Bhi11G000905 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000905
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	agamous-like MADS-box protein AGL62
Location	chr11 : 32314967 .. 32315224 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGCATCAATTAGAACAAATCCAAGCATCCTTGGATGAGTTAAAGAAGAATGTCACACAACAAGTTGATTGGATTTTGATTCAGACATCTAATGGCAATCAACGGACGCGGTTCTTCCCAACTCCAACTCCGACACCAACACCGATAAACTCTAACCAACAAGCTGGCCTTTTCGTCATCGATCCGAAGAACATCATCTCCCATCTTCCCTACAATAACTTTGGTTCCTATAGACCATGTAGTTTCTTTTGA

mRNA sequence

ATGGAAATGCATCAATTAGAACAAATCCAAGCATCCTTGGATGAGTTAAAGAAGAATGTCACACAACAAGTTGATTGGATTTTGATTCAGACATCTAATGGCAATCAACGGACGCGGTTCTTCCCAACTCCAACTCCGACACCAACACCGATAAACTCTAACCAACAAGCTGGCCTTTTCGTCATCGATCCGAAGAACATCATCTCCCATCTTCCCTACAATAACTTTGGTTCCTATAGACCATGTAGTTTCTTTTGA

Coding sequence (CDS)

ATGGAAATGCATCAATTAGAACAAATCCAAGCATCCTTGGATGAGTTAAAGAAGAATGTCACACAACAAGTTGATTGGATTTTGATTCAGACATCTAATGGCAATCAACGGACGCGGTTCTTCCCAACTCCAACTCCGACACCAACACCGATAAACTCTAACCAACAAGCTGGCCTTTTCGTCATCGATCCGAAGAACATCATCTCCCATCTTCCCTACAATAACTTTGGTTCCTATAGACCATGTAGTTTCTTTTGA

Protein sequence

MEMHQLEQIQASLDELKKNVTQQVDWILIQTSNGNQRTRFFPTPTPTPTPINSNQQAGLFVIDPKNIISHLPYNNFGSYRPCSFF

Homology

[Close]

BLAST of Bhi11G000905 vs. TrEMBL
Match: tr|A0A1S3BYP6|A0A1S3BYP6_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 52/88 (59.09%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQT-SNGNQRT--XXXXXXXXXXXXXXXXXQA 60
           MEMHQLEQ++ASLDELKKNVTQQ D ILIQT SN N  T                   Q 
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTPTTTNGPNQQP 199

Query: 61  GLFVIDPKNIISHLPYNNFGSYRPCSFF 86
           GLFV+DPKNIISHLP+ N+GSY    FF
Sbjct: 200 GLFVVDPKNIISHLPF-NYGSYGSRGFF 226

[Close]

BLAST of Bhi11G000905 vs. TrEMBL
Match: tr|A0A0A0KWA9|A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 52/90 (57.78%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQT-SNGNQRT----XXXXXXXXXXXXXXXXX 60
           MEMHQLEQ++ASLDELKKNVTQQ D ILIQT SN N  T                     
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTSTTTNGPNQ 199

Query: 61  QAGLFVIDPKNIISHLPYNNFGSYRPCSFF 86
           Q GLFV+DPKNIISHLP+ N+GSY    FF
Sbjct: 200 QPGLFVVDPKNIISHLPF-NYGSYGSRGFF 228

[Close]

BLAST of Bhi11G000905 vs. NCBI nr
Match: XP_008454428.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 52/88 (59.09%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQT-SNGNQRT--XXXXXXXXXXXXXXXXXQA 60
           MEMHQLEQ++ASLDELKKNVTQQ D ILIQT SN N  T                   Q 
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTPTTTNGPNQQP 199

Query: 61  GLFVIDPKNIISHLPYNNFGSYRPCSFF 86
           GLFV+DPKNIISHLP+ N+GSY    FF
Sbjct: 200 GLFVVDPKNIISHLPF-NYGSYGSRGFF 226

[Close]

BLAST of Bhi11G000905 vs. NCBI nr
Match: XP_004150272.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN52732.1 hypothetical protein Csa_4G000530 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 52/90 (57.78%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQT-SNGNQRT----XXXXXXXXXXXXXXXXX 60
           MEMHQLEQ++ASLDELKKNVTQQ D ILIQT SN N  T                     
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTSTTTNGPNQ 199

Query: 61  QAGLFVIDPKNIISHLPYNNFGSYRPCSFF 86
           Q GLFV+DPKNIISHLP+ N+GSY    FF
Sbjct: 200 QPGLFVVDPKNIISHLPF-NYGSYGSRGFF 228

[Close]

BLAST of Bhi11G000905 vs. NCBI nr
Match: XP_022942821.1 (agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 4.7e-13
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQTSNGNQRTXXXXXXXXXXXXXXXXXQAGLF 60
           ME+HQLEQ++ SLDELKKNVTQQ D ILIQTSNGN                    Q G++
Sbjct: 140 MELHQLEQLKLSLDELKKNVTQQADRILIQTSNGN----PPPQFFPTPTPANPNQQGGVY 199

Query: 61  VIDPKNIISHLPYNNFGSYRPCSFF 86
           V+D KN+ISHLPY N+GSY    FF
Sbjct: 200 VVDQKNMISHLPY-NYGSYGSRGFF 219

[Close]

BLAST of Bhi11G000905 vs. NCBI nr
Match: XP_022149295.1 (agamous-like MADS-box protein AGL62 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 8.1e-13
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQTSNGNQRTXXXXXXXXXXXXXXXXXQAGLF 60
           MEM+QLEQ++ SL+ELKKNVTQ  D IL+QTSNGN                    Q G+F
Sbjct: 140 MEMNQLEQLKTSLEELKKNVTQHADRILVQTSNGN----PPPQYFPTPSPANPNQQGGVF 199

Query: 61  VIDPKNIISHLPYNNFGSYRPCSFF 86
           V+DPKN+ISHLPY N+GSY    FF
Sbjct: 200 VVDPKNMISHLPY-NYGSYGSRGFF 219

[Close]

BLAST of Bhi11G000905 vs. NCBI nr
Match: XP_022975753.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1   MEMHQLEQIQASLDELKKNVTQQVDWILIQTSNGNQRTXXXXXXXXXXXXXXXXXQAGLF 60
           ME++QLEQ++ SLDELKKNV QQ D ILIQTSNGN                    Q G++
Sbjct: 140 MELYQLEQLKLSLDELKKNVMQQADRILIQTSNGN----PPPQFFPTPTPANPNQQGGVY 199

Query: 61  VIDPKNIISHLPYNNFGSYRPCSFF 86
           V+D KN+ISHLPY N+GSY    FF
Sbjct: 200 VVDQKNMISHLPY-NYGSYGSRGFF 219

The following BLAST results are available for this feature:

BLAST of Bhi11G000905 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G000905 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G000905 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYP6\|A0A1S3BYP6_CUCME	1.1e-13	59.09	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4...	[more]
tr\|A0A0A0KWA9\|A0A0A0KWA9_CUCSA	1.8e-13	57.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000530 PE=4 SV=1	[more]

BLAST of Bhi11G000905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454428.1	1.6e-13	59.09	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
XP_004150272.1	2.8e-13	57.78	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN52732.1 hyp...	[more]
XP_022942821.1	4.7e-13	55.29	agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous...	[more]
XP_022149295.1	8.1e-13	54.12	agamous-like MADS-box protein AGL62 [Momordica charantia]	[more]
XP_022975753.1	1.2e-11	52.94	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000905	Bhi11M000905	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000905	Cucumber (Gy14) v1	cgywgoB443
Bhi11G000905	Cucumber (Gy14) v1	cgywgoB597
Bhi11G000905	Cucumber (Gy14) v2	cgybwgoB342
Bhi11G000905	Cucumber (Gy14) v2	cgybwgoB619
Bhi11G000905	Cucurbita maxima (Rimu)	cmawgoB0410
Bhi11G000905	Cucurbita maxima (Rimu)	cmawgoB0634
Bhi11G000905	Cucurbita maxima (Rimu)	cmawgoB0814
Bhi11G000905	Cucurbita moschata (Rifu)	cmowgoB0405
Bhi11G000905	Cucurbita moschata (Rifu)	cmowgoB0635
Bhi11G000905	Cucurbita moschata (Rifu)	cmowgoB0810
Bhi11G000905	Cucurbita pepo (Zucchini)	cpewgoB0266
Bhi11G000905	Cucurbita pepo (Zucchini)	cpewgoB0311
Bhi11G000905	Cucurbita pepo (Zucchini)	cpewgoB0477
Bhi11G000905	Wild cucumber (PI 183967)	cpiwgoB358
Bhi11G000905	Wild cucumber (PI 183967)	cpiwgoB659
Bhi11G000905	Cucumber (Chinese Long) v3	cucwgoB674
Bhi11G000905	Cucumber (Chinese Long) v2	cuwgoB356
Bhi11G000905	Cucumber (Chinese Long) v2	cuwgoB651
Bhi11G000905	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G000905	Bottle gourd (USVL1VR-Ls)	lsiwgoB307
Bhi11G000905	Melon (DHL92) v3.6.1	medwgoB200
Bhi11G000905	Melon (DHL92) v3.6.1	medwgoB569
Bhi11G000905	Melon (DHL92) v3.5.1	mewgoB198
Bhi11G000905	Melon (DHL92) v3.5.1	mewgoB564
Bhi11G000905	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G000905	Watermelon (Charleston Gray)	wcgwgoB259
Bhi11G000905	Watermelon (97103) v2	wgowmbB001
Bhi11G000905	Watermelon (97103) v2	wgowmbB033
Bhi11G000905	Watermelon (97103) v1	wgowmB007
Bhi11G000905	Silver-seed gourd	carwgoB0381
Bhi11G000905	Silver-seed gourd	carwgoB0456