Bhi10G001897 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001897
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Terpene synthase
Location	chr10 : 60555585 .. 60555748 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATTTTCTATGGACTACAGGAGTTGGATTTGAACCTGAGTTAACAAATTTTAGAAGAATGGTCACAAAAGTCAATGCATTGATCACAATAATAGATGATATTTATGATGTTTATGGCACATTGGATGAACTTGAGCTCTTTACCAATGCTATAGTGAG

mRNA sequence

ATGGCGAATTTTCTATGGACTACAGGAGTTGGATTTGAACCTGAGTTAACAAATTTTAGAAGAATGGTCACAAAAGTCAATGCATTGATCACAATAATAGATGATATTTATGATGTTTATGGCACATTGGATGAACTTGAGCTCTTTACCAATGCTATAGTGAG

Coding sequence (CDS)

ATGGCGAATTTTCTATGGACTACAGGAGTTGGATTTGAACCTGAGTTAACAAATTTTAGAAGAATGGTCACAAAAGTCAATGCATTGATCACAATAATAGATGATATTTATGATGTTTATGGCACATTGGATGAACTTGAGCTCTTTACCAATGCTATAGTGAG

Protein sequence

MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAIV

Homology

[Close]

BLAST of Bhi10G001897 vs. TAIR10
Match: AT3G25820.1 (terpene synthase-like sequence-1,8-cineole)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-13
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 3   NFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           N+ WT G+ +EP+    RR++T VNAL+T IDDIYD+YGTL+ELELFT+ +
Sbjct: 311 NYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIYGTLEELELFTSMV 361

[Close]

BLAST of Bhi10G001897 vs. TAIR10
Match: AT3G25830.1 (terpene synthase-like sequence-1,8-cineole)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-13
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 3   NFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           N+ WT G+ +EP+    RR++T VNAL+T IDDIYD+YGTL+ELELFT+ +
Sbjct: 311 NYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIYGTLEELELFTSMV 361

[Close]

BLAST of Bhi10G001897 vs. TAIR10
Match: AT4G16730.1 (terpene synthase 02)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-12
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 3   NFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           ++ WT G+ +EPE    R+++TK+  LI I+DDIYD+YGTL+ELELFTN +
Sbjct: 258 SYFWTIGIFYEPEFKYCRKILTKIFMLIVIMDDIYDIYGTLEELELFTNVV 308

[Close]

BLAST of Bhi10G001897 vs. TAIR10
Match: AT3G25810.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 3   NFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFT 51
           N+ WT G+ +EP+    RR+V  V ALIT+IDDIYD+YGT +ELELFT
Sbjct: 313 NYFWTVGMIYEPQFGYIRRIVAIVAALITVIDDIYDIYGTPEELELFT 360

[Close]

BLAST of Bhi10G001897 vs. TAIR10
Match: AT2G24210.1 (terpene synthase 10)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 3   NFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNA 53
           N+ WT G   EP+    R+ +TK+NAL+T IDDIYD+YGTL+EL+LFT A
Sbjct: 308 NYFWTIGQIQEPQYGYVRQTMTKINALLTTIDDIYDIYGTLEELQLFTVA 357

[Close]

BLAST of Bhi10G001897 vs. Swiss-Prot
Match: sp|B9T536|TPS10_RICCO (Terpene synthase 10 OS=Ricinus communis OX=3988 GN=TPS10 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-16
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NFLWT GV F P+   FRR+ TKVN+LIT+IDDIYDVYGTLDEL+LFTNA+
Sbjct: 270 MENFLWTVGVNFPPQFGYFRRISTKVNSLITVIDDIYDVYGTLDELQLFTNAV 322

[Close]

BLAST of Bhi10G001897 vs. Swiss-Prot
Match: sp|Q6PWU2|ATESY_VITVI ((-)-alpha-terpineol synthase OS=Vitis vinifera OX=29760 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-15
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NFLWT GV FEP+    RRM TKVN LITIIDD+YDVYGT+DELELFT+ +
Sbjct: 306 MENFLWTVGVIFEPQYGYCRRMSTKVNTLITIIDDVYDVYGTMDELELFTDVV 358

[Close]

BLAST of Bhi10G001897 vs. Swiss-Prot
Match: sp|A7IZZ2|TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa OX=3483 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-13
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 4   FLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           FLW  GV FEP+ ++FRR+  ++ ALITIIDDIYDVYGTL+ELELFT A+
Sbjct: 337 FLWQVGVRFEPQFSHFRRISARIYALITIIDDIYDVYGTLEELELFTKAV 386

[Close]

BLAST of Bhi10G001897 vs. Swiss-Prot
Match: sp|B3TPQ7|ATESY_MAGGA (Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora OX=3406 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-13
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M  FLWT GV FEP+    R ++TK+N LIT IDD+YDVYG+L+ELELFT A+
Sbjct: 309 MEGFLWTIGVKFEPQFAQCREVLTKINQLITTIDDVYDVYGSLEELELFTKAV 361

[Close]

BLAST of Bhi10G001897 vs. Swiss-Prot
Match: sp|Q8L5K3|RLC1_CITLI ((R)-limonene synthase 1, chloroplastic OS=Citrus limon OX=2708 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.6e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           +A+FLW+ G+ FEP+    RR++T   ALIT+IDDIYDVYGTLDELE+FT+A+
Sbjct: 309 VASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAV 361

[Close]

BLAST of Bhi10G001897 vs. TrEMBL
Match: tr|A0A1V0QSG1|A0A1V0QSG1_CANSA (Terpene synthase OS=Cannabis sativa OX=3483 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-17
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NFLWT GV FEP   +FRRM+TKVNALIT+IDDIYDVYGTLDELELFTNA+
Sbjct: 338 MVNFLWTVGVAFEPHFKSFRRMITKVNALITVIDDIYDVYGTLDELELFTNAV 390

[Close]

BLAST of Bhi10G001897 vs. TrEMBL
Match: tr|A0A1S4E328|A0A1S4E328_CUCME (myrcene synthase, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499663 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NF WT GVGFEPEL+ FRRM TKVNALIT IDD+YDVYG+LDELELFT+A+
Sbjct: 240 MENFFWTVGVGFEPELSYFRRMTTKVNALITTIDDVYDVYGSLDELELFTSAV 292

[Close]

BLAST of Bhi10G001897 vs. TrEMBL
Match: tr|A0A1S3CDJ7|A0A1S3CDJ7_CUCME (terpene synthase 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499663 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NF WT GVGFEPEL+ FRRM TKVNALIT IDD+YDVYG+LDELELFT+A+
Sbjct: 310 MENFFWTVGVGFEPELSYFRRMTTKVNALITTIDDVYDVYGSLDELELFTSAV 362

[Close]

BLAST of Bhi10G001897 vs. TrEMBL
Match: tr|A0A1S3CES4|A0A1S3CES4_CUCME (terpene synthase 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499666 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           MANFLWT G GFEPE +  RRM+TK+N+ ITI+DDIYDVYGTLDELELFT AI
Sbjct: 323 MANFLWTIGTGFEPEFSYCRRMITKINSFITILDDIYDVYGTLDELELFTKAI 375

[Close]

BLAST of Bhi10G001897 vs. TrEMBL
Match: tr|A0A1S3CD28|A0A1S3CD28_CUCME (terpene synthase 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499666 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           MANFLWT G GFEPE +  RRM+TK+N+ ITI+DDIYDVYGTLDELELFT AI
Sbjct: 322 MANFLWTIGTGFEPEFSYCRRMITKINSFITILDDIYDVYGTLDELELFTKAI 374

[Close]

BLAST of Bhi10G001897 vs. NCBI nr
Match: ARE72254.1 (terpene synthase [Cannabis sativa])

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-17
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NFLWT GV FEP   +FRRM+TKVNALIT+IDDIYDVYGTLDELELFTNA+
Sbjct: 338 MVNFLWTVGVAFEPHFKSFRRMITKVNALITVIDDIYDVYGTLDELELFTNAV 390

[Close]

BLAST of Bhi10G001897 vs. NCBI nr
Match: XP_022928103.1 (terpene synthase 10-like [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NF WT GVGFEPEL+ FRRM TKVNALIT IDDIYDVYGTLDELELFT+A+
Sbjct: 305 MENFFWTVGVGFEPELSYFRRMATKVNALITTIDDIYDVYGTLDELELFTDAV 357

[Close]

BLAST of Bhi10G001897 vs. NCBI nr
Match: XP_022971747.1 (terpene synthase 10-like [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NF WT GVGFEPEL+ FRRM TKVNALIT IDDIYDVYGTLDELELFT+A+
Sbjct: 304 MENFFWTVGVGFEPELSYFRRMATKVNALITTIDDIYDVYGTLDELELFTDAV 356

[Close]

BLAST of Bhi10G001897 vs. NCBI nr
Match: XP_008460926.1 (PREDICTED: terpene synthase 10-like isoform X1 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.9e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NF WT GVGFEPEL+ FRRM TKVNALIT IDD+YDVYG+LDELELFT+A+
Sbjct: 310 MENFFWTVGVGFEPELSYFRRMTTKVNALITTIDDVYDVYGSLDELELFTSAV 362

[Close]

BLAST of Bhi10G001897 vs. NCBI nr
Match: XP_016902632.1 (PREDICTED: myrcene synthase, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.9e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MANFLWTTGVGFEPELTNFRRMVTKVNALITIIDDIYDVYGTLDELELFTNAI 54
           M NF WT GVGFEPEL+ FRRM TKVNALIT IDD+YDVYG+LDELELFT+A+
Sbjct: 240 MENFFWTVGVGFEPELSYFRRMTTKVNALITTIDDVYDVYGSLDELELFTSAV 292

The following BLAST results are available for this feature:

BLAST of Bhi10G001897 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25820.1	2.8e-13	58.82	terpene synthase-like sequence-1,8-cineole	[more]
AT3G25830.1	2.8e-13	58.82	terpene synthase-like sequence-1,8-cineole	[more]
AT4G16730.1	1.8e-12	54.90	terpene synthase 02	[more]
AT3G25810.1	1.5e-11	60.42	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT2G24210.1	2.6e-11	58.00	terpene synthase 10	[more]

BLAST of Bhi10G001897 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B9T536\|TPS10_RICCO	1.2e-16	73.58	Terpene synthase 10 OS=Ricinus communis OX=3988 GN=TPS10 PE=2 SV=1	[more]
sp\|Q6PWU2\|ATESY_VITVI	2.9e-15	71.70	(-)-alpha-terpineol synthase OS=Vitis vinifera OX=29760 PE=1 SV=1	[more]
sp\|A7IZZ2\|TPS2_CANSA	1.2e-13	68.00	(+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa OX=3483 PE=1 SV=1	[more]
sp\|B3TPQ7\|ATESY_MAGGA	2.0e-13	62.26	Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora OX=3406 PE=1 SV=...	[more]
sp\|Q8L5K3\|RLC1_CITLI	4.6e-13	62.26	(R)-limonene synthase 1, chloroplastic OS=Citrus limon OX=2708 PE=2 SV=1	[more]

BLAST of Bhi10G001897 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1V0QSG1\|A0A1V0QSG1_CANSA	3.9e-17	81.13	Terpene synthase OS=Cannabis sativa OX=3483 PE=2 SV=1	[more]
tr\|A0A1S4E328\|A0A1S4E328_CUCME	3.3e-16	79.25	myrcene synthase, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CDJ7\|A0A1S3CDJ7_CUCME	3.3e-16	79.25	terpene synthase 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499663 PE=3...	[more]
tr\|A0A1S3CES4\|A0A1S3CES4_CUCME	1.2e-15	77.36	terpene synthase 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499666 PE=3...	[more]
tr\|A0A1S3CD28\|A0A1S3CD28_CUCME	1.2e-15	77.36	terpene synthase 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499666 PE=3...	[more]

BLAST of Bhi10G001897 vs. NCBI nr


Match Name	E-value	Identity	Description
ARE72254.1	5.8e-17	81.13	terpene synthase [Cannabis sativa]	[more]
XP_022928103.1	1.3e-16	83.02	terpene synthase 10-like [Cucurbita moschata]	[more]
XP_022971747.1	1.3e-16	83.02	terpene synthase 10-like [Cucurbita maxima]	[more]
XP_008460926.1	4.9e-16	79.25	PREDICTED: terpene synthase 10-like isoform X1 [Cucumis melo]	[more]
XP_016902632.1	4.9e-16	79.25	PREDICTED: myrcene synthase, chloroplastic-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0010333	terpene synthase activity
GO:0016829	lyase activity
GO:0000287	magnesium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019791	Haem_peroxidase_animal
IPR005630	Terpene_synthase_metal-bd
IPR008949	Isoprenoid_synthase_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006535	cysteine biosynthetic process from serine
cellular_component	GO:0005829	cytosol
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0009001	serine O-acetyltransferase activity
molecular_function	GO:0010333	terpene synthase activity
molecular_function	GO:0016829	lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001897	Bhi10M001897	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	G3DSA:1.10.600.10		coord: 1..54 e-value: 2.0E-21 score: 78.2
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	SSF48576	Terpenoid synthases	coord: 3..53
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 3..53 e-value: 1.3E-18 score: 67.2
None	No IPR available	PANTHER	PTHR31225:SF16	1,8-CINEOLE SYNTHASE 1, CHLOROPLASTIC-RELATED	coord: 1..53
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 1..53
IPR019791	Haem peroxidase, animal type	PROSITE	PS50292	PEROXIDASE_3	coord: 1..54 score: 9.44

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001897	Wax gourd	wgowgoB102
Bhi10G001897	Cucumber (Gy14) v1	cgywgoB150
Bhi10G001897	Cucumber (Gy14) v1	cgywgoB500
Bhi10G001897	Cucumber (Gy14) v2	cgybwgoB169
Bhi10G001897	Cucumber (Gy14) v2	cgybwgoB587
Bhi10G001897	Cucurbita maxima (Rimu)	cmawgoB0761
Bhi10G001897	Cucurbita maxima (Rimu)	cmawgoB0783
Bhi10G001897	Cucurbita moschata (Rifu)	cmowgoB0751
Bhi10G001897	Cucurbita moschata (Rifu)	cmowgoB0777
Bhi10G001897	Cucurbita pepo (Zucchini)	cpewgoB0083
Bhi10G001897	Cucurbita pepo (Zucchini)	cpewgoB0356
Bhi10G001897	Cucurbita pepo (Zucchini)	cpewgoB0948
Bhi10G001897	Wild cucumber (PI 183967)	cpiwgoB172
Bhi10G001897	Wild cucumber (PI 183967)	cpiwgoB620
Bhi10G001897	Cucumber (Chinese Long) v3	cucwgoB181
Bhi10G001897	Cucumber (Chinese Long) v3	cucwgoB635
Bhi10G001897	Cucumber (Chinese Long) v2	cuwgoB175
Bhi10G001897	Cucumber (Chinese Long) v2	cuwgoB615
Bhi10G001897	Bottle gourd (USVL1VR-Ls)	lsiwgoB072
Bhi10G001897	Bottle gourd (USVL1VR-Ls)	lsiwgoB162
Bhi10G001897	Watermelon (Charleston Gray)	wcgwgoB222
Bhi10G001897	Watermelon (97103) v2	wgowmbB345
Bhi10G001897	Watermelon (97103) v1	wgowmB373
Bhi10G001897	Watermelon (97103) v1	wgowmB384
Bhi10G001897	Silver-seed gourd	carwgoB1247