Bhi11G001394 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G001394
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location	chr11 : 47081077 .. 47081541 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAGAACGGTAGATTCAAGCTTCACACAACATGCAACAGGAAATGGACTCCTCCTCCTCAAGGGTCATTTTCTCTTTAACGTTGATGCTGCGTGGACCAAAATCGTACTTCTACAGGTCTGAGAGTTACTATTTAAAGCTATGATGGTTTGGTAATTGCGTTACTTTCAAAGAATCTGGCCATGGATTTTACTTCCTCGGTTGCTGAACTCCTTGCAATAATCAAAGGCTTGAAATTGGCTCAATCACTTGGAATTTCTAATCTTCTGGTTGATTCAGACTGCTTTCTGGCTGTAAATCTCATTAACAAGGGTCATGTGGCTTTGCACGAGATCGAAAGTTGTGTCGATGAAGTGTTGTCACTGAATAAGGGCTTCAATTGTATTTCTTTTATCTATGTAAATCGGTTGTGTAATCGGCTAGCTGTTGCTTTAGCAAAAGAAGCTAGGGCCAATCATTAG

mRNA sequence

ATGACTCAGAACGGTAGATTCAAGCTTCACACAACATGCAACAGGAAATGGACTCCTCCTCCTCAAGGCTATGATGGTTTGGTAATTGCGTTACTTTCAAAGAATCTGGCCATGGATTTTACTTCCTCGGTTGCTGAACTCCTTGCAATAATCAAAGGCTTGAAATTGGCTCAATCACTTGGAATTTCTAATCTTCTGGTTGATTCAGACTGCTTTCTGGCTGTAAATCTCATTAACAAGGGTCATGTGGCTTTGCACGAGATCGAAAGTTGTGTCGATGAAGTGTTGTCACTGAATAAGGGCTTCAATTGTATTTCTTTTATCTATGTAAATCGGTTGTGTAATCGGCTAGCTGTTGCTTTAGCAAAAGAAGCTAGGGCCAATCATTAG

Coding sequence (CDS)

ATGACTCAGAACGGTAGATTCAAGCTTCACACAACATGCAACAGGAAATGGACTCCTCCTCCTCAAGGCTATGATGGTTTGGTAATTGCGTTACTTTCAAAGAATCTGGCCATGGATTTTACTTCCTCGGTTGCTGAACTCCTTGCAATAATCAAAGGCTTGAAATTGGCTCAATCACTTGGAATTTCTAATCTTCTGGTTGATTCAGACTGCTTTCTGGCTGTAAATCTCATTAACAAGGGTCATGTGGCTTTGCACGAGATCGAAAGTTGTGTCGATGAAGTGTTGTCACTGAATAAGGGCTTCAATTGTATTTCTTTTATCTATGTAAATCGGTTGTGTAATCGGCTAGCTGTTGCTTTAGCAAAAGAAGCTAGGGCCAATCATTAG

Protein sequence

MTQNGRFKLHTTCNRKWTPPPQGYDGLVIALLSKNLAMDFTSSVAELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNCISFIYVNRLCNRLAVALAKEARANH

Homology

[Close]

BLAST of Bhi11G001394 vs. TAIR10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 41.6 bits (96), Expect = 4.3e-04
Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 44  VAELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFN 103
           +AE +A+   L+ AQS+GI+ L + SD    +  I     +  E    + ++L+L+ GF 
Sbjct: 75  MAEAIALFLALQYAQSIGITKLSMASDSQQLITAITSESPST-EFYGIIFDILNLSLGFA 134

Query: 104 CISFIYVNRLCNRLAVALAKEA 126
            +SF +V R  NR+A  LAK +
Sbjct: 135 DVSFSFVPRSENRVADELAKSS 155

[Close]

BLAST of Bhi11G001394 vs. TrEMBL
Match: tr|A0A251N8A4|A0A251N8A4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G076800 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 38/141 (26.95%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 10  HTTCNRKWTPPPQG-------------------------YDGLVIALLSKNLAMDFTSSV 69
           H+  +  W PPP G                           G ++  +S  +   F++ +
Sbjct: 28  HSPSSTHWCPPPPGKLKLNVDGACSTSVWKRELGAVVRNVHGDLMGAISVPITRCFSAKI 87

Query: 70  AELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNC 126
            ELLAI +GL+ A   G ++L+V+ D   A+N I  G  A       ++ +  L++ F+ 
Sbjct: 88  IELLAIREGLQFAWEDGYNSLVVELDAKNAINDIVSGTEAFRVAGGIINNIHMLSRNFDF 147

[Close]

BLAST of Bhi11G001394 vs. TrEMBL
Match: tr|M5VTB6|M5VTB6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa025995mg PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 38/141 (26.95%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 10  HTTCNRKWTPPPQG-------------------------YDGLVIALLSKNLAMDFTSSV 69
           H+  +  W PPP G                           G ++  +S  +   F++ +
Sbjct: 38  HSPSSTHWCPPPPGKLKLNVDGACSTSVWKRELGAVVRNVHGDLMGAISVPITRCFSAKI 97

Query: 70  AELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNC 126
            ELLAI +GL+ A   G ++L+V+ D   A+N I  G  A       ++ +  L++ F+ 
Sbjct: 98  IELLAIREGLQFAWEDGYNSLVVELDAKNAINDIVSGTEAFRVAGGIINNIHMLSRNFDF 157

[Close]

BLAST of Bhi11G001394 vs. TrEMBL
Match: tr|A0A2P4M3X2|A0A2P4M3X2_QUESU (Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_29590 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 35/135 (25.93%), Postives = 63/135 (46.67%), Query Frame = 0


Query: 16  KWTPPPQGY-------------------------DGLVIALLSKNLAMDFTSSVAELLAI 75
           +W+PPP G+                          GL++A  +  + +  +  + E+LA 
Sbjct: 645 RWSPPPLGWAKVNFDGALFKDKRLAGLGGVIRNDKGLIMAAFTHTIPLPTSVEMVEVLAA 704

Query: 76  IKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNCISFIYV 126
              L LA+ L ++ + ++ D  + VN ++KG +    I   V ++  L+  F C+SF + 
Sbjct: 705 RSALSLAKDLCLNMVQLEGDSEVVVNALSKGGMESSSIGHIVKDISLLSSAFQCLSFSHT 764

[Close]

BLAST of Bhi11G001394 vs. TrEMBL
Match: tr|A0A2P4M4B4|A0A2P4M4B4_QUESU (Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_44877 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 35/135 (25.93%), Postives = 63/135 (46.67%), Query Frame = 0


Query: 16  KWTPPPQGY-------------------------DGLVIALLSKNLAMDFTSSVAELLAI 75
           +W+PPP G+                          GL++A  +  + +  +  + E+LA 
Sbjct: 188 EWSPPPLGWAKVNFDGAMFKDKNLARLSGVIRNDKGLIMATFTHTIPLPTSVEMVEVLAA 247

Query: 76  IKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNCISFIYV 126
              L LA+ L ++ + ++SD  + VN ++KG +        V ++  L+  F C+SF + 
Sbjct: 248 RSALSLAKDLCLNKVQLESDSEVIVNALSKGGMDSSSFGHVVKDISLLSSAFQCLSFSHT 307

[Close]

BLAST of Bhi11G001394 vs. TrEMBL
Match: tr|A0A2P4LHM1|A0A2P4LHM1_QUESU (Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_64527 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 26  GLVIALLSKNLAMDFTSSVAELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVAL 85
           GLV+A L++ + +  +  + E+L   + L  A+ LG  +L+V  D  + +N IN  ++A 
Sbjct: 212 GLVMAALTQQIPLPASVKMVEVLVARRALWFAKELGFHSLIVKGDLEIIINSINGDNMAH 271

Query: 86  HEIESCVDEVLSLNKGFNCISFIYVNRLCNRLAVALAKEARAN 129
            E    + ++  L   FNCISF ++ R  N LA  LA+ A  N
Sbjct: 272 SEFGHILQDIKFLYSFFNCISFQHIRRQGNGLAHKLARRAIPN 314

[Close]

BLAST of Bhi11G001394 vs. NCBI nr
Match: XP_023912496.1 (uncharacterized protein LOC112024088 [Quercus suber])

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 46/140 (32.86%), Postives = 61/140 (43.57%), Query Frame = 0


Query: 14  NRKWTPPPQGY-------------------------DGLVIALLSKNLAMDFTSSVAELL 73
           N +WTPPP G                           G+VIA   K L   F+ S  E L
Sbjct: 261 NNRWTPPPPGVFKINVDGATSVDSRNSSVGAIIRDSCGVVIAACGKYLQGQFSVSEVEAL 320

Query: 74  AIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNCISFI 129
           A+  G+ LAQS+ +S + V+S+    V+ IN G      I      +L+L   F      
Sbjct: 321 AVESGILLAQSMKLSQISVESNALFVVSSIN-GKFIDGSIGHLFQGILTLLNSFTSWKVN 380

[Close]

BLAST of Bhi11G001394 vs. NCBI nr
Match: XP_021725358.1 (uncharacterized protein LOC110692634 [Chenopodium quinoa])

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 15  RKWTPPPQGY----------------DGLVIALL---SKNLAMDFTSSVAELLAIIKGLK 74
           R W+PPP G+                 G V  +L   ++     +   +AE  AI+ GLK
Sbjct: 123 RIWSPPPIGFIKINCDACLRDKGWVGVGYVAQVLFDGTQRTRGSWPPEIAECKAILFGLK 182

Query: 75  LAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNCISFIYVNRLCN 124
            AQ  G+ NL+V+SD  + +N ++K  +   +++  +D+V+ +NK F+ +S+ +V R  N
Sbjct: 183 QAQRYGVKNLVVESDSQVVINRLSKSVIYFSDLKFVLDDVMFVNKDFDYVSWSHVRRDGN 242

[Close]

BLAST of Bhi11G001394 vs. NCBI nr
Match: XP_021807757.1 (uncharacterized protein LOC110751579 [Prunus avium])

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 39/143 (27.27%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 8   KLHTTCNRKWTPPPQG-------------------------YDGLVIALLSKNLAMDFTS 67
           + H   +  W PPP G                           G ++  +S  +   F++
Sbjct: 71  RTHPPSSTHWCPPPPGKLKLNVDGACSTSVWKRGLGAVVRNVHGDLMGAISVPITGCFSA 130

Query: 68  SVAELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGF 126
            V ELLAI +GL+     G  +L+V++D   A+N I  G  A       ++++  L++ F
Sbjct: 131 KVTELLAIREGLQFTWETGYDSLVVETDAKNAINDIISGTEAFGVAGGIINDIHMLSRNF 190

[Close]

BLAST of Bhi11G001394 vs. NCBI nr
Match: ONH95551.1 (hypothetical protein PRUPE_7G076800 [Prunus persica])

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-05
Identity = 38/141 (26.95%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 10  HTTCNRKWTPPPQG-------------------------YDGLVIALLSKNLAMDFTSSV 69
           H+  +  W PPP G                           G ++  +S  +   F++ +
Sbjct: 28  HSPSSTHWCPPPPGKLKLNVDGACSTSVWKRELGAVVRNVHGDLMGAISVPITRCFSAKI 87

Query: 70  AELLAIIKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNC 126
            ELLAI +GL+ A   G ++L+V+ D   A+N I  G  A       ++ +  L++ F+ 
Sbjct: 88  IELLAIREGLQFAWEDGYNSLVVELDAKNAINDIVSGTEAFRVAGGIINNIHMLSRNFDF 147

[Close]

BLAST of Bhi11G001394 vs. NCBI nr
Match: POF12161.1 (putative ribonuclease h protein [Quercus suber])

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-05
Identity = 35/135 (25.93%), Postives = 63/135 (46.67%), Query Frame = 0


Query: 16  KWTPPPQGY-------------------------DGLVIALLSKNLAMDFTSSVAELLAI 75
           +W+PPP G+                          GL++A  +  + +  +  + E+LA 
Sbjct: 645 RWSPPPLGWAKVNFDGALFKDKRLAGLGGVIRNDKGLIMAAFTHTIPLPTSVEMVEVLAA 704

Query: 76  IKGLKLAQSLGISNLLVDSDCFLAVNLINKGHVALHEIESCVDEVLSLNKGFNCISFIYV 126
              L LA+ L ++ + ++ D  + VN ++KG +    I   V ++  L+  F C+SF + 
Sbjct: 705 RSALSLAKDLCLNMVQLEGDSEVVVNALSKGGMESSSIGHIVKDISLLSSAFQCLSFSHT 764

The following BLAST results are available for this feature:

BLAST of Bhi11G001394 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G001394 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09490.1	4.3e-04	34.15	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Bhi11G001394 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251N8A4\|A0A251N8A4_PRUPE	3.6e-05	26.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G076800 PE=4 SV=1	[more]
tr\|M5VTB6\|M5VTB6_PRUPE	3.6e-05	26.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa025995mg PE=4 SV=1	[more]
tr\|A0A2P4M3X2\|A0A2P4M3X2_QUESU	3.6e-05	25.93	Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_29590 PE=4 SV...	[more]
tr\|A0A2P4M4B4\|A0A2P4M4B4_QUESU	4.8e-05	25.93	Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_44877 PE=4 SV...	[more]
tr\|A0A2P4LHM1\|A0A2P4LHM1_QUESU	4.8e-05	33.01	Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_64527 PE=4 SV...	[more]

BLAST of Bhi11G001394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023912496.1	2.5e-05	32.86	uncharacterized protein LOC112024088 [Quercus suber]	[more]
XP_021725358.1	3.2e-05	28.91	uncharacterized protein LOC110692634 [Chenopodium quinoa]	[more]
XP_021807757.1	3.2e-05	27.27	uncharacterized protein LOC110751579 [Prunus avium]	[more]
ONH95551.1	5.5e-05	26.95	hypothetical protein PRUPE_7G076800 [Prunus persica]	[more]
POF12161.1	5.5e-05	25.93	putative ribonuclease h protein [Quercus suber]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001394	Bhi11M001394	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 21..129 e-value: 3.5E-14 score: 55.0
None	No IPR available	PFAM	PF13456	RVT_3	coord: 26..125 e-value: 1.6E-18 score: 66.6
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 13..127
None	No IPR available	CDD	cd06222	RNase_H_like	coord: 45..123 e-value: 8.31887E-16 score: 67.7244
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 37..127

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G001394	Wax gourd	wgowgoB001
Bhi11G001394	Cucumber (Gy14) v1	cgywgoB385
Bhi11G001394	Cucumber (Gy14) v1	cgywgoB676
Bhi11G001394	Cucumber (Gy14) v2	cgybwgoB226
Bhi11G001394	Cucumber (Gy14) v2	cgybwgoB407
Bhi11G001394	Cucurbita maxima (Rimu)	cmawgoB0095
Bhi11G001394	Cucurbita maxima (Rimu)	cmawgoB0299
Bhi11G001394	Cucurbita maxima (Rimu)	cmawgoB0364
Bhi11G001394	Cucurbita maxima (Rimu)	cmawgoB0816
Bhi11G001394	Cucurbita moschata (Rifu)	cmowgoB0089
Bhi11G001394	Cucurbita moschata (Rifu)	cmowgoB0288
Bhi11G001394	Cucurbita moschata (Rifu)	cmowgoB0357
Bhi11G001394	Cucurbita moschata (Rifu)	cmowgoB0812
Bhi11G001394	Cucurbita moschata (Rifu)	cmowgoB0918
Bhi11G001394	Cucurbita pepo (Zucchini)	cpewgoB0216
Bhi11G001394	Cucurbita pepo (Zucchini)	cpewgoB0479
Bhi11G001394	Cucurbita pepo (Zucchini)	cpewgoB0826
Bhi11G001394	Cucurbita pepo (Zucchini)	cpewgoB0751
Bhi11G001394	Wild cucumber (PI 183967)	cpiwgoB238
Bhi11G001394	Wild cucumber (PI 183967)	cpiwgoB433
Bhi11G001394	Cucumber (Chinese Long) v3	cucwgoB241
Bhi11G001394	Cucumber (Chinese Long) v3	cucwgoB442
Bhi11G001394	Cucumber (Chinese Long) v2	cuwgoB236
Bhi11G001394	Cucumber (Chinese Long) v2	cuwgoB431
Bhi11G001394	Bottle gourd (USVL1VR-Ls)	lsiwgoB205
Bhi11G001394	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G001394	Bottle gourd (USVL1VR-Ls)	lsiwgoB583
Bhi11G001394	Melon (DHL92) v3.6.1	medwgoB000
Bhi11G001394	Melon (DHL92) v3.6.1	medwgoB375
Bhi11G001394	Melon (DHL92) v3.5.1	mewgoB002
Bhi11G001394	Melon (DHL92) v3.5.1	mewgoB374
Bhi11G001394	Watermelon (Charleston Gray)	wcgwgoB012
Bhi11G001394	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G001394	Watermelon (97103) v2	wgowmbB001
Bhi11G001394	Watermelon (97103) v2	wgowmbB045
Bhi11G001394	Watermelon (97103) v2	wgowmbB052
Bhi11G001394	Watermelon (97103) v1	wgowmB005
Bhi11G001394	Watermelon (97103) v1	wgowmB007
Bhi11G001394	Silver-seed gourd	carwgoB0338
Bhi11G001394	Silver-seed gourd	carwgoB0450
Bhi11G001394	Silver-seed gourd	carwgoB0520
Bhi11G001394	Silver-seed gourd	carwgoB0610
Bhi11G001394	Silver-seed gourd	carwgoB0800