6.1	medwgoB318
Bhi11G001562	Melon (DHL92) v3.6.1	medwgoB381
Bhi11G001562	Melon (DHL92) v3.5.1	mewgoB052
Bhi11G001562	Melon (DHL92) v3.5.1	mewgoB319
Bhi11G001562	Melon (DHL92) v3.5.1	mewgoB379
Bhi11G001562	Watermelon (Charleston Gray)	wcgwgoB093
Bhi11G001562	Watermelon (Charleston Gray)	wcgwgoB137
Bhi11G001562	Watermelon (Charleston Gray)	wcgwgoB374
Bhi11G001562	Watermelon (Charleston Gray)	wcgwgoB555
Bhi11G001562	Watermelon (97103) v2	wgowmbB014
Bhi11G001562	Watermelon (97103) v2	wgowmbB029
Bhi11G001562	Watermelon (97103) v2	wgowmbB035
Bhi11G001562	Watermelon (97103) v2	wgowmbB044
Bhi11G001562	Watermelon (97103) v1	wgowmB020
Bhi11G001562	Watermelon (97103) v1	wgowmB042
Bhi11G001562	Watermelon (97103) v1	wgowmB048
Bhi11G001562	Watermelon (97103) v1	wgowmB054
Bhi11G001562	Silver-seed gourd	carwgoB0099
Bhi11G001562	Silver-seed gourd	carwgoB0691
Bhi11G001562	Silver-seed gourd	carwgoB0200
Bhi11G001562	Silver-seed gourd	carwgoB0664
Bhi11G001562	Silver-seed gourd	carwgoB0690
Bhi11G001562	Silver-seed gourd	carwgoB1166