Bhi11G001342 (gene) Wax gourd

Overview
NameBhi11G001342
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr11 : 45595211 .. 45595522 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACCCCATGTGCAGATGAGGTTGTGAATGAGGATGAAAATGTAGATGTATCTCCATCAAATTATACTACAAAAGATCAAAACAGTAGGAAGAGAAAAGGTAACGACGACGATCCTTATGTCAAGTGTATATACTCTGGTGCGTCATATACTAGTCCTTCAAAGGGGAATGGAATGGAAAATGTGGAAGCACATGCCGAGAACTATCGCGACAAGTATCCTTTTCATAGCACTTGTTCTAATAATTCATATGAAGAAGGAAGGGAAGATGATGAGGAGGAAGAGGTAGGAGAGGATTCAAAAAGTTAG

mRNA sequence

ATGAAGACCCCATGTGCAGATGAGGTTGTGAATGAGGATGAAAATGTAGATGTATCTCCATCAAATTATACTACAAAAGATCAAAACAGTAGGAAGAGAAAAGGTAACGACGACGATCCTTATGTCAAGTGTATATACTCTGGTGCGTCATATACTAGTCCTTCAAAGGGGAATGGAATGGAAAATGTGGAAGCACATGCCGAGAACTATCGCGACAAGTATCCTTTTCATAGCACTTGTTCTAATAATTCATATGAAGAAGGAAGGGAAGATGATGAGGAGGAAGAGGTAGGAGAGGATTCAAAAAGTTAG

Coding sequence (CDS)

ATGAAGACCCCATGTGCAGATGAGGTTGTGAATGAGGATGAAAATGTAGATGTATCTCCATCAAATTATACTACAAAAGATCAAAACAGTAGGAAGAGAAAAGGTAACGACGACGATCCTTATGTCAAGTGTATATACTCTGGTGCGTCATATACTAGTCCTTCAAAGGGGAATGGAATGGAAAATGTGGAAGCACATGCCGAGAACTATCGCGACAAGTATCCTTTTCATAGCACTTGTTCTAATAATTCATATGAAGAAGGAAGGGAAGATGATGAGGAGGAAGAGGTAGGAGAGGATTCAAAAAGTTAG

Protein sequence

MKTPCADEVVNEDENVDVSPSNYTTKDQNSRKRKGNDDDPYVKCIYSGASYTSPSKGNGMENVEAHAENYRDKYPFHSTCSNNSYEEGREDDEEEEVGEDSKS
Homology
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BLAST of Bhi11G001342 vs. NCBI nr
Match: XP_022152195.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia] >XP_022152196.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 9.5e-08
Identity = 51/104 (49.04%), Postives = 56/104 (53.85%), Query Frame = 0 

Query: 1   MKTPCADEV----VNEDENVDVSPSNYTTKDQNSRKRKGNDDDPYVKCIYSGASYTSPSK 60
           M TPC +EV    V EDENV VSP   T K QN  K KGN D P+V+    GA YTS SK
Sbjct: 1   MNTPCEEEVEVKDVKEDENVGVSPLTATMKGQNGTKEKGNVDAPHVERKNCGALYTSHSK 60

Query: 61  GNGMENVEAHAENYRDKYPFHSTCSN---NSYEEGREDDEEEEV 98
            N ME      E Y DK+P H T  N   N+ EE      EEEV
Sbjct: 61  RNKMEE---DLEIYSDKHPQHCTFYNGGXNANEEDLNSVSEEEV 101

The following BLAST results are available for this feature:
BLAST of Bhi11G001342 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi11G001342 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi11G001342 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi11G001342 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152195.19.5e-0849.04zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charanti... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M001342Bhi11M001342mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi11G001342Lsi03G013390Bottle gourd (USVL1VR-Ls)lsiwgoB292
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi11G001342Wax gourdwgowgoB001
Bhi11G001342Cucumber (Gy14) v1cgywgoB385
Bhi11G001342Cucumber (Gy14) v1cgywgoB676
Bhi11G001342Cucumber (Gy14) v2cgybwgoB226
Bhi11G001342Cucumber (Gy14) v2cgybwgoB407
Bhi11G001342Cucurbita maxima (Rimu)cmawgoB0289
Bhi11G001342Cucurbita maxima (Rimu)cmawgoB0299
Bhi11G001342Cucurbita maxima (Rimu)cmawgoB0816
Bhi11G001342Cucurbita moschata (Rifu)cmowgoB0089
Bhi11G001342Cucurbita moschata (Rifu)cmowgoB0288
Bhi11G001342Cucurbita moschata (Rifu)cmowgoB0812
Bhi11G001342Cucurbita pepo (Zucchini)cpewgoB0479
Bhi11G001342Cucurbita pepo (Zucchini)cpewgoB0826
Bhi11G001342Cucurbita pepo (Zucchini)cpewgoB0751
Bhi11G001342Wild cucumber (PI 183967)cpiwgoB238
Bhi11G001342Wild cucumber (PI 183967)cpiwgoB433
Bhi11G001342Cucumber (Chinese Long) v3cucwgoB241
Bhi11G001342Cucumber (Chinese Long) v3cucwgoB442
Bhi11G001342Cucumber (Chinese Long) v2cuwgoB236
Bhi11G001342Cucumber (Chinese Long) v2cuwgoB431
Bhi11G001342Bottle gourd (USVL1VR-Ls)lsiwgoB205
Bhi11G001342Melon (DHL92) v3.6.1medwgoB375
Bhi11G001342Melon (DHL92) v3.5.1mewgoB002
Bhi11G001342Melon (DHL92) v3.5.1mewgoB374
Bhi11G001342Watermelon (Charleston Gray)wcgwgoB012
Bhi11G001342Watermelon (Charleston Gray)wcgwgoB078
Bhi11G001342Watermelon (97103) v2wgowmbB001
Bhi11G001342Watermelon (97103) v2wgowmbB052
Bhi11G001342Watermelon (97103) v1wgowmB005
Bhi11G001342Watermelon (97103) v1wgowmB007
Bhi11G001342Silver-seed gourdcarwgoB0338
Bhi11G001342Silver-seed gourdcarwgoB0450
Bhi11G001342Silver-seed gourdcarwgoB0520
Bhi11G001342Silver-seed gourdcarwgoB0800