Bhi11G000926 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000926
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	30S ribosomal protein S12, chloroplastic-like
Location	chr11 : 32801669 .. 32801950 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCAGCGTTCTATTTGAGCCAGGATCGAACTCTCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTTTCATTCCAAGGCATAACTGGTATCCATGCGCCTTCAATATTCACAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCATATTGGGTTTAGGGATAATCAGGCTCAAACTGATGAGTTCCGCCATGTCAAGGCGACACTCTACCGCTGA

mRNA sequence

ATGCCGCCAGCGTTCTATTTGAGCCAGGATCGAACTCTCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTTTCATTCCAAGGCATAACTGGTATCCATGCGCCTTCAATATTCACAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCATATTGGGTTTAGGGATAATCAGGCTCAAACTGATGAGTTCCGCCATGTCAAGGCGACACTCTACCGCTGA

Coding sequence (CDS)

ATGCCGCCAGCGTTCTATTTGAGCCAGGATCGAACTCTCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTTTCATTCCAAGGCATAACTGGTATCCATGCGCCTTCAATATTCACAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCATATTGGGTTTAGGGATAATCAGGCTCAAACTGATGAGTTCCGCCATGTCAAGGCGACACTCTACCGCTGA

Protein sequence

MPPAFYLSQDRTLMRFIVALLIASLFVDKANSELSFSFQGITGIHAPSIFTASYPFSFDHGGGASQNRKTHIGFRDNQAQTDEFRHVKATLYR

Homology

[Close]

BLAST of Bhi11G000926 vs. TrEMBL
Match: tr|U5D449|U5D449_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00030p00239160 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 55/89 (61.80%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 14 MRFIVALLIASLFVDKANSELSF---------SFQGITGIHAPSIFTASYPFSFDHGGGA 73
          MRFIVALLIAS FVDKA+SELSF         + Q        S+  ASY FSFDHGGGA
Sbjct: 1  MRFIVALLIASFFVDKADSELSFIPRHNLCSCTQQYSHSYPLKSLPQASYAFSFDHGGGA 60

Query: 74 SQNRKTHIGFRDNQAQTDEFRHVKATLYR 94
          SQN+K  IGFRDN A+T EF HVK TL R
Sbjct: 61 SQNKKACIGFRDNHARTYEFHHVKVTLDR 89

[Close]

BLAST of Bhi11G000926 vs. TrEMBL
Match: tr|A0A2G2VND6|A0A2G2VND6_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 54/97 (55.67%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 14  MRFIVALLIASLFVDKANSELSF-----------------SFQGITGIHAPSIFTASYPF 73
           MRFIVALLIASLFVDKA+SELSF                 S +        SI  ASYPF
Sbjct: 234 MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPRASYPF 293

Query: 74  SFDHGGGASQNRKTHIGFRDNQAQTDEFRHVKATLYR 94
           S +  GGA+  RKTHIG RDNQA+TD+F HVK  LYR
Sbjct: 294 SLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330

[Close]

BLAST of Bhi11G000926 vs. TrEMBL
Match: tr|A0A2G3DGB3|A0A2G3DGB3_CAPCH (Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 14  MRFIVALLIASLFVDKANSELSF--------SFQGITGIHA---------PSIFTASYPF 73
           MRFIVALLIASLFVDKANSELSF              G+H+          SI  ASYPF
Sbjct: 82  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVHSQKYSHPCPLTSIPRASYPF 141

Query: 74  SFDHGGGASQNRKTHIGFRDNQAQTDEFRHVK 89
           S + GGGA+  RKT IG RDNQA+TD+F HVK
Sbjct: 142 SLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of Bhi11G000926 vs. TrEMBL
Match: tr|A0A1R3KZ67|A0A1R3KZ67_9ROSI (ORF46h OS=Corchorus olitorius OX=93759 GN=COLO4_03250 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 55 PFSFDHGGGASQNRKTHIGFRDNQAQTDEFRHVKATLYR 94
          P   DHGGGA QNRKTHIGFRDNQA+TD+F HVK TLYR
Sbjct: 26 PLIHDHGGGARQNRKTHIGFRDNQARTDDFHHVKVTLYR 64

[Close]

BLAST of Bhi11G000926 vs. TrEMBL
Match: tr|A0A0A0K6M9|A0A0A0K6M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G329345 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 47/80 (58.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 14 MRFIVALLIASLFVDKANSELSF----------------SFQGITGIH-APSIFTASYPF 73
          MRFIVALLIA LFVDKAN +LSF                  Q     H   SI  ASYPF
Sbjct: 1  MRFIVALLIAFLFVDKANLKLSFIPRHNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPF 60

Query: 74 SFDHGGGASQNRKTHIGFRD 77
          SFDH  GASQNRKTHIGFRD
Sbjct: 61 SFDHCEGASQNRKTHIGFRD 80

[Close]

BLAST of Bhi11G000926 vs. NCBI nr
Match: ERN16192.1 (hypothetical protein AMTR_s00030p00239160 [Amborella trichopoda])

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 55/89 (61.80%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 14 MRFIVALLIASLFVDKANSELSF---------SFQGITGIHAPSIFTASYPFSFDHGGGA 73
          MRFIVALLIAS FVDKA+SELSF         + Q        S+  ASY FSFDHGGGA
Sbjct: 1  MRFIVALLIASFFVDKADSELSFIPRHNLCSCTQQYSHSYPLKSLPQASYAFSFDHGGGA 60

Query: 74 SQNRKTHIGFRDNQAQTDEFRHVKATLYR 94
          SQN+K  IGFRDN A+T EF HVK TL R
Sbjct: 61 SQNKKACIGFRDNHARTYEFHHVKVTLDR 89

[Close]

BLAST of Bhi11G000926 vs. NCBI nr
Match: PHT34490.1 (hypothetical protein CQW23_26290 [Capsicum baccatum])

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 54/97 (55.67%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 14  MRFIVALLIASLFVDKANSELSF-----------------SFQGITGIHAPSIFTASYPF 73
           MRFIVALLIASLFVDKA+SELSF                 S +        SI  ASYPF
Sbjct: 234 MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPRASYPF 293

Query: 74  SFDHGGGASQNRKTHIGFRDNQAQTDEFRHVKATLYR 94
           S +  GGA+  RKTHIG RDNQA+TD+F HVK  LYR
Sbjct: 294 SLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330

[Close]

BLAST of Bhi11G000926 vs. NCBI nr
Match: PHU30032.1 (Photosystem II protein D1 [Capsicum chinense])

HSP 1 Score: 85.9 bits (211), Expect = 8.0e-14
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 14  MRFIVALLIASLFVDKANSELSF--------SFQGITGIHA---------PSIFTASYPF 73
           MRFIVALLIASLFVDKANSELSF              G+H+          SI  ASYPF
Sbjct: 82  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVHSQKYSHPCPLTSIPRASYPF 141

Query: 74  SFDHGGGASQNRKTHIGFRDNQAQTDEFRHVK 89
           S + GGGA+  RKT IG RDNQA+TD+F HVK
Sbjct: 142 SLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of Bhi11G000926 vs. NCBI nr
Match: KGN44549.1 (hypothetical protein Csa_7G329345 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 47/80 (58.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 14 MRFIVALLIASLFVDKANSELSF----------------SFQGITGIH-APSIFTASYPF 73
          MRFIVALLIA LFVDKAN +LSF                  Q     H   SI  ASYPF
Sbjct: 1  MRFIVALLIAFLFVDKANLKLSFIPRHNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPF 60

Query: 74 SFDHGGGASQNRKTHIGFRD 77
          SFDH  GASQNRKTHIGFRD
Sbjct: 61 SFDHCEGASQNRKTHIGFRD 80

[Close]

BLAST of Bhi11G000926 vs. NCBI nr
Match: OMP12403.1 (ORF46h [Corchorus olitorius])

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 55 PFSFDHGGGASQNRKTHIGFRDNQAQTDEFRHVKATLYR 94
          P   DHGGGA QNRKTHIGFRDNQA+TD+F HVK TLYR
Sbjct: 26 PLIHDHGGGARQNRKTHIGFRDNQARTDDFHHVKVTLYR 64

The following BLAST results are available for this feature:

BLAST of Bhi11G000926 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G000926 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G000926 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|U5D449\|U5D449_AMBTC	1.3e-15	61.80	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00030p00239160...	[more]
tr\|A0A2G2VND6\|A0A2G2VND6_CAPBA	1.8e-14	55.67	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=4 SV=1	[more]
tr\|A0A2G3DGB3\|A0A2G3DGB3_CAPCH	5.3e-14	57.61	Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=4 SV=1	[more]
tr\|A0A1R3KZ67\|A0A1R3KZ67_9ROSI	3.9e-09	79.49	ORF46h OS=Corchorus olitorius OX=93759 GN=COLO4_03250 PE=4 SV=1	[more]
tr\|A0A0A0K6M9\|A0A0A0K6M9_CUCSA	3.9e-09	58.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G329345 PE=4 SV=1	[more]

BLAST of Bhi11G000926 vs. NCBI nr


Match Name	E-value	Identity	Description
ERN16192.1	1.9e-15	61.80	hypothetical protein AMTR_s00030p00239160 [Amborella trichopoda]	[more]
PHT34490.1	2.7e-14	55.67	hypothetical protein CQW23_26290 [Capsicum baccatum]	[more]
PHU30032.1	8.0e-14	57.61	Photosystem II protein D1 [Capsicum chinense]	[more]
KGN44549.1	5.9e-09	58.75	hypothetical protein Csa_7G329345 [Cucumis sativus]	[more]
OMP12403.1	5.9e-09	79.49	ORF46h [Corchorus olitorius]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000926	Bhi11M000926	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000926	Wild cucumber (PI 183967)	cpiwgoB358
Bhi11G000926	Wild cucumber (PI 183967)	cpiwgoB659
Bhi11G000926	Cucumber (Chinese Long) v3	cucwgoB360
Bhi11G000926	Cucumber (Chinese Long) v3	cucwgoB674
Bhi11G000926	Cucumber (Chinese Long) v2	cuwgoB356
Bhi11G000926	Cucumber (Chinese Long) v2	cuwgoB651
Bhi11G000926	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G000926	Bottle gourd (USVL1VR-Ls)	lsiwgoB307
Bhi11G000926	Melon (DHL92) v3.6.1	medwgoB200
Bhi11G000926	Melon (DHL92) v3.6.1	medwgoB569
Bhi11G000926	Melon (DHL92) v3.5.1	mewgoB198
Bhi11G000926	Melon (DHL92) v3.5.1	mewgoB564
Bhi11G000926	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G000926	Watermelon (Charleston Gray)	wcgwgoB259
Bhi11G000926	Watermelon (97103) v2	wgowmbB001
Bhi11G000926	Watermelon (97103) v2	wgowmbB033
Bhi11G000926	Watermelon (97103) v1	wgowmB007
Bhi11G000926	Silver-seed gourd	carwgoB0381
Bhi11G000926	Silver-seed gourd	carwgoB0456
Bhi11G000926	Cucumber (Gy14) v1	cgywgoB443
Bhi11G000926	Cucumber (Gy14) v1	cgywgoB597
Bhi11G000926	Cucumber (Gy14) v2	cgybwgoB342
Bhi11G000926	Cucumber (Gy14) v2	cgybwgoB619
Bhi11G000926	Cucurbita maxima (Rimu)	cmawgoB0410
Bhi11G000926	Cucurbita maxima (Rimu)	cmawgoB0634
Bhi11G000926	Cucurbita maxima (Rimu)	cmawgoB0814
Bhi11G000926	Cucurbita moschata (Rifu)	cmowgoB0405
Bhi11G000926	Cucurbita moschata (Rifu)	cmowgoB0635
Bhi11G000926	Cucurbita moschata (Rifu)	cmowgoB0810
Bhi11G000926	Cucurbita pepo (Zucchini)	cpewgoB0266
Bhi11G000926	Cucurbita pepo (Zucchini)	cpewgoB0311
Bhi11G000926	Cucurbita pepo (Zucchini)	cpewgoB0477