Bhi11G000616 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000616
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	syntaxin-32-like
Location	chr11 : 19675817 .. 19676030 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGAAATGAAAATTATGTTGCTTGTAAATTTACAGGAAGCAAGTGGATGGGGATGGTCAACCGTTGTTGCAGCAGCAACAACAACAGAAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTTGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGA

mRNA sequence

ATGTGGAAGCAAGTGGATGGGGATGGTCAACCGTTGTTGCAGCAGCAACAACAACAGAAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGA

Coding sequence (CDS)

ATGTGGAAGCAAGTGGATGGGGATGGTCAACCGTTGTTGCAGCAGCAACAACAACAGAAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGA

Protein sequence

MWKQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQNQYLQPAGNSGF

Homology

[Close]

BLAST of Bhi11G000616 vs. TrEMBL
Match: tr|A0A2I4GPB3|A0A2I4GPB3_9ROSI (syntaxin-32-like OS=Juglans regia OX=51240 GN=LOC109009619 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-05
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQ+DG+ QPL+Q  XXX Q+VPLQDTYMQSRAEALQN
Sbjct: 222 KQMDGESQPLVQHQXXXXQLVPLQDTYMQSRAEALQN 258

[Close]

BLAST of Bhi11G000616 vs. TrEMBL
Match: tr|A0A072V1R0|A0A072V1R0_MEDTR (Syntaxin of plants protein OS=Medicago truncatula OX=3880 GN=11431980 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-04
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQ    +Q+VPLQD+YMQSRAEALQN
Sbjct: 222 KQVDGESQPLLQQ--QQQQVVPLQDSYMQSRAEALQN 256

[Close]

BLAST of Bhi11G000616 vs. TrEMBL
Match: tr|G7JBR8|G7JBR8_MEDTR (Syntaxin of plants protein OS=Medicago truncatula OX=3880 GN=11431980 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-04
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQ    +Q+VPLQD+YMQSRAEALQN
Sbjct: 222 KQVDGESQPLLQQ--QQQQVVPLQDSYMQSRAEALQN 256

[Close]

BLAST of Bhi11G000616 vs. TrEMBL
Match: tr|A0A1S3U899|A0A1S3U899_VIGRR (syntaxin-32-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106762689 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-04
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQ    +++ PLQD+YMQSRAEALQN
Sbjct: 218 KQVDGEGQPLLQQ--QQQEVAPLQDSYMQSRAEALQN 252

[Close]

BLAST of Bhi11G000616 vs. TrEMBL
Match: tr|A0A1S3BCP1|A0A1S3BCP1_CUCME (syntaxin-32 OS=Cucumis melo OX=3656 GN=LOC103488253 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.7e-04
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPL   XXXX   VPLQDTYMQSRAEALQN
Sbjct: 222 KQVDGEGQPLXXXXXXXXXXVPLQDTYMQSRAEALQN 258

[Close]

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_018845736.1 (PREDICTED: syntaxin-32-like [Juglans regia] >XP_018845737.1 PREDICTED: syntaxin-32-like [Juglans regia])

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQ+DG+ QPL+Q  XXX Q+VPLQDTYMQSRAEALQN
Sbjct: 222 KQMDGESQPLVQHQXXXXQLVPLQDTYMQSRAEALQN 258

[Close]

BLAST of Bhi11G000616 vs. NCBI nr
Match: KEH35944.1 (syntaxin of plants protein [Medicago truncatula])

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQ    +Q+VPLQD+YMQSRAEALQN
Sbjct: 222 KQVDGESQPLLQQ--QQQQVVPLQDSYMQSRAEALQN 256

[Close]

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_003603483.1 (syntaxin-32 [Medicago truncatula] >AES73734.1 syntaxin of plants protein [Medicago truncatula])

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQ    +Q+VPLQD+YMQSRAEALQN
Sbjct: 222 KQVDGESQPLLQQ--QQQQVVPLQDSYMQSRAEALQN 256

[Close]

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_022636546.1 (syntaxin-32 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQ    +++ PLQD+YMQSRAEALQN
Sbjct: 218 KQVDGEGQPLLQQ--QQQEVAPLQDSYMQSRAEALQN 252

[Close]

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_022636544.1 (syntaxin-32 isoform X1 [Vigna radiata var. radiata] >XP_022636545.1 syntaxin-32 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 3   KQVDGDGQPLLQQXXXXKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQ    +++ PLQD+YMQSRAEALQN
Sbjct: 218 KQVDGEGQPLLQQ--QQQEVAPLQDSYMQSRAEALQN 252

The following BLAST results are available for this feature:

BLAST of Bhi11G000616 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G000616 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G000616 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4GPB3\|A0A2I4GPB3_9ROSI	7.0e-05	78.38	syntaxin-32-like OS=Juglans regia OX=51240 GN=LOC109009619 PE=4 SV=1	[more]
tr\|A0A072V1R0\|A0A072V1R0_MEDTR	1.6e-04	75.68	Syntaxin of plants protein OS=Medicago truncatula OX=3880 GN=11431980 PE=4 SV=1	[more]
tr\|G7JBR8\|G7JBR8_MEDTR	1.6e-04	75.68	Syntaxin of plants protein OS=Medicago truncatula OX=3880 GN=11431980 PE=3 SV=1	[more]
tr\|A0A1S3U899\|A0A1S3U899_VIGRR	2.0e-04	72.97	syntaxin-32-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106762689 PE=3 SV=1	[more]
tr\|A0A1S3BCP1\|A0A1S3BCP1_CUCME	7.7e-04	81.08	syntaxin-32 OS=Cucumis melo OX=3656 GN=LOC103488253 PE=3 SV=1	[more]

BLAST of Bhi11G000616 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018845736.1	1.1e-04	78.38	PREDICTED: syntaxin-32-like [Juglans regia] >XP_018845737.1 PREDICTED: syntaxin-...	[more]
KEH35944.1	2.4e-04	75.68	syntaxin of plants protein [Medicago truncatula]	[more]
XP_003603483.1	2.4e-04	75.68	syntaxin-32 [Medicago truncatula] >AES73734.1 syntaxin of plants protein [Medica...	[more]
XP_022636546.1	3.1e-04	72.97	syntaxin-32 isoform X2 [Vigna radiata var. radiata]	[more]
XP_022636544.1	3.1e-04	72.97	syntaxin-32 isoform X1 [Vigna radiata var. radiata] >XP_022636545.1 syntaxin-32 ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000616	Bhi11M000616	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR19957:SF206	SUBFAMILY NOT NAMED	coord: 3..39
None	No IPR available	PANTHER	PTHR19957	SYNTAXIN	coord: 3..39

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000616	Cucumber (Gy14) v1	cgywgoB082
Bhi11G000616	Cucumber (Gy14) v2	cgybwgoB234
Bhi11G000616	Cucurbita maxima (Rimu)	cmawgoB0414
Bhi11G000616	Cucurbita maxima (Rimu)	cmawgoB0817
Bhi11G000616	Cucurbita maxima (Rimu)	cmawgoB0826
Bhi11G000616	Cucurbita moschata (Rifu)	cmowgoB0410
Bhi11G000616	Cucurbita moschata (Rifu)	cmowgoB0421
Bhi11G000616	Cucurbita moschata (Rifu)	cmowgoB0814
Bhi11G000616	Cucurbita pepo (Zucchini)	cpewgoB0270
Bhi11G000616	Cucurbita pepo (Zucchini)	cpewgoB0283
Bhi11G000616	Cucurbita pepo (Zucchini)	cpewgoB0481
Bhi11G000616	Cucurbita pepo (Zucchini)	cpewgoB0489
Bhi11G000616	Wild cucumber (PI 183967)	cpiwgoB234
Bhi11G000616	Wild cucumber (PI 183967)	cpiwgoB236
Bhi11G000616	Wild cucumber (PI 183967)	cpiwgoB247
Bhi11G000616	Cucumber (Chinese Long) v3	cucwgoB249
Bhi11G000616	Cucumber (Chinese Long) v2	cuwgoB244
Bhi11G000616	Bottle gourd (USVL1VR-Ls)	lsiwgoB410
Bhi11G000616	Bottle gourd (USVL1VR-Ls)	lsiwgoB413
Bhi11G000616	Melon (DHL92) v3.6.1	medwgoB504
Bhi11G000616	Melon (DHL92) v3.6.1	medwgoB509
Bhi11G000616	Melon (DHL92) v3.5.1	mewgoB502
Bhi11G000616	Watermelon (Charleston Gray)	wcgwgoB080
Bhi11G000616	Watermelon (Charleston Gray)	wcgwgoB100
Bhi11G000616	Watermelon (97103) v2	wgowmbB003
Bhi11G000616	Watermelon (97103) v2	wgowmbB022
Bhi11G000616	Watermelon (97103) v1	wgowmB039
Bhi11G000616	Silver-seed gourd	carwgoB0775