Bhi10G001739 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001739
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Phosphoenolpyruvate carboxykinase (Atp)
Location	chr10 : 53956917 .. 53957291 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGGTTTTGGCGCTCTTATGGTCTTAATTGCACTCTTGCTGGGAAAGGTGTGCTAGTGCTGGACCAGGTTTTTCAAAATTTGAAGTCTAGTGAACTATTCCAGAAGGGTGCAGCTGCCGCAGGTAGATTCATAAATGTTCACTTCTTGATGTATATATATATATTTGCATTTCTATACTGTTTTCTGTTTGTTAAATCTTCTTTTCCCCTTTTAGAATTGCTATCAGGGTTTCCTGTTCATGTTAGGGGCCACACACTTCGAGAGTCATCAGAAATCTCCAAGCCACAATTCACTAAACTTTTAAAGCAGGCATGCCTTTTAGCTTTTGGCAATCTTTATGTCCTAATTTGCTCATCAGCTGTATATTTTTAG

mRNA sequence

GGAGGGTTTTGGCGCTCTTATGGTCTTAATTGCACTCTTGCTGGGAAAGGTGTGCTAGTGCTGGACCAGGTTTTTCAAAATTTGAAGTCTAGTGAACTATTCCAGAAGGGTGCAGCTGCCGCAGAATTGCTATCAGGGTTTCCTGTTCATGTTAGGGGCCACACACTTCGAGAGTCATCAGAAATCTCCAAGCCACAATTCACTAAACTTTTAAAGCAGGCATGCCTTTTAGCTTTTGGCAATCTTTATGTCCTAATTTGCTCATCAGCTGTATATTTTTAG

Coding sequence (CDS)

GGAGGGTTTTGGCGCTCTTATGGTCTTAATTGCACTCTTGCTGGGAAAGGTGTGCTAGTGCTGGACCAGGTTTTTCAAAATTTGAAGTCTAGTGAACTATTCCAGAAGGGTGCAGCTGCCGCAGAATTGCTATCAGGGTTTCCTGTTCATGTTAGGGGCCACACACTTCGAGAGTCATCAGAAATCTCCAAGCCACAATTCACTAAACTTTTAAAGCAGGCATGCCTTTTAGCTTTTGGCAATCTTTATGTCCTAATTTGCTCATCAGCTGTATATTTTTAG

Protein sequence

GGFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSEISKPQFTKLLKQACLLAFGNLYVLICSSAVYF

Homology

[Close]

BLAST of Bhi10G001739 vs. TrEMBL
Match: tr|A0A1S3C922|A0A1S3C922_CUCME (uncharacterized protein LOC103498368 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498368 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-28
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 2  GFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSE 61
          G+WRS+GLN  LAGKGVLVLDQVFQNLKSSELFQKGA  AELLSGFP+HVRGHTLR SS+
Sbjct: 3  GYWRSHGLNSALAGKGVLVLDQVFQNLKSSELFQKGATVAELLSGFPIHVRGHTLRGSSD 62

Query: 62 ISKPQFTKLLKQAC--LLAFGNLYV 85
          ISKPQFTKLLKQ    + +  N+YV
Sbjct: 63 ISKPQFTKLLKQVTSHISSISNIYV 87

[Close]

BLAST of Bhi10G001739 vs. TrEMBL
Match: tr|A0A1S3CAS4|A0A1S3CAS4_CUCME (uncharacterized protein LOC103498368 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498368 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-28
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 2  GFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSE 61
          G+WRS+GLN  LAGKGVLVLDQVFQNLKSSELFQKGA  AELLSGFP+HVRGHTLR SS+
Sbjct: 3  GYWRSHGLNSALAGKGVLVLDQVFQNLKSSELFQKGATVAELLSGFPIHVRGHTLRGSSD 62

Query: 62 ISKPQFTKLLKQAC--LLAFGNLYV 85
          ISKPQFTKLLKQ    + +  N+YV
Sbjct: 63 ISKPQFTKLLKQVTSHISSISNIYV 87

[Close]

BLAST of Bhi10G001739 vs. TrEMBL
Match: tr|A0A1S3C9N2|A0A1S3C9N2_CUCME (uncharacterized protein LOC103498368 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498368 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.7e-25
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 2  GFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSE 61
          G+WRS+GLN  LAGKGVLVLDQVFQNLKSSELFQKGA  A    GFP+HVRGHTLR SS+
Sbjct: 3  GYWRSHGLNSALAGKGVLVLDQVFQNLKSSELFQKGATVA----GFPIHVRGHTLRGSSD 62

Query: 62 ISKPQFTKLLKQAC--LLAFGNLYV 85
          ISKPQFTKLLKQ    + +  N+YV
Sbjct: 63 ISKPQFTKLLKQVTSHISSISNIYV 83

[Close]

BLAST of Bhi10G001739 vs. TrEMBL
Match: tr|A0A200PXK0|A0A200PXK0_9MAGN (Phosphoenolpyruvate carboxykinase OS=Macleaya cordata OX=56857 GN=BVC80_9095g117 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 6   SYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSEISKP 65
           SYGLN  LAG+GV+V D+ F NLKSSEL QKGA  AE LSG PVHVRG+ +  +SEISK 
Sbjct: 76  SYGLNWALAGRGVVVKDKAFHNLKSSELQQKGATTAESLSGIPVHVRGNIVGGASEISKA 135

Query: 66  QFTKLLKQAC 76
           QF+KLLKQAC
Sbjct: 136 QFSKLLKQAC 145

[Close]

BLAST of Bhi10G001739 vs. TrEMBL
Match: tr|A0A1U7Z6M9|A0A1U7Z6M9_NELNU (uncharacterized protein LOC104587315 OS=Nelumbo nucifera OX=4432 GN=LOC104587315 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 6   SYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSEISKP 65
           SYGLN  LAG+GV+V D+ F NLKSSEL QKGAA+AE LSG P+H+RG+    +SEISK 
Sbjct: 65  SYGLNWALAGRGVIVKDKAFYNLKSSELQQKGAASAESLSGLPIHIRGNATGGASEISKA 124

Query: 66  QFTKLLKQAC--LLAFGNLYV 85
           QF+KLLKQ    L +  N++V
Sbjct: 125 QFSKLLKQVTSHLSSISNVFV 145

[Close]

BLAST of Bhi10G001739 vs. NCBI nr
Match: XP_008459171.1 (PREDICTED: uncharacterized protein LOC103498368 isoform X1 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 3.3e-28
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 2  GFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSE 61
          G+WRS+GLN  LAGKGVLVLDQVFQNLKSSELFQKGA  AELLSGFP+HVRGHTLR SS+
Sbjct: 3  GYWRSHGLNSALAGKGVLVLDQVFQNLKSSELFQKGATVAELLSGFPIHVRGHTLRGSSD 62

Query: 62 ISKPQFTKLLKQAC--LLAFGNLYV 85
          ISKPQFTKLLKQ    + +  N+YV
Sbjct: 63 ISKPQFTKLLKQVTSHISSISNIYV 87

[Close]

BLAST of Bhi10G001739 vs. NCBI nr
Match: XP_008459172.1 (PREDICTED: uncharacterized protein LOC103498368 isoform X2 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 3.3e-28
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 2  GFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESSE 61
          G+WRS+GLN  LAGKGVLVLDQVFQNLKSSELFQKGA  AELLSGFP+HVRGHTLR SS+
Sbjct: 3  GYWRSHGLNSALAGKGVLVLDQVFQNLKSSELFQKGATVAELLSGFPIHVRGHTLRGSSD 62

Query: 62 ISKPQFTKLLKQAC--LLAFGNLYV 85
          ISKPQFTKLLKQ    + +  N+YV
Sbjct: 63 ISKPQFTKLLKQVTSHISSISNIYV 87

[Close]

BLAST of Bhi10G001739 vs. NCBI nr
Match: XP_004148104.1 (PREDICTED: uncharacterized protein LOC101222903 isoform X2 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  GGFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESS 60
          GG W S+GLN  LAGKGVLVLD+VFQNLKSSELFQKGA  AE LSGFP+HVRGHT + SS
Sbjct: 2  GGSWHSHGLNSALAGKGVLVLDKVFQNLKSSELFQKGATVAEFLSGFPIHVRGHTFQGSS 61

Query: 61 EISKPQFTKLLKQAC--LLAFGNLYV 85
           ISKPQFTKLLKQ    + +  N+YV
Sbjct: 62 NISKPQFTKLLKQVTSHISSISNIYV 87

[Close]

BLAST of Bhi10G001739 vs. NCBI nr
Match: XP_011650086.1 (PREDICTED: uncharacterized protein LOC101222903 isoform X1 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  GGFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESS 60
          GG W S+GLN  LAGKGVLVLD+VFQNLKSSELFQKGA  AE LSGFP+HVRGHT + SS
Sbjct: 2  GGSWHSHGLNSALAGKGVLVLDKVFQNLKSSELFQKGATVAEFLSGFPIHVRGHTFQGSS 61

Query: 61 EISKPQFTKLLKQAC--LLAFGNLYV 85
           ISKPQFTKLLKQ    + +  N+YV
Sbjct: 62 NISKPQFTKLLKQVTSHISSISNIYV 87

[Close]

BLAST of Bhi10G001739 vs. NCBI nr
Match: XP_011650088.1 (PREDICTED: uncharacterized protein LOC101222903 isoform X4 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  GGFWRSYGLNCTLAGKGVLVLDQVFQNLKSSELFQKGAAAAELLSGFPVHVRGHTLRESS 60
          GG W S+GLN  LAGKGVLVLD+VFQNLKSSELFQKGA  AE LSGFP+HVRGHT + SS
Sbjct: 2  GGSWHSHGLNSALAGKGVLVLDKVFQNLKSSELFQKGATVAEFLSGFPIHVRGHTFQGSS 61

Query: 61 EISKPQFTKLLKQAC--LLAFGNLYV 85
           ISKPQFTKLLKQ    + +  N+YV
Sbjct: 62 NISKPQFTKLLKQVTSHISSISNIYV 87

The following BLAST results are available for this feature:

BLAST of Bhi10G001739 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001739 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001739 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C922\|A0A1S3C922_CUCME	2.2e-28	77.65	uncharacterized protein LOC103498368 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CAS4\|A0A1S3CAS4_CUCME	2.2e-28	77.65	uncharacterized protein LOC103498368 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C9N2\|A0A1S3C9N2_CUCME	8.7e-25	72.94	uncharacterized protein LOC103498368 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A200PXK0\|A0A200PXK0_9MAGN	1.0e-17	70.00	Phosphoenolpyruvate carboxykinase OS=Macleaya cordata OX=56857 GN=BVC80_9095g117...	[more]
tr\|A0A1U7Z6M9\|A0A1U7Z6M9_NELNU	1.5e-16	60.49	uncharacterized protein LOC104587315 OS=Nelumbo nucifera OX=4432 GN=LOC104587315...	[more]

BLAST of Bhi10G001739 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459171.1	3.3e-28	77.65	PREDICTED: uncharacterized protein LOC103498368 isoform X1 [Cucumis melo]	[more]
XP_008459172.1	3.3e-28	77.65	PREDICTED: uncharacterized protein LOC103498368 isoform X2 [Cucumis melo]	[more]
XP_004148104.1	1.2e-25	72.09	PREDICTED: uncharacterized protein LOC101222903 isoform X2 [Cucumis sativus]	[more]
XP_011650086.1	1.2e-25	72.09	PREDICTED: uncharacterized protein LOC101222903 isoform X1 [Cucumis sativus]	[more]
XP_011650088.1	1.2e-25	72.09	PREDICTED: uncharacterized protein LOC101222903 isoform X4 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006094	gluconeogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR001272	PEP_carboxykinase_ATP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0016310	phosphorylation
biological_process	GO:0015976	carbon utilization
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001739	Bhi10M001739	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001272	Phosphoenolpyruvate carboxykinase, ATP-utilising	PANTHER	PTHR30031	PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP	coord: 6..73
None	No IPR available	PANTHER	PTHR30031:SF2	SUBFAMILY NOT NAMED	coord: 6..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi10G001739	ClCG09G017160	Watermelon (Charleston Gray)	wcgwgoB052
Bhi10G001739	CSPI02G27930	Wild cucumber (PI 183967)	cpiwgoB179
Bhi10G001739	CmaCh02G004550	Cucurbita maxima (Rimu)	cmawgoB0762
Bhi10G001739	CmoCh02G004630	Cucurbita moschata (Rifu)	cmowgoB0752
Bhi10G001739	Lsi10G002790	Bottle gourd (USVL1VR-Ls)	lsiwgoB074
Bhi10G001739	Carg24047	Silver-seed gourd	carwgoB1240
Bhi10G001739	CsaV3_2G036620	Cucumber (Chinese Long) v3	cucwgoB186
Bhi10G001739	Cla010237	Watermelon (97103) v1	wgowmB353
Bhi10G001739	Cla97C09G178710	Watermelon (97103) v2	wgowmbB390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001739	Cucurbita maxima (Rimu)	cmawgoB0699
Bhi10G001739	Cucurbita moschata (Rifu)	cmowgoB0693
Bhi10G001739	Cucurbita pepo (Zucchini)	cpewgoB0360
Bhi10G001739	Wild cucumber (PI 183967)	cpiwgoB172
Bhi10G001739	Cucumber (Chinese Long) v2	cuwgoB175
Bhi10G001739	Melon (DHL92) v3.6.1	medwgoB127
Bhi10G001739	Silver-seed gourd	carwgoB0930