Bhi11G000284 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000284
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Thaumatin-like protein
Location	chr11 : 8297106 .. 8297396 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCACTCCGGTGCGACTTTCACGATGCTCAACAACTGCTCCTTCCCCATCTGGCCCGCATCCAGATTTGGCTCTTGAACGTAACAGGGGACGAATTTGGAGCAGAACAAAATGCTCCAACGACGACTCTGGACAGGGAAATTGCAACACCGGCGACTGCGGCGGTGTTCTTTACTGCAAAACCTCCGGCTCACCGCCCATTAATCTAGCTCAACGATCGGGATTTCTTCGACATCTCTCTGGTCAATTGATTCAATATTGCGATGGAATTCAGACGTGGACGTAG

mRNA sequence

ATGAATTCCACTCCGGTGCGACTTTCACGATGCTCAACAACTGCTCCTTCCCCATCTGGCCCGCATCCAGATTTGGCTCTTGAACGTAACAGGGGACGAATTTGGAGCAGAACAAAATGCTCCAACGACGACTCTGGACAGGGAAATTGCAACACCGGCGACTGCGGCGGTGTTCTTTACTGCAAAACCTCCGGCTCACCGCCCATTAATCTAGCTCAACGATCGGGATTTCTTCGACATCTCTCTGGTCAATTGATTCAATATTGCGATGGAATTCAGACGTGGACGTAG

Coding sequence (CDS)

ATGAATTCCACTCCGGTGCGACTTTCACGATGCTCAACAACTGCTCCTTCCCCATCTGGCCCGCATCCAGATTTGGCTCTTGAACGTAACAGGGGACGAATTTGGAGCAGAACAAAATGCTCCAACGACGACTCTGGACAGGGAAATTGCAACACCGGCGACTGCGGCGGTGTTCTTTACTGCAAAACCTCCGGCTCACCGCCCATTAATCTAGCTCAACGATCGGGATTTCTTCGACATCTCTCTGGTCAATTGATTCAATATTGCGATGGAATTCAGACGTGGACGTAG

Protein sequence

MNSTPVRLSRCSTTAPSPSGPHPDLALERNRGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQRSGFLRHLSGQLIQYCDGIQTWT

Homology

[Close]

BLAST of Bhi11G000284 vs. TAIR10
Match: AT1G75050.1 (Pathogenesis-related thaumatin superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-11
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           GR W+RT C+ D SG GNC TGDCGGVL C   G PP+ LA+
Sbjct: 72  GRFWARTGCNFDASGHGNCGTGDCGGVLKCNGGGVPPVTLAE 113

[Close]

BLAST of Bhi11G000284 vs. TAIR10
Match: AT1G75030.1 (thaumatin-like protein 3)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-09
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           GR W+RT C+ D SG G C TGDCGGVL C   G PP  LA+
Sbjct: 71  GRFWARTGCNFDASGHGTCVTGDCGGVLKCTGGGVPPATLAE 112

[Close]

BLAST of Bhi11G000284 vs. TAIR10
Match: AT1G77700.1 (Pathogenesis-related thaumatin superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-09
Identity = 23/42 (54.76%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           GRIW RT C  D +G G C TG CG  L C  SG PP +LA+
Sbjct: 134 GRIWGRTGCKFDSTGTGTCETGSCGSTLKCSASGKPPASLAE 175

[Close]

BLAST of Bhi11G000284 vs. TAIR10
Match: AT1G75040.1 (pathogenesis-related gene 5)

HSP 1 Score: 53.5 bits (127), Expect = 8.2e-08
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           GR W+RT C+ D SG G C TGDCGG L C   G PP+ LA+
Sbjct: 71  GRFWARTGCNFDASGNGRCVTGDCGG-LRCNGGGVPPVTLAE 111

[Close]

BLAST of Bhi11G000284 vs. TAIR10
Match: AT1G18250.2 (Pathogenesis-related thaumatin superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.1e-07
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCK-TSGSPPINLAQ 74
           GR W R  C+ D SG+G+C TGDCGG L C    G PP  LA+
Sbjct: 70  GRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAE 112

[Close]

BLAST of Bhi11G000284 vs. Swiss-Prot
Match: sp|P02883|THM1_THADA (Thaumatin I OS=Thaumatococcus daniellii OX=4621 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 30  NRGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQRS 76
           N G+IW+RT C  DDSG G C TGDCGG+L CK  G PP  LA+ S
Sbjct: 68  NGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFS 113

[Close]

BLAST of Bhi11G000284 vs. Swiss-Prot
Match: sp|P02884|THM2_THADA (Thaumatin II OS=Thaumatococcus daniellii OX=4621 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-09
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQRS 76
           G+IW+RT C  DDSG+G C TGDCGG+L CK  G PP  LA+ S
Sbjct: 70  GKIWARTDCYFDDSGRGICRTGDCGGLLQCKRFGRPPTTLAEFS 113

[Close]

BLAST of Bhi11G000284 vs. Swiss-Prot
Match: sp|P25096|P21_SOYBN (Protein P21 OS=Glycine max OX=3847 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-09
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 33 RIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          R+W+RT C+ D SG+G C TGDCGGVL CK  G+PP  LA+
Sbjct: 44 RVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYGAPPNTLAE 84

[Close]

BLAST of Bhi11G000284 vs. Swiss-Prot
Match: sp|P07052|PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-08
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 31  RGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           + RIW RT C+ D SG+GNC TGDC G+L C+  G PP  LA+
Sbjct: 66  QARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKPPNTLAE 108

[Close]

BLAST of Bhi11G000284 vs. Swiss-Prot
Match: sp|G5DC91|TLP1_MANZA (Thaumatin-like protein 1 OS=Manilkara zapota OX=3741 GN=TLP1 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-08
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 31 RGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQRS 76
          + RIW RT C+ D +GQG C TGDC G+L C+  GSPP  LA+ S
Sbjct: 41 KARIWGRTGCNFDANGQGKCQTGDCNGLLQCQGYGSPPNTLAEFS 85

[Close]

BLAST of Bhi11G000284 vs. TrEMBL
Match: tr|H9VSM7|H9VSM7_PINTA (Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=CL298Contig1_01 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-09
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 24 DLALERNRGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          D+    + GR+W RT CS D SGQG CNTGDCGG+L C+ SG PP  LA+
Sbjct: 5  DVPTGTSAGRLWGRTSCSFDASGQGKCNTGDCGGLLNCQGSGQPPATLAE 54

[Close]

BLAST of Bhi11G000284 vs. TrEMBL
Match: tr|H9VSM8|H9VSM8_PINTA (Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=CL298Contig1_01 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 24 DLALERNRGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          D+    + GR W RT CS D SGQG CNTGDCGG+L C+ SG PP  LA+
Sbjct: 5  DVPTGTSAGRFWGRTSCSFDASGQGKCNTGDCGGLLNCQGSGQPPATLAE 54

[Close]

BLAST of Bhi11G000284 vs. TrEMBL
Match: tr|E0ZCZ0|E0ZCZ0_PICSI (Thaumatin-like protein (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 32 GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          GR W RT CS D SGQG+CNTGDCGG+L C+ SG PP  LA+
Sbjct: 38 GRFWGRTGCSFDSSGQGSCNTGDCGGLLSCQVSGRPPATLAE 79

[Close]

BLAST of Bhi11G000284 vs. TrEMBL
Match: tr|E0ZCY0|E0ZCY0_PICSI (Thaumatin-like protein (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 32 GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          GR W RT CS D SGQG+CNTGDCGG+L C+ SG PP  LA+
Sbjct: 38 GRFWGRTGCSFDASGQGSCNTGDCGGLLSCQVSGRPPATLAE 79

[Close]

BLAST of Bhi11G000284 vs. TrEMBL
Match: tr|E0ZCZ2|E0ZCZ2_PICSI (Thaumatin-like protein (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 32 GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          GR W RT CS D SGQG+CNTGDCGG+L C+ SG PP  LA+
Sbjct: 38 GRFWGRTGCSFDASGQGSCNTGDCGGLLSCQVSGRPPATLAE 79

[Close]

BLAST of Bhi11G000284 vs. NCBI nr
Match: XP_023005502.1 (protein P21-like [Cucurbita maxima] >XP_023005503.1 protein P21-like [Cucurbita maxima] >XP_023005504.1 protein P21-like [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQRS 76
           GRIW RT CS D SG+GNC TGDCGGVL C T GSPP  LA+ S
Sbjct: 105 GRIWGRTNCSFDKSGRGNCQTGDCGGVLQCVTFGSPPNTLAEFS 148

[Close]

BLAST of Bhi11G000284 vs. NCBI nr
Match: XP_022946881.1 (protein P21-like [Cucurbita moschata] >XP_022946889.1 protein P21-like [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           GRIW RT CS D SG+GNC TGDCGGVL C T GSPP  LA+
Sbjct: 121 GRIWGRTNCSFDKSGRGNCQTGDCGGVLQCVTFGSPPNTLAE 162

[Close]

BLAST of Bhi11G000284 vs. NCBI nr
Match: XP_023540802.1 (protein P21-like [Cucurbita pepo subsp. pepo] >XP_023540803.1 protein P21-like [Cucurbita pepo subsp. pepo] >XP_023540804.1 protein P21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 32  GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
           GRIW RT CS D SG+GNC TGDCGGVL C T GSPP  LA+
Sbjct: 121 GRIWGRTNCSFDKSGRGNCQTGDCGGVLQCVTLGSPPNTLAE 162

[Close]

BLAST of Bhi11G000284 vs. NCBI nr
Match: AFG52770.1 (hypothetical protein CL298Contig1_01, partial [Pinus taeda])

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 24 DLALERNRGRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          D+    + GR+W RT CS D SGQG CNTGDCGG+L C+ SG PP  LA+
Sbjct: 5  DVPTGTSAGRLWGRTSCSFDASGQGKCNTGDCGGLLNCQGSGQPPATLAE 54

[Close]

BLAST of Bhi11G000284 vs. NCBI nr
Match: ADM76215.1 (thaumatin-like protein, partial [Picea sitchensis] >ADM76216.1 thaumatin-like protein, partial [Picea sitchensis])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 32 GRIWSRTKCSNDDSGQGNCNTGDCGGVLYCKTSGSPPINLAQ 74
          GR W RT CS D SGQG+CNTGDCGG+L C+ SG PP  LA+
Sbjct: 38 GRFWGRTGCSFDSSGQGSCNTGDCGGLLSCQVSGRPPATLAE 79

The following BLAST results are available for this feature:

BLAST of Bhi11G000284 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75050.1	7.9e-11	61.90	Pathogenesis-related thaumatin superfamily protein	[more]
AT1G75030.1	3.3e-09	59.52	thaumatin-like protein 3	[more]
AT1G77700.1	7.4e-09	54.76	Pathogenesis-related thaumatin superfamily protein	[more]
AT1G75040.1	8.2e-08	57.14	pathogenesis-related gene 5	[more]
AT1G18250.2	4.1e-07	53.49	Pathogenesis-related thaumatin superfamily protein	[more]

BLAST of Bhi11G000284 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P02883\|THM1_THADA	1.1e-09	60.87	Thaumatin I OS=Thaumatococcus daniellii OX=4621 PE=1 SV=2	[more]
sp\|P02884\|THM2_THADA	1.9e-09	61.36	Thaumatin II OS=Thaumatococcus daniellii OX=4621 PE=1 SV=1	[more]
sp\|P25096\|P21_SOYBN	7.1e-09	60.98	Protein P21 OS=Glycine max OX=3847 PE=1 SV=1	[more]
sp\|P07052\|PRR2_TOBAC	3.5e-08	55.81	Pathogenesis-related protein R minor form OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
sp\|G5DC91\|TLP1_MANZA	4.6e-08	55.56	Thaumatin-like protein 1 OS=Manilkara zapota OX=3741 GN=TLP1 PE=1 SV=2	[more]

BLAST of Bhi11G000284 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|H9VSM7\|H9VSM7_PINTA	9.0e-09	58.00	Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=CL298Contig1_01 PE=...	[more]
tr\|H9VSM8\|H9VSM8_PINTA	1.5e-08	58.00	Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=CL298Contig1_01 PE=...	[more]
tr\|E0ZCZ0\|E0ZCZ0_PICSI	1.5e-08	66.67	Thaumatin-like protein (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=1	[more]
tr\|E0ZCY0\|E0ZCY0_PICSI	2.6e-08	66.67	Thaumatin-like protein (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=1	[more]
tr\|E0ZCZ2\|E0ZCZ2_PICSI	2.6e-08	66.67	Thaumatin-like protein (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=1	[more]

BLAST of Bhi11G000284 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005502.1	8.0e-09	70.45	protein P21-like [Cucurbita maxima] >XP_023005503.1 protein P21-like [Cucurbita ...	[more]
XP_022946881.1	1.0e-08	71.43	protein P21-like [Cucurbita moschata] >XP_022946889.1 protein P21-like [Cucurbit...	[more]
XP_023540802.1	1.0e-08	71.43	protein P21-like [Cucurbita pepo subsp. pepo] >XP_023540803.1 protein P21-like [...	[more]
AFG52770.1	1.4e-08	58.00	hypothetical protein CL298Contig1_01, partial [Pinus taeda]	[more]
ADM76215.1	2.3e-08	66.67	thaumatin-like protein, partial [Picea sitchensis] >ADM76216.1 thaumatin-like pr...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017949	Thaumatin_CS
IPR037176	Osmotin/thaumatin-like_sf
IPR001938	Thaumatin

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000284	Bhi11M000284	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001938	Thaumatin family	PRINTS	PR00347	THAUMATIN	coord: 46..75 score: 53.02 coord: 33..44 score: 54.95
IPR001938	Thaumatin family	PIRSF	PIRSF002703	PR5	coord: 12..76 e-value: 6.2E-14 score: 49.0
IPR001938	Thaumatin family	PFAM	PF00314	Thaumatin	coord: 29..73 e-value: 5.1E-12 score: 45.9
IPR001938	Thaumatin family	PANTHER	PTHR31048	FAMILY NOT NAMED	coord: 29..73
IPR001938	Thaumatin family	PROSITE	PS51367	THAUMATIN_2	coord: 32..73 score: 11.082
IPR037176	Osmotin/thaumatin-like superfamily	GENE3D	G3DSA:2.60.110.10		coord: 9..90 e-value: 9.1E-15 score: 57.0
IPR037176	Osmotin/thaumatin-like superfamily	SUPERFAMILY	SSF49870	Osmotin, thaumatin-like protein	coord: 29..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR31048:SF47	OSMOTIN-LIKE PROTEIN OSM34	coord: 29..73
IPR017949	Thaumatin, conserved site	PROSITE	PS00316	THAUMATIN_1	coord: 46..61

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000284	Cucumber (Gy14) v1	cgywgoB647
Bhi11G000284	Cucumber (Gy14) v2	cgybwgoB209
Bhi11G000284	Cucurbita maxima (Rimu)	cmawgoB0988
Bhi11G000284	Cucurbita moschata (Rifu)	cmowgoB0985
Bhi11G000284	Cucurbita pepo (Zucchini)	cpewgoB1074
Bhi11G000284	Wild cucumber (PI 183967)	cpiwgoB218
Bhi11G000284	Cucumber (Chinese Long) v3	cucwgoB223
Bhi11G000284	Cucumber (Chinese Long) v2	cuwgoB218
Bhi11G000284	Bottle gourd (USVL1VR-Ls)	lsiwgoB534
Bhi11G000284	Melon (DHL92) v3.6.1	medwgoB498
Bhi11G000284	Melon (DHL92) v3.5.1	mewgoB506
Bhi11G000284	Watermelon (Charleston Gray)	wcgwgoB000
Bhi11G000284	Watermelon (Charleston Gray)	wcgwgoB080
Bhi11G000284	Watermelon (97103) v2	wgowmbB003
Bhi11G000284	Watermelon (97103) v1	wgowmB032
Bhi11G000284	Silver-seed gourd	carwgoB1009