Bhi11G001078 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G001078
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pectinesterase
Location	chr11 : 37440011 .. 37440170 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAGGTGATGATTCCTCCAGAAAAATCATGCATATTTCTAGATGGTAGTGGCCGTAAAACAACTGAAATTCAATGGAATGACTATATAACTACAGCTACTAGTCCCACCTTCACTTCTTTTGCAGAAAACCTCGTGGTACAAGGCATTACATTTAGG

mRNA sequence

GGAAAAGGTGATGATTCCTCCAGAAAAATCATGCATATTTCTAGATGGTAGTGGCCGTAAAACAACTGAAATTCAATGGAATGACTATATAACTACAGCTACTAGTCCCACCTTCACTTCTTTTGCAGAAAACCTCGTGGTACAAGGCATTACATTTAGG

Coding sequence (CDS)

GGAAAAGGTGATGATTCCTCCAGAAAAATCATGCATATTTCTAGATGGTAGTGGCCGTAAAACAACTGAAATTCAATGGAATGACTATATAACTACAGCTACTAGTCCCACCTTCACTTCTTTTGCAGAAAACCTCGTGGTACAAGGCATTACATTTAGG

Protein sequence

EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR

Homology

[Close]

BLAST of Bhi11G001078 vs. TAIR10
Match: AT3G24130.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-09
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITF 53
           EK+ IP EK  I L G+G++ T ++W+D+ + A SPTF++ A+N VV+ ITF
Sbjct: 73  EKIKIPYEKPFIVLVGAGKRLTRVEWDDHYSVAQSPTFSTLADNTVVKSITF 124

[Close]

BLAST of Bhi11G001078 vs. TAIR10
Match: AT2G47280.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-09
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP EK  I+L G G + T I+++D+  T  S TFT+FA+++V+ GITF+
Sbjct: 74  EKVTIPKEKGFIYLQGKGIEQTVIEYDDHQATDISATFTAFADDIVISGITFK 126

[Close]

BLAST of Bhi11G001078 vs. TAIR10
Match: AT5G18990.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 9.1e-09
Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITF 53
           EK+ IP +K  I + G+G+++T ++W+D+ + A SPTF + A+N VV+ ITF
Sbjct: 68  EKITIPQKKPFIVIVGAGKRSTRVEWDDHASLAQSPTFATLADNTVVKKITF 119

[Close]

BLAST of Bhi11G001078 vs. TAIR10
Match: AT2G19150.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.7e-07
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  K  I++ G G + T I + D+  T TS TFTS+  N+++ GITF+
Sbjct: 80  EKVTIPRGKGYIYMQGGGIEKTIIAYGDHQLTNTSATFTSYPSNIIITGITFK 132

[Close]

BLAST of Bhi11G001078 vs. TAIR10
Match: AT2G21610.1 (pectinesterase 11)

HSP 1 Score: 39.7 bits (91), Expect = 6.8e-04
Identity = 21/53 (39.62%), Postives = 29/53 (54.72%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV+IP EK  I L G+    T + W+D      SPT T FA + V + +T +
Sbjct: 92  EKVVIPAEKPYITLSGTQASNTFLIWSDGEDILESPTLTIFASDFVCRFLTIQ 144

[Close]

BLAST of Bhi11G001078 vs. Swiss-Prot
Match: sp|Q4PSN0|PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana OX=3702 GN=PME29 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-08
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITF 53
           EK+ IP EK  I L G+G++ T ++W+D+ + A SPTF++ A+N VV+ ITF
Sbjct: 73  EKIKIPYEKPFIVLVGAGKRLTRVEWDDHYSVAQSPTFSTLADNTVVKSITF 124

[Close]

BLAST of Bhi11G001078 vs. Swiss-Prot
Match: sp|Q4PSQ5|PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana OX=3702 GN=PME66 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-08
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP EK  I+L G G + T I+++D+  T  S TFT+FA+++V+ GITF+
Sbjct: 74  EKVTIPKEKGFIYLQGKGIEQTVIEYDDHQATDISATFTAFADDIVISGITFK 126

[Close]

BLAST of Bhi11G001078 vs. Swiss-Prot
Match: sp|Q3E9D3|PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana OX=3702 GN=PME55 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-07
Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITF 53
           EK+ IP +K  I + G+G+++T ++W+D+ + A SPTF + A+N VV+ ITF
Sbjct: 68  EKITIPQKKPFIVIVGAGKRSTRVEWDDHASLAQSPTFATLADNTVVKKITF 119

[Close]

BLAST of Bhi11G001078 vs. Swiss-Prot
Match: sp|O64479|PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana OX=3702 GN=PME10 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-06
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  K  I++ G G + T I + D+  T TS TFTS+  N+++ GITF+
Sbjct: 80  EKVTIPRGKGYIYMQGGGIEKTIIAYGDHQLTNTSATFTSYPSNIIITGITFK 132

[Close]

BLAST of Bhi11G001078 vs. TrEMBL
Match: tr|A0A0A0LB12|A0A0A0LB12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536660 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP EKSCIFLDGSG + TEI WND+ TTA SPTFT+ A+NLVVQGITFR
Sbjct: 85  EKVTIPSEKSCIFLDGSGLQVTEIHWNDHETTAASPTFTASAQNLVVQGITFR 137

[Close]

BLAST of Bhi11G001078 vs. TrEMBL
Match: tr|A0A2C9WNC1|A0A2C9WNC1_MANES (Pectinesterase OS=Manihot esculenta OX=3983 GN=MANES_01G229600 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-10
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  KSCIFLDG+GRK T I+W D+  T TS TFTS+++N+V +GI F+
Sbjct: 75  EKVAIPVNKSCIFLDGAGRKLTSIEWGDHEETDTSATFTSYSDNIVAKGIKFK 127

[Close]

BLAST of Bhi11G001078 vs. TrEMBL
Match: tr|V4VWS4|V4VWS4_9ROSI (Pectinesterase (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10024124mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  K CIFL+G+  +TT+IQW D+ TT +SPTFTS +EN+V +GI F+
Sbjct: 56  EKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQ 108

[Close]

BLAST of Bhi11G001078 vs. TrEMBL
Match: tr|A0A2H5NXL5|A0A2H5NXL5_CITUN (Pectinesterase OS=Citrus unshiu OX=55188 GN=CUMW_085170 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  K CIFL+G+  +TT+IQW D+ TT +SPTFTS +EN+V +GI F+
Sbjct: 81  EKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQ 133

[Close]

BLAST of Bhi11G001078 vs. TrEMBL
Match: tr|A0A067HG98|A0A067HG98_CITSI (Pectinesterase OS=Citrus sinensis OX=2711 GN=CISIN_1g043974mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  K CIFL+G+  +TT+IQW D+ TT +SPTFTS +EN+V +GI F+
Sbjct: 79  EKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQ 131

[Close]

BLAST of Bhi11G001078 vs. NCBI nr
Match: KGN58134.1 (hypothetical protein Csa_3G536660 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP EKSCIFLDGSG + TEI WND+ TTA SPTFT+ A+NLVVQGITFR
Sbjct: 85  EKVTIPSEKSCIFLDGSGLQVTEIHWNDHETTAASPTFTASAQNLVVQGITFR 137

[Close]

BLAST of Bhi11G001078 vs. NCBI nr
Match: XP_011652807.1 (PREDICTED: probable pectinesterase 55 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
          EKV IP EKSCIFLDGSG + TEI WND+ TTA SPTFT+ A+NLVVQGITFR
Sbjct: 33 EKVTIPSEKSCIFLDGSGLQVTEIHWNDHETTAASPTFTASAQNLVVQGITFR 85

[Close]

BLAST of Bhi11G001078 vs. NCBI nr
Match: XP_022157021.1 (uncharacterized protein LOC111023848 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  KSCIF+DG+G + TEIQWND+ TTATS TFTSFAENLVV+GI FR
Sbjct: 82  EKVTIPKGKSCIFIDGAGSRVTEIQWNDHQTTATSATFTSFAENLVVRGIAFR 134

[Close]

BLAST of Bhi11G001078 vs. NCBI nr
Match: XP_023524602.1 (LOW QUALITY PROTEIN: probable pectinesterase 55 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV I  EKSCIFL+G+GR +TEI+WND+ TTATS TFTS AENLVV+GITF+
Sbjct: 77  EKVHISEEKSCIFLEGAGRSSTEIRWNDHATTATSATFTSIAENLVVKGITFK 129

[Close]

BLAST of Bhi11G001078 vs. NCBI nr
Match: OAY61946.1 (hypothetical protein MANES_01G229600 [Manihot esculenta])

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-10
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   EKVMIPPEKSCIFLDGSGRKTTEIQWNDYITTATSPTFTSFAENLVVQGITFR 54
           EKV IP  KSCIFLDG+GRK T I+W D+  T TS TFTS+++N+V +GI F+
Sbjct: 75  EKVAIPVNKSCIFLDGAGRKLTSIEWGDHEETDTSATFTSYSDNIVAKGIKFK 127

The following BLAST results are available for this feature:

BLAST of Bhi11G001078 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24130.1	1.8e-09	48.08	Pectin lyase-like superfamily protein	[more]
AT2G47280.1	4.1e-09	49.06	Pectin lyase-like superfamily protein	[more]
AT5G18990.1	9.1e-09	44.23	Pectin lyase-like superfamily protein	[more]
AT2G19150.1	1.7e-07	45.28	Pectin lyase-like superfamily protein	[more]
AT2G21610.1	6.8e-04	39.62	pectinesterase 11	[more]

BLAST of Bhi11G001078 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4PSN0\|PME29_ARATH	3.3e-08	48.08	Probable pectinesterase 29 OS=Arabidopsis thaliana OX=3702 GN=PME29 PE=2 SV=1	[more]
sp\|Q4PSQ5\|PME66_ARATH	7.4e-08	49.06	Probable pectinesterase 66 OS=Arabidopsis thaliana OX=3702 GN=PME66 PE=2 SV=2	[more]
sp\|Q3E9D3\|PME55_ARATH	1.6e-07	44.23	Probable pectinesterase 55 OS=Arabidopsis thaliana OX=3702 GN=PME55 PE=2 SV=1	[more]
sp\|O64479\|PME10_ARATH	3.1e-06	45.28	Putative pectinesterase 10 OS=Arabidopsis thaliana OX=3702 GN=PME10 PE=2 SV=1	[more]

BLAST of Bhi11G001078 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LB12\|A0A0A0LB12_CUCSA	1.8e-14	77.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536660 PE=4 SV=1	[more]
tr\|A0A2C9WNC1\|A0A2C9WNC1_MANES	3.4e-10	60.38	Pectinesterase OS=Manihot esculenta OX=3983 GN=MANES_01G229600 PE=4 SV=1	[more]
tr\|V4VWS4\|V4VWS4_9ROSI	1.0e-09	58.49	Pectinesterase (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10024124mg PE=...	[more]
tr\|A0A2H5NXL5\|A0A2H5NXL5_CITUN	1.0e-09	58.49	Pectinesterase OS=Citrus unshiu OX=55188 GN=CUMW_085170 PE=4 SV=1	[more]
tr\|A0A067HG98\|A0A067HG98_CITSI	1.0e-09	58.49	Pectinesterase OS=Citrus sinensis OX=2711 GN=CISIN_1g043974mg PE=4 SV=1	[more]

BLAST of Bhi11G001078 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58134.1	2.7e-14	77.36	hypothetical protein Csa_3G536660 [Cucumis sativus]	[more]
XP_011652807.1	2.7e-14	77.36	PREDICTED: probable pectinesterase 55 [Cucumis sativus]	[more]
XP_022157021.1	5.9e-14	75.47	uncharacterized protein LOC111023848 [Momordica charantia]	[more]
XP_023524602.1	2.3e-13	73.58	LOW QUALITY PROTEIN: probable pectinesterase 55 [Cucurbita pepo subsp. pepo]	[more]
OAY61946.1	5.2e-10	60.38	hypothetical protein MANES_01G229600 [Manihot esculenta]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0045490	pectin catabolic process
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0030599	pectinesterase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001078	Bhi11M001078	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 1..53 e-value: 2.7E-6 score: 28.8
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 1..53

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G001078	Cucumber (Chinese Long) v2	cuwgoB247
Bhi11G001078	Wax gourd	wgowgoB019
Bhi11G001078	Cucumber (Gy14) v1	cgywgoB429
Bhi11G001078	Cucumber (Gy14) v1	cgywgoB600
Bhi11G001078	Cucumber (Gy14) v2	cgybwgoB236
Bhi11G001078	Cucumber (Gy14) v2	cgybwgoB618
Bhi11G001078	Cucurbita maxima (Rimu)	cmawgoB0289
Bhi11G001078	Cucurbita maxima (Rimu)	cmawgoB0453
Bhi11G001078	Cucurbita maxima (Rimu)	cmawgoB0454
Bhi11G001078	Cucurbita maxima (Rimu)	cmawgoB0553
Bhi11G001078	Cucurbita maxima (Rimu)	cmawgoB1087
Bhi11G001078	Cucurbita maxima (Rimu)	cmawgoB1089
Bhi11G001078	Cucurbita moschata (Rifu)	cmowgoB0279
Bhi11G001078	Cucurbita moschata (Rifu)	cmowgoB0451
Bhi11G001078	Cucurbita moschata (Rifu)	cmowgoB0452
Bhi11G001078	Cucurbita moschata (Rifu)	cmowgoB0551
Bhi11G001078	Cucurbita moschata (Rifu)	cmowgoB1081
Bhi11G001078	Cucurbita moschata (Rifu)	cmowgoB1083
Bhi11G001078	Cucurbita pepo (Zucchini)	cpewgoB0170
Bhi11G001078	Cucurbita pepo (Zucchini)	cpewgoB0171
Bhi11G001078	Cucurbita pepo (Zucchini)	cpewgoB0376
Bhi11G001078	Cucurbita pepo (Zucchini)	cpewgoB0668
Bhi11G001078	Cucurbita pepo (Zucchini)	cpewgoB0742
Bhi11G001078	Wild cucumber (PI 183967)	cpiwgoB248
Bhi11G001078	Wild cucumber (PI 183967)	cpiwgoB658
Bhi11G001078	Cucumber (Chinese Long) v3	cucwgoB251
Bhi11G001078	Cucumber (Chinese Long) v3	cucwgoB672
Bhi11G001078	Cucumber (Chinese Long) v2	cuwgoB650
Bhi11G001078	Bottle gourd (USVL1VR-Ls)	lsiwgoB202
Bhi11G001078	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G001078	Melon (DHL92) v3.6.1	medwgoB199
Bhi11G001078	Melon (DHL92) v3.6.1	medwgoB387
Bhi11G001078	Melon (DHL92) v3.5.1	mewgoB197
Bhi11G001078	Melon (DHL92) v3.5.1	mewgoB385
Bhi11G001078	Watermelon (Charleston Gray)	wcgwgoB011
Bhi11G001078	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G001078	Watermelon (Charleston Gray)	wcgwgoB490
Bhi11G001078	Watermelon (97103) v2	wgowmbB001
Bhi11G001078	Watermelon (97103) v2	wgowmbB042
Bhi11G001078	Watermelon (97103) v2	wgowmbB050
Bhi11G001078	Watermelon (97103) v1	wgowmB003
Bhi11G001078	Watermelon (97103) v1	wgowmB007
Bhi11G001078	Watermelon (97103) v1	wgowmB055
Bhi11G001078	Silver-seed gourd	carwgoB0079
Bhi11G001078	Silver-seed gourd	carwgoB0126
Bhi11G001078	Silver-seed gourd	carwgoB0543
Bhi11G001078	Silver-seed gourd	carwgoB0894
Bhi11G001078	Silver-seed gourd	carwgoB0951