Bhi11G000170 (gene) Wax gourd

NameBhi11G000170
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11 : 4418653 .. 4418934 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTACCCACATGATAAGAAAGGGTGGAAGGTATATGATCTTGAGACTGGAGAAATATTTGTGTCTCACGATGTAAAGTTCCATGAAAATGAGTTTCCATATGCTGATGTTAATGTGAATATTGGTAATAATTTTCCTTCTATTGAAAATATGGTGGTTGATAATCATTTCTTGAATGATGTAGAAAGTGACTTTAAGGAAGAATTATCCAATAGTGTTGTTGGAAAAAAAGTTGTATGGCATACTAATGTCACTAATGATACAAAGGAGGTTGAAGAT

mRNA sequence

ATGGGTTACCCACATGATAAGAAAGGGTGGAAGGTATATGATCTTGAGACTGGAGAAATATTTGTGTCTCACGATGTAAAGTTCCATGAAAATGAGTTTCCATATGCTGATGTTAATGTGAATATTGGTAATAATTTTCCTTCTATTGAAAATATGGTGGTTGATAATCATTTCTTGAATGATGTAGAAAGTGACTTTAAGGAAGAATTATCCAATAGTGTTGTTGGAAAAAAAGTTGTATGGCATACTAATGTCACTAATGATACAAAGGAGGTTGAAGAT

Coding sequence (CDS)

ATGGGTTACCCACATGATAAGAAAGGGTGGAAGGTATATGATCTTGAGACTGGAGAAATATTTGTGTCTCACGATGTAAAGTTCCATGAAAATGAGTTTCCATATGCTGATGTTAATGTGAATATTGGTAATAATTTTCCTTCTATTGAAAATATGGTGGTTGATAATCATTTCTTGAATGATGTAGAAAGTGACTTTAAGGAAGAATTATCCAATAGTGTTGTTGGAAAAAAAGTTGTATGGCATACTAATGTCACTAATGATACAAAGGAGGTTGAAGAT

Protein sequence

MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYADVNVNIGNNFPSIENMVVDNHFLNDVESDFKEELSNSVVGKKVVWHTNVTNDTKEVED
BLAST of Bhi11G000170 vs. TrEMBL
Match: tr|Q8L700|Q8L700_ARATH (At2g23330 OS=Arabidopsis thaliana OX=3702 GN=At2g23330 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.7e-08
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 1  MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYADVNVNIGNNFPSIENMVVDNHFL 60
          +GYPH KK W+VYDLETG+IF S DV+FHE+ +PYA    +     P    MV D+ FL
Sbjct: 31 IGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDDWFL 89

BLAST of Bhi11G000170 vs. TrEMBL
Match: tr|O22175|O22175_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g23330 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.7e-08
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYADVNVNIGNNFPSIENMVVDNHFL 60
           +GYPH KK W+VYDLETG+IF S DV+FHE+ +PYA    +     P    MV D+ FL
Sbjct: 751 IGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDDWFL 809

BLAST of Bhi11G000170 vs. TrEMBL
Match: tr|A5B919|A5B919_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002640 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.7e-08
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYAD---VNVNIGNNFPSIENMVVDNH 60
           +GYP  KKGWK++DL+T E+FVS DVKF E+ FP+ +   VN+ + N  P++ N+ +D+ 
Sbjct: 763 LGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPFGNPGAVNIILDNIVPTV-NVEIDSD 822

Query: 61  FLNDVESD 66
           F + V+ D
Sbjct: 823 FADFVDDD 829

BLAST of Bhi11G000170 vs. TrEMBL
Match: tr|A0A2K3PAJ3|A0A2K3PAJ3_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g008936 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYADVNVNIGNNFPSIENMVVDNHFLN 60
           +GYPH KKGWK++DL+T   FVS DV F E+EFP+    V  G+   S    ++D   ++
Sbjct: 760 VGYPHGKKGWKLFDLDTNTYFVSRDVDFFEDEFPFGHSTVTSGSEAMS---HMLDEEAIS 819

Query: 61  DVESDFKEELSNSVVGK 78
           D E    EE++N  + K
Sbjct: 820 DTEIVESEEITNDELQK 833

BLAST of Bhi11G000170 vs. TrEMBL
Match: tr|A5B7X7|A5B7X7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017631 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYAD---VNVNIGNNFPSIENMVVDNH 60
           +GYP  KKGWK++DL+T E+FVS DVKF E+ FP+ +   VN+ I NN     N+ +D+ 
Sbjct: 475 LGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPFGNPGAVNI-IPNNIVPTVNVEIDSD 534

Query: 61  FLNDVESD 66
           F + V+ D
Sbjct: 535 FADFVDDD 541

BLAST of Bhi11G000170 vs. NCBI nr
Match: XP_021716606.1 (uncharacterized protein LOC110684457 [Chenopodium quinoa])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYA----DVNVNIGNNFPSIENMVVDN 60
           +GYPH KKGWK+YD ETGEIFVS DVKF+ENEFP+      ++ N+G    S +N+VVD+
Sbjct: 483 VGYPHGKKGWKLYDFETGEIFVSRDVKFYENEFPFVSTSDSLDANVGTEGVSHDNVVVDH 542

Query: 61  HFLNDVES 65
            FL+D+E+
Sbjct: 543 DFLDDLEN 550

BLAST of Bhi11G000170 vs. NCBI nr
Match: XP_010692440.1 (PREDICTED: uncharacterized protein LOC104905550 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.8 bits (203), Expect = 6.8e-13
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYADVNVNIGNNFPSI---ENMVVDNH 60
           +GYPH KKGWKVYD+ETGEIFVS DV FHENEFP+ +  V+  NN   I    N+ VD+ 
Sbjct: 510 LGYPHGKKGWKVYDIETGEIFVSRDVIFHENEFPFGENAVDGDNNMDDIFGDNNVGVDHD 569

Query: 61  FLNDVESDFKEE 70
           FL D+E   + E
Sbjct: 570 FLEDLEYTLEGE 581

BLAST of Bhi11G000170 vs. NCBI nr
Match: XP_021755434.1 (uncharacterized protein LOC110720688 [Chenopodium quinoa])

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-12
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYA----DVNVNIGNNFPSIENMVVDN 60
           +GYPH KKGWKVYDLETG+IFVS DVKF+ENEFPY       + N+     +  N+ VD+
Sbjct: 691 VGYPHGKKGWKVYDLETGDIFVSRDVKFYENEFPYVHKSDSTSANVSTEGMTNNNVGVDH 750

Query: 61  HFLNDVE 64
            FL+D+E
Sbjct: 751 DFLDDLE 757

BLAST of Bhi11G000170 vs. NCBI nr
Match: XP_021725291.1 (uncharacterized protein LOC110692563 [Chenopodium quinoa])

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYADVNVNIGNNFPSIENMVVDNHFLN 60
           +GYPH KKGWKVYDLE+G+IFVS DVKF ENEFP+AD +  +G +  S +N+ VD  FL+
Sbjct: 658 VGYPHGKKGWKVYDLESGDIFVSRDVKFFENEFPFAD-DSQVGTDTMSNDNVGVDIDFLD 717

Query: 61  DV 63
           D+
Sbjct: 718 DL 718

BLAST of Bhi11G000170 vs. NCBI nr
Match: XP_021732478.1 (uncharacterized protein LOC110699281 [Chenopodium quinoa])

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1   MGYPHDKKGWKVYDLETGEIFVSHDVKFHENEFPYA----DVNVNIGNNFPSIENMVVDN 60
           +GYPH KKGWK YDLETG+IFVS DVKFHENEFP+      V+  +G      + + VD+
Sbjct: 384 VGYPHGKKGWKFYDLETGDIFVSRDVKFHENEFPFVKDGDSVSSTVGVESVPNDYVGVDH 443

Query: 61  HFLNDVESDFK 68
           +FL+D+E  F+
Sbjct: 444 NFLDDLEYVFE 454

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|Q8L700|Q8L700_ARATH9.7e-0852.54At2g23330 OS=Arabidopsis thaliana OX=3702 GN=At2g23330 PE=2 SV=1[more]
tr|O22175|O22175_ARATH9.7e-0852.54Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g233... [more]
tr|A5B919|A5B919_VITVI9.7e-0845.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002640 PE=4 SV=1[more]
tr|A0A2K3PAJ3|A0A2K3PAJ3_TRIPR2.2e-0741.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens... [more]
tr|A5B7X7|A5B7X7_VITVI2.2e-0747.06Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017631 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_021716606.11.1e-1357.35uncharacterized protein LOC110684457 [Chenopodium quinoa][more]
XP_010692440.16.8e-1356.94PREDICTED: uncharacterized protein LOC104905550 [Beta vulgaris subsp. vulgaris][more]
XP_021755434.12.6e-1256.72uncharacterized protein LOC110720688 [Chenopodium quinoa][more]
XP_021725291.14.4e-1261.29uncharacterized protein LOC110692563 [Chenopodium quinoa][more]
XP_021732478.12.2e-1153.52uncharacterized protein LOC110699281 [Chenopodium quinoa][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000170Bhi11M000170mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None