Bhi11G000904 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000904
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	agamous-like MADS-box protein AGL62
Location	chr11 : 32314058 .. 32314252 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGAGCAAAGGGAGGCAAAAGGTAGAGATGGTAAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGTGTCGTCCAGCCTCTTCAAGAAAGCTAGCAAGCTCTGCACGCTTTGTGGTGCTGAGATTGCCATCATTGTCTTTTTGCCCGGGAAGAAGGTCTTCTCCTTTGGTCATGTGTTGA

mRNA sequence

ATGAGGAAGAGCAAAGGGAGGCAAAAGGTAGAGATGGTAAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGTGTCGTCCAGCCTCTTCAAGAAAGCTAGCAAGCTCTGCACGCTTTGTGGTGCTGAGATTGCCATCATTGTCTTTTTGCCCGGGAAGAAGGTCTTCTCCTTTGGTCATGTGTTGA

Coding sequence (CDS)

ATGAGGAAGAGCAAAGGGAGGCAAAAGGTAGAGATGGTAAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGTGTCGTCCAGCCTCTTCAAGAAAGCTAGCAAGCTCTGCACGCTTTGTGGTGCTGAGATTGCCATCATTGTCTTTTTGCCCGGGAAGAAGGTCTTCTCCTTTGGTCATGTGTTGA

Protein sequence

MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRRSSPLVMC

Homology

[Close]

BLAST of Bhi11G000904 vs. TAIR10
Match: AT5G60440.1 (AGAMOUS-like 62)

HSP 1 Score: 53.5 bits (127), Expect = 5.5e-08
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          ++KSKGRQK+EMVKM NESNLQVTFSK R    +K +         +  + F PGR+
Sbjct: 2  VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRK 58

[Close]

BLAST of Bhi11G000904 vs. TAIR10
Match: AT4G36590.1 (MADS-box transcription factor family protein)

HSP 1 Score: 44.7 bits (104), Expect = 2.5e-05
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPG 56
          +R +KGRQK+EM KM NESNLQVTFSK R    +K +         +  + F PG
Sbjct: 2  VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPG 56

[Close]

BLAST of Bhi11G000904 vs. TAIR10
Match: AT1G01530.1 (AGAMOUS-like 28)

HSP 1 Score: 42.7 bits (99), Expect = 9.7e-05
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 2  RKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRRS 59
          RK+ GR+K+E+VKM NESNLQVTFSK R    +K +         +  + F P  ++
Sbjct: 3  RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKA 59

[Close]

BLAST of Bhi11G000904 vs. TAIR10
Match: AT1G65360.1 (AGAMOUS-like 23)

HSP 1 Score: 40.0 bits (92), Expect = 6.3e-04
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCP 55
          ++K+ GR+KVE+VKM  ESNLQVTFSK +    +K +        ++  + F P
Sbjct: 2  VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSP 55

[Close]

BLAST of Bhi11G000904 vs. Swiss-Prot
Match: sp|Q9FKK2|AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.9e-07
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          ++KSKGRQK+EMVKM NESNLQVTFSK R    +K +         +  + F PGR+
Sbjct: 2  VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRK 58

[Close]

BLAST of Bhi11G000904 vs. TrEMBL
Match: tr|A0A1S3BYP6|A0A1S3BYP6_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.1e-06
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKS+GRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 57

[Close]

BLAST of Bhi11G000904 vs. TrEMBL
Match: tr|A0A0A0KWA9|A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.1e-06
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKS+GRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 57

[Close]

BLAST of Bhi11G000904 vs. TrEMBL
Match: tr|A0A2P4KBP3|A0A2P4KBP3_QUESU (Agamous-like mads-box protein agl62 OS=Quercus suber OX=58331 GN=CFP56_59940 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-05
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKSKGRQK+EMVKMPN+SNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSKGRQKIEMVKMPNDSNLQVTFSKRRSGLFKKASELCTLCGAEIGIIVFSPGKK 57

[Close]

BLAST of Bhi11G000904 vs. TrEMBL
Match: tr|V4SG26|V4SG26_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030142mg PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-05
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 2  RKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          +KSKGRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 4  KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKK 59

[Close]

BLAST of Bhi11G000904 vs. TrEMBL
Match: tr|A0A2H5P9P2|A0A2H5P9P2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_114480 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-05
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 2  RKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          +KSKGRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 7  KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKK 62

[Close]

BLAST of Bhi11G000904 vs. NCBI nr
Match: XP_004150272.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN52732.1 hypothetical protein Csa_4G000530 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKS+GRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 57

[Close]

BLAST of Bhi11G000904 vs. NCBI nr
Match: XP_008454428.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKS+GRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 57

[Close]

BLAST of Bhi11G000904 vs. NCBI nr
Match: XP_021691446.1 (agamous-like MADS-box protein AGL62 [Hevea brasiliensis])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          +RKSKGRQKVEMVKMPNESNLQVTFSK R    +K +       + +  + F PG++
Sbjct: 2  VRKSKGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPGKK 58

[Close]

BLAST of Bhi11G000904 vs. NCBI nr
Match: XP_022149295.1 (agamous-like MADS-box protein AGL62 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKS+GRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 57

[Close]

BLAST of Bhi11G000904 vs. NCBI nr
Match: XP_022942821.1 (agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MRKSKGRQKVEMVKMPNESNLQVTFSKCRPASSRKLASSARFVVLRLPSLSFCPGRR 58
          MRKS+GRQKVEMVKMPNESNLQVTFSK R    +K +         +  + F PG++
Sbjct: 1  MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 57

The following BLAST results are available for this feature:

BLAST of Bhi11G000904 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	5.5e-08	50.88	AGAMOUS-like 62	[more]
AT4G36590.1	2.5e-05	47.27	MADS-box transcription factor family protein	[more]
AT1G01530.1	9.7e-05	42.11	AGAMOUS-like 28	[more]
AT1G65360.1	6.3e-04	40.74	AGAMOUS-like 23	[more]

BLAST of Bhi11G000904 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FKK2\|AGL62_ARATH	9.9e-07	50.88	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]

BLAST of Bhi11G000904 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYP6\|A0A1S3BYP6_CUCME	8.1e-06	54.39	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4...	[more]
tr\|A0A0A0KWA9\|A0A0A0KWA9_CUCSA	8.1e-06	54.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000530 PE=4 SV=1	[more]
tr\|A0A2P4KBP3\|A0A2P4KBP3_QUESU	1.4e-05	52.63	Agamous-like mads-box protein agl62 OS=Quercus suber OX=58331 GN=CFP56_59940 PE=...	[more]
tr\|V4SG26\|V4SG26_9ROSI	5.3e-05	53.57	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030142mg PE=4 ...	[more]
tr\|A0A2H5P9P2\|A0A2H5P9P2_CITUN	5.3e-05	53.57	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_114480 PE=4 SV=1	[more]

BLAST of Bhi11G000904 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150272.1	1.2e-05	54.39	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN52732.1 hyp...	[more]
XP_008454428.1	1.2e-05	54.39	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
XP_021691446.1	1.2e-05	54.39	agamous-like MADS-box protein AGL62 [Hevea brasiliensis]	[more]
XP_022149295.1	1.2e-05	54.39	agamous-like MADS-box protein AGL62 [Momordica charantia]	[more]
XP_022942821.1	1.2e-05	54.39	agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000904	Bhi11M000904	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 5..35 score: 8.844

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000904	Cucumber (Gy14) v1	cgywgoB443
Bhi11G000904	Cucumber (Gy14) v1	cgywgoB597
Bhi11G000904	Cucumber (Gy14) v2	cgybwgoB342
Bhi11G000904	Cucumber (Gy14) v2	cgybwgoB619
Bhi11G000904	Cucurbita maxima (Rimu)	cmawgoB0410
Bhi11G000904	Cucurbita maxima (Rimu)	cmawgoB0634
Bhi11G000904	Cucurbita maxima (Rimu)	cmawgoB0814
Bhi11G000904	Cucurbita moschata (Rifu)	cmowgoB0405
Bhi11G000904	Cucurbita moschata (Rifu)	cmowgoB0635
Bhi11G000904	Cucurbita moschata (Rifu)	cmowgoB0810
Bhi11G000904	Cucurbita pepo (Zucchini)	cpewgoB0266
Bhi11G000904	Cucurbita pepo (Zucchini)	cpewgoB0311
Bhi11G000904	Cucurbita pepo (Zucchini)	cpewgoB0477
Bhi11G000904	Wild cucumber (PI 183967)	cpiwgoB358
Bhi11G000904	Wild cucumber (PI 183967)	cpiwgoB659
Bhi11G000904	Cucumber (Chinese Long) v3	cucwgoB674
Bhi11G000904	Cucumber (Chinese Long) v2	cuwgoB356
Bhi11G000904	Cucumber (Chinese Long) v2	cuwgoB651
Bhi11G000904	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G000904	Bottle gourd (USVL1VR-Ls)	lsiwgoB307
Bhi11G000904	Melon (DHL92) v3.6.1	medwgoB200
Bhi11G000904	Melon (DHL92) v3.6.1	medwgoB569
Bhi11G000904	Melon (DHL92) v3.5.1	mewgoB198
Bhi11G000904	Melon (DHL92) v3.5.1	mewgoB564
Bhi11G000904	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G000904	Watermelon (Charleston Gray)	wcgwgoB259
Bhi11G000904	Watermelon (97103) v2	wgowmbB001
Bhi11G000904	Watermelon (97103) v2	wgowmbB033
Bhi11G000904	Watermelon (97103) v1	wgowmB007
Bhi11G000904	Silver-seed gourd	carwgoB0381
Bhi11G000904	Silver-seed gourd	carwgoB0456