Bhi10G001823 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001823
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	30S ribosomal protein S12, chloroplastic-like
Location	chr10 : 57354145 .. 57354577 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAGCTGTTGTTCCCCTCCTAAGGGCAGGTTCTTACGCGTTACTCACTCGTCCGCCACTGGAAACACCACTTCCCGTCCAACTTGCATGTGTTAAGCATGCCGCCAGCATTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTTGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCACTTCATATTCGCCTGGAGTTCGCTCCCAAAAATATAACCATCCCCACTTCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGAGGGATCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

mRNA sequence

TTCCAGCTGTTGTTCCCCTCCTAAGGGCAGGTTCTTACGCGTTACTCACTCGTCCGCCACTGGAAACACCACTTCCCGTCCAACTTGCATGTGTTAAGCATGCCGCCAGCATTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTTGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCACTTCATATTCGCCTGGAGTTCGCTCCCAAAAATATAACCATCCCCACTTCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGAGGGATCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

Coding sequence (CDS)

ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTTGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCACTTCATATTCGCCTGGAGTTCGCTCCCAAAAATATAACCATCCCCACTTCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGAGGGATCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

Protein sequence

MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPFSFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR

Homology

[Close]

BLAST of Bhi10G001823 vs. TrEMBL
Match: tr|A0A2G2VND6|A0A2G2VND6_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1   MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
           MRFIVALLIASLFVDKA+ ELSFIPRHNLYPC SYSP VRSQKY+HP  LTSIPRASYPF
Sbjct: 234 MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPRASYPF 293

Query: 61  SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
           S +   G++  RKTHIG RDNQARTDDF HVK  LYR
Sbjct: 294 SLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330

[Close]

BLAST of Bhi10G001823 vs. TrEMBL
Match: tr|A0A2G3DGB3|A0A2G3DGB3_CAPCH (Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-33
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
           MRFIVALLIASLFVDKAN ELSFIPRHNLYPC SYSPGV SQKY+HP  LTSIPRASYPF
Sbjct: 82  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVHSQKYSHPCPLTSIPRASYPF 141

Query: 61  SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVK 93
           S + G G++  RKT IG RDNQARTDDF HVK
Sbjct: 142 SLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of Bhi10G001823 vs. TrEMBL
Match: tr|A0A0A0K6M9|A0A0A0K6M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G329345 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIA LFVDKANL+LSFIPRHNLYPC SYSPGVRSQKYNHPH L SIPRASYPF
Sbjct: 1  MRFIVALLIAFLFVDKANLKLSFIPRHNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQ-ARTDDFRH 91
          SFDH EG+SQNRKTHIGFRD   AR     H
Sbjct: 61 SFDHCEGASQNRKTHIGFRDKSVARAKPIAH 91

[Close]

BLAST of Bhi10G001823 vs. TrEMBL
Match: tr|A0A2P1MA84|A0A2P1MA84_HELAN (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=orf279 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSFIPR NLYPC SYSPGVRSQKY+HP  LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRPNLYPCASYSPGVRSQKYSHPCPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIG 78
          SF+HG  ++QN K  +G
Sbjct: 61 SFNHGGVANQNEKLTLG 77

[Close]

BLAST of Bhi10G001823 vs. TrEMBL
Match: tr|U5D449|U5D449_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00030p00239160 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.9e-24
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIAS FVDKA+ ELSFIPRHNL  CT        Q+Y+H + L S+P+ASY F
Sbjct: 1  MRFIVALLIASFFVDKADSELSFIPRHNLCSCT--------QQYSHSYPLKSLPQASYAF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG G+SQN+K  IGFRDN ART +F HVK TL R
Sbjct: 61 SFDHGGGASQNKKACIGFRDNHARTYEFHHVKVTLDR 89

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: PHT34490.1 (hypothetical protein CQW23_26290 [Capsicum baccatum])

HSP 1 Score: 153.3 bits (386), Expect = 4.2e-34
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1   MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
           MRFIVALLIASLFVDKA+ ELSFIPRHNLYPC SYSP VRSQKY+HP  LTSIPRASYPF
Sbjct: 234 MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPRASYPF 293

Query: 61  SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
           S +   G++  RKTHIG RDNQARTDDF HVK  LYR
Sbjct: 294 SLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: PHU30032.1 (Photosystem II protein D1 [Capsicum chinense])

HSP 1 Score: 149.8 bits (377), Expect = 4.7e-33
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
           MRFIVALLIASLFVDKAN ELSFIPRHNLYPC SYSPGV SQKY+HP  LTSIPRASYPF
Sbjct: 82  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVHSQKYSHPCPLTSIPRASYPF 141

Query: 61  SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVK 93
           S + G G++  RKT IG RDNQARTDDF HVK
Sbjct: 142 SLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: KGN44549.1 (hypothetical protein Csa_7G329345 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 6.1e-33
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIA LFVDKANL+LSFIPRHNLYPC SYSPGVRSQKYNHPH L SIPRASYPF
Sbjct: 1  MRFIVALLIAFLFVDKANLKLSFIPRHNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQ-ARTDDFRH 91
          SFDH EG+SQNRKTHIGFRD   AR     H
Sbjct: 61 SFDHCEGASQNRKTHIGFRDKSVARAKPIAH 91

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: RDY14313.1 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic, partial [Mucuna pruriens])

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRF+VALLIASLFVDKA+ E SFIPRHNLYP  SYSPGVRSQKY+ P    +IPRASYPF
Sbjct: 1  MRFLVALLIASLFVDKADSEFSFIPRHNLYPGASYSPGVRSQKYS-PLTPRAIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVK 93
          S         NRKT+IGFRDNQARTD+F HVK
Sbjct: 61 SIII-RSRHPNRKTYIGFRDNQARTDNFHHVK 90

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: AVP27573.1 (hypothetical protein (mitochondrion) [Helianthus annuus])

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSFIPR NLYPC SYSPGVRSQKY+HP  LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRPNLYPCASYSPGVRSQKYSHPCPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIG 78
          SF+HG  ++QN K  +G
Sbjct: 61 SFNHGGVANQNEKLTLG 77

The following BLAST results are available for this feature:

BLAST of Bhi10G001823 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001823 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001823 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G2VND6\|A0A2G2VND6_CAPBA	2.8e-34	79.38	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=4 SV=1	[more]
tr\|A0A2G3DGB3\|A0A2G3DGB3_CAPCH	3.1e-33	81.52	Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=4 SV=1	[more]
tr\|A0A0A0K6M9\|A0A0A0K6M9_CUCSA	4.0e-33	83.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G329345 PE=4 SV=1	[more]
tr\|A0A2P1MA84\|A0A2P1MA84_HELAN	1.5e-24	79.22	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=orf279 PE=4 SV=1	[more]
tr\|U5D449\|U5D449_AMBTC	5.9e-24	65.98	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00030p00239160...	[more]

BLAST of Bhi10G001823 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT34490.1	4.2e-34	79.38	hypothetical protein CQW23_26290 [Capsicum baccatum]	[more]
PHU30032.1	4.7e-33	81.52	Photosystem II protein D1 [Capsicum chinense]	[more]
KGN44549.1	6.1e-33	83.52	hypothetical protein Csa_7G329345 [Cucumis sativus]	[more]
RDY14313.1	1.8e-24	72.83	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic, partial [Mucuna pruri...	[more]
AVP27573.1	2.3e-24	79.22	hypothetical protein (mitochondrion) [Helianthus annuus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001823	Bhi10M001823	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001823	Cucumber (Gy14) v1	cgywgoB741
Bhi10G001823	Cucumber (Gy14) v2	cgybwgoB169
Bhi10G001823	Cucumber (Gy14) v2	cgybwgoB174
Bhi10G001823	Cucurbita maxima (Rimu)	cmawgoB0694
Bhi10G001823	Cucurbita maxima (Rimu)	cmawgoB0750
Bhi10G001823	Cucurbita moschata (Rifu)	cmowgoB0689
Bhi10G001823	Cucurbita moschata (Rifu)	cmowgoB0741
Bhi10G001823	Cucurbita pepo (Zucchini)	cpewgoB0356
Bhi10G001823	Cucurbita pepo (Zucchini)	cpewgoB0962
Bhi10G001823	Wild cucumber (PI 183967)	cpiwgoB172
Bhi10G001823	Cucumber (Chinese Long) v3	cucwgoB181
Bhi10G001823	Cucumber (Chinese Long) v2	cuwgoB175
Bhi10G001823	Bottle gourd (USVL1VR-Ls)	lsiwgoB072
Bhi10G001823	Melon (DHL92) v3.6.1	medwgoB132
Bhi10G001823	Melon (DHL92) v3.5.1	mewgoB129
Bhi10G001823	Watermelon (Charleston Gray)	wcgwgoB284
Bhi10G001823	Watermelon (Charleston Gray)	wcgwgoB296
Bhi10G001823	Watermelon (97103) v2	wgowmbB354
Bhi10G001823	Watermelon (97103) v2	wgowmbB366
Bhi10G001823	Watermelon (97103) v1	wgowmB380
Bhi10G001823	Watermelon (97103) v1	wgowmB394
Bhi10G001823	Silver-seed gourd	carwgoB1163
Bhi10G001823	Silver-seed gourd	carwgoB1242