Bhi11G000858 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000858
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	beta-(1,2)-xylosyltransferase
Location	chr11 : 30835471 .. 30835710 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGCTGAAATTTCGTAGCAGTGCTTTTGAACTTGACGACGGCGAGGAGAGGGTTCTTGTCGATGAGAAGTTTCTTGATCGGTTCGTGCCGGAAGGGGAAGTTCAGAGGCACACTATGCGCGCATTGTTTGGATTGTTTCAAGTTGTTTCTAGGAGTAATTTTGAATGCAAAGAGGTAGAATACAAGTTTTTATGGGTTTTTGGAGCTTTTTGTTCTTCCATTTATGCATTTTGA

mRNA sequence

ATGGAGTTGCTGAAATTTCGTAGCAGTGCTTTTGAACTTGACGACGGCGAGGAGAGGGTTCTTGTCGATGAGAAGTTTCTTGATCGGTTCGTGCCGGAAGGGGAAGTTCAGAGGCACACTATGCGCGCATTGTTTGGATTGTTTCAAGTTGTTTCTAGGAGTAATTTTGAATGCAAAGAGGTAGAATACAAGTTTTTATGGGTTTTTGGAGCTTTTTGTTCTTCCATTTATGCATTTTGA

Coding sequence (CDS)

ATGGAGTTGCTGAAATTTCGTAGCAGTGCTTTTGAACTTGACGACGGCGAGGAGAGGGTTCTTGTCGATGAGAAGTTTCTTGATCGGTTCGTGCCGGAAGGGGAAGTTCAGAGGCACACTATGCGCGCATTGTTTGGATTGTTTCAAGTTGTTTCTAGGAGTAATTTTGAATGCAAAGAGGTAGAATACAAGTTTTTATGGGTTTTTGGAGCTTTTTGTTCTTCCATTTATGCATTTTGA

Protein sequence

MELLKFRSSAFELDDGEERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFECKEVEYKFLWVFGAFCSSIYAF

Homology

[Close]

BLAST of Bhi11G000858 vs. TrEMBL
Match: tr|A0A1S3CI41|A0A1S3CI41_CUCME (beta-(1,2)-xylosyltransferase OS=Cucumis melo OX=3656 GN=LOC103501220 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-18
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MELLKFRSSAFELDDGEERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFECKE 60
           MEL +FR+ AFELD GEERVL DEKFLDRFV EGEVQRHTMRALFG F+VVS S+FEC+E
Sbjct: 152 MELPEFRNGAFELDGGEERVLADEKFLDRFVQEGEVQRHTMRALFGSFRVVSESDFECQE 211

[Close]

BLAST of Bhi11G000858 vs. TrEMBL
Match: tr|A0A0A0LGK1|A0A0A0LGK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G764550 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MELLKFRSSAFELDDGEERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFECKE 60
           MEL +FRS AFELD GEERVL DEKFLDRFV EGEVQRHTMRALFG F+VVS S+F C+E
Sbjct: 152 MELPEFRSGAFELDGGEERVLADEKFLDRFVQEGEVQRHTMRALFGSFRVVSESDFGCQE 211

[Close]

BLAST of Bhi11G000858 vs. TrEMBL
Match: tr|A0A2I4DZJ3|A0A2I4DZJ3_9ROSI (beta-(1,2)-xylosyltransferase OS=Juglans regia OX=51240 GN=LOC108984915 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2   ELLKFRSSAFELD-----DGEERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNF 61
           EL KF++ AFE+D     +G  R LVD++FLDR+VP+GE+  HTMRAL G  +VV+ S F
Sbjct: 165 ELPKFQNGAFEVDGGVGFEGPPRRLVDDEFLDRYVPQGEILIHTMRALIGSVRVVAASEF 224

[Close]

BLAST of Bhi11G000858 vs. TrEMBL
Match: tr|A0A1S3VLC8|A0A1S3VLC8_VIGRR (beta-(1,2)-xylosyltransferase OS=Vigna radiata var. radiata OX=3916 GN=LOC106776281 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 2   ELLKFRSSAFELDDG---EERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFEC 61
           EL  F+  AFE+D G   + + LVD +FLDRFVP GEV RHTMR L G  ++V   +FEC
Sbjct: 156 ELPAFQEGAFEVDGGGFVDRKFLVDREFLDRFVPRGEVTRHTMRDLIGKIRIVGGKDFEC 215

[Close]

BLAST of Bhi11G000858 vs. TrEMBL
Match: tr|A0A0L9VBG9|A0A0L9VBG9_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g063800 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 2   ELLKFRSSAFELDDG---EERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFEC 61
           EL  F+  AFE+D G   + + LVD +FLDRFVP GEV RHTMR L G  ++V   +FEC
Sbjct: 156 ELPAFQEGAFEVDGGGFVDRKFLVDREFLDRFVPRGEVTRHTMRDLIGKIRIVGGKDFEC 215

[Close]

BLAST of Bhi11G000858 vs. NCBI nr
Match: XP_008462957.1 (PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MELLKFRSSAFELDDGEERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFECKE 60
           MEL +FR+ AFELD GEERVL DEKFLDRFV EGEVQRHTMRALFG F+VVS S+FEC+E
Sbjct: 152 MELPEFRNGAFELDGGEERVLADEKFLDRFVQEGEVQRHTMRALFGSFRVVSESDFECQE 211

[Close]

BLAST of Bhi11G000858 vs. NCBI nr
Match: XP_004150255.2 (PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis sativus] >KGN59086.1 hypothetical protein Csa_3G764550 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MELLKFRSSAFELDDGEERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNFECKE 60
           MEL +FRS AFELD GEERVL DEKFLDRFV EGEVQRHTMRALFG F+VVS S+F C+E
Sbjct: 152 MELPEFRSGAFELDGGEERVLADEKFLDRFVQEGEVQRHTMRALFGSFRVVSESDFGCQE 211

[Close]

BLAST of Bhi11G000858 vs. NCBI nr
Match: XP_022977172.1 (beta-(1,2)-xylosyltransferase [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 2   ELLKFRSSAFELDDGE-----ERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNF 61
           EL KFR  AFELD G+     ERVL DEKFL+ FVP GE+Q HTMRALFG F+VVS ++F
Sbjct: 154 ELPKFRDGAFELDGGDTVVGKERVLADEKFLNGFVPAGEIQSHTMRALFGSFRVVSGNDF 213

[Close]

BLAST of Bhi11G000858 vs. NCBI nr
Match: XP_022935928.1 (beta-(1,2)-xylosyltransferase [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 2   ELLKFRSSAFELDDGE-----ERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNF 61
           EL KFR+ AFELD G+     ERVL DEKFL+ FVP GE+Q HTMRALFG F+VVS ++F
Sbjct: 154 ELPKFRNGAFELDGGDTVASKERVLADEKFLNGFVPAGEIQSHTMRALFGSFRVVSGNDF 213

[Close]

BLAST of Bhi11G000858 vs. NCBI nr
Match: XP_023536582.1 (beta-(1,2)-xylosyltransferase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536584.1 beta-(1,2)-xylosyltransferase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 2   ELLKFRSSAFELDDGE-----ERVLVDEKFLDRFVPEGEVQRHTMRALFGLFQVVSRSNF 61
           EL KFR  AFELD G+     ERVL DEKFL+ FVP GE+Q HTMRALFG F+VVS ++F
Sbjct: 154 ELPKFRDGAFELDGGDTVAGKERVLADEKFLNGFVPAGEIQSHTMRALFGSFRVVSGNDF 213

The following BLAST results are available for this feature:

BLAST of Bhi11G000858 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G000858 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G000858 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI41\|A0A1S3CI41_CUCME	5.1e-18	80.00	beta-(1,2)-xylosyltransferase OS=Cucumis melo OX=3656 GN=LOC103501220 PE=4 SV=1	[more]
tr\|A0A0A0LGK1\|A0A0A0LGK1_CUCSA	1.5e-17	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G764550 PE=4 SV=1	[more]
tr\|A0A2I4DZJ3\|A0A2I4DZJ3_9ROSI	2.5e-09	54.69	beta-(1,2)-xylosyltransferase OS=Juglans regia OX=51240 GN=LOC108984915 PE=4 SV=...	[more]
tr\|A0A1S3VLC8\|A0A1S3VLC8_VIGRR	2.8e-08	53.23	beta-(1,2)-xylosyltransferase OS=Vigna radiata var. radiata OX=3916 GN=LOC106776...	[more]
tr\|A0A0L9VBG9\|A0A0L9VBG9_PHAAN	2.8e-08	53.23	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g063800 PE...	[more]

BLAST of Bhi11G000858 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462957.1	7.7e-18	80.00	PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis melo]	[more]
XP_004150255.2	2.2e-17	80.00	PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis sativus] >KGN59086.1 hypotheti...	[more]
XP_022977172.1	7.5e-13	65.63	beta-(1,2)-xylosyltransferase [Cucurbita maxima]	[more]
XP_022935928.1	1.3e-12	64.06	beta-(1,2)-xylosyltransferase [Cucurbita moschata]	[more]
XP_023536582.1	1.7e-12	64.06	beta-(1,2)-xylosyltransferase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005797	Golgi medial cisterna
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050513	glycoprotein 2-beta-D-xylosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000858	Bhi11M000858	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000858	Cucumber (Gy14) v1	cgywgoB792
Bhi11G000858	Cucumber (Gy14) v2	cgybwgoB344
Bhi11G000858	Cucurbita maxima (Rimu)	cmawgoB0410
Bhi11G000858	Cucurbita maxima (Rimu)	cmawgoB0634
Bhi11G000858	Cucurbita maxima (Rimu)	cmawgoB0814
Bhi11G000858	Cucurbita moschata (Rifu)	cmowgoB0405
Bhi11G000858	Cucurbita moschata (Rifu)	cmowgoB0635
Bhi11G000858	Cucurbita moschata (Rifu)	cmowgoB0810
Bhi11G000858	Cucurbita pepo (Zucchini)	cpewgoB0266
Bhi11G000858	Cucurbita pepo (Zucchini)	cpewgoB0311
Bhi11G000858	Cucurbita pepo (Zucchini)	cpewgoB0477
Bhi11G000858	Wild cucumber (PI 183967)	cpiwgoB360
Bhi11G000858	Cucumber (Chinese Long) v3	cucwgoB362
Bhi11G000858	Cucumber (Chinese Long) v2	cuwgoB358
Bhi11G000858	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G000858	Watermelon (Charleston Gray)	wcgwgoB010
Bhi11G000858	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G000858	Watermelon (97103) v2	wgowmbB001
Bhi11G000858	Watermelon (97103) v1	wgowmB007
Bhi11G000858	Silver-seed gourd	carwgoB0375
Bhi11G000858	Silver-seed gourd	carwgoB0381
Bhi11G000858	Silver-seed gourd	carwgoB0456