Bhi10G001737 (gene) Wax gourd

NameBhi10G001737
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRibosomal protein L2
Locationchr10 : 53854349 .. 53854618 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAGAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCTGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTACCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

mRNA sequence

ATGAGAGAGAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCTGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTACCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Coding sequence (CDS)

ATGAGAGAGAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCTGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTACCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Protein sequence

MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV
BLAST of Bhi10G001737 vs. TAIR10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-33
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MR+K+RGK+TFSLCEV+K RTHSILWAHRIK KA LSW+SFRRQ+TLGLVG A H +SKP
Sbjct: 208 MRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKP 267

Query: 61  ETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 89
           +TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 268 KTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

BLAST of Bhi10G001737 vs. TAIR10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-31
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MR+K+RGK+TFSLCEV+K RTHSILWAHRIK KA LSW+SFRRQ+TLGLVG A H +SKP
Sbjct: 208 MRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKP 267

Query: 61  ETDQGSLPAKPIGE-----------GPKDGACKVN 85
           +TDQG+LPAKPIGE             KDGACKV+
Sbjct: 268 KTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVD 302

BLAST of Bhi10G001737 vs. Swiss-Prot
Match: sp|P93311|RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-32
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MR+K+RGK+TFSLCEV+K RTHSILWAHRIK KA LSW+SFRRQ+TLGLVG A H +SKP
Sbjct: 208 MRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKP 267

Query: 61  ETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 89
           +TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 268 KTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

BLAST of Bhi10G001737 vs. Swiss-Prot
Match: sp|P0C8K6|RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-28
Identity = 71/128 (55.47%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREK  GK TFSLCE+RKWRTH +LWAHRIKRKAALSW+S R+Q+TL LVG AEHNESK 
Sbjct: 153 MREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKL 212

Query: 61  ETDQ---------------------------------------GSLPAK-PIGEGPKDGA 89
           + DQ                                       GSLPAK PIGEGPKDGA
Sbjct: 213 KADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGA 272

BLAST of Bhi10G001737 vs. Swiss-Prot
Match: sp|Q2F969|RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-28
Identity = 71/128 (55.47%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREK  GK TFSLCE+RKWRTH +LWAHRIKRKAALSW+S R+Q+TL LVG AEHNESK 
Sbjct: 153 MREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKL 212

Query: 61  ETDQ---------------------------------------GSLPAK-PIGEGPKDGA 89
           + DQ                                       GSLPAK PIGEGPKDGA
Sbjct: 213 KADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGA 272

BLAST of Bhi10G001737 vs. Swiss-Prot
Match: sp|P92812|RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-28
Identity = 71/128 (55.47%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREK  GK TFSLCE+RKWRTH +LWAHRIKRKAALSW+S R+Q+TL LVG AEHNESK 
Sbjct: 153 MREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKL 212

Query: 61  ETDQ---------------------------------------GSLPAK-PIGEGPKDGA 89
           + DQ                                       GSLPAK PIGEGPKDGA
Sbjct: 213 KADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGA 272

BLAST of Bhi10G001737 vs. TrEMBL
Match: tr|D5I399|D5I399_CITLA (Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MR+KLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP
Sbjct: 207 MRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           ETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 267 ETDQGSLPAKPIGEGPKDGACKVNRAPV 294

BLAST of Bhi10G001737 vs. TrEMBL
Match: tr|A0A200Q8E8|A0A200Q8E8_9MAGN (Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.5e-42
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLGLVG AEHNESKP
Sbjct: 207 MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPVV 90
           +TDQGSLPAKPIGEGPKDGACKV+RAPVV
Sbjct: 267 KTDQGSLPAKPIGEGPKDGACKVDRAPVV 295

BLAST of Bhi10G001737 vs. TrEMBL
Match: tr|A0A1B0THG8|A0A1B0THG8_NELNU (Ribosomal protein L2 OS=Nelumbo nucifera OX=4432 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREKL+GKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLGLVG AEHNESKP
Sbjct: 207 MREKLKGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           +TDQGSLPAKPIGEGPKDGACKV+RAPV
Sbjct: 267 KTDQGSLPAKPIGEGPKDGACKVDRAPV 294

BLAST of Bhi10G001737 vs. TrEMBL
Match: tr|A0A0M3ULW5|A0A0M3ULW5_CANSA (Ribosomal protein L2 OS=Cannabis sativa OX=3483 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREKL GKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLGLVG AEHNESKP
Sbjct: 212 MREKLIGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKP 271

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           +TDQGSLPAKPIGEGPKDGACKV+RAPV
Sbjct: 272 KTDQGSLPAKPIGEGPKDGACKVDRAPV 299

BLAST of Bhi10G001737 vs. TrEMBL
Match: tr|D5I3E9|D5I3E9_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREK+RGKNTFSLCEVRKWRTHSILWAHR+KRKAAL W+SFRRQET GLVGGAEHNESKP
Sbjct: 207 MREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           ETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 267 ETDPASLPAKPIGEGPKDGACKVNRAPV 294

BLAST of Bhi10G001737 vs. NCBI nr
Match: YP_003587229.1 (ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 (mitochondrion) [Citrullus lanatus])

HSP 1 Score: 183.0 bits (463), Expect = 4.6e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MR+KLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP
Sbjct: 207 MRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           ETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 267 ETDQGSLPAKPIGEGPKDGACKVNRAPV 294

BLAST of Bhi10G001737 vs. NCBI nr
Match: OVA06704.1 (Ribosomal protein L2 [Macleaya cordata])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLGLVG AEHNESKP
Sbjct: 207 MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPVV 90
           +TDQGSLPAKPIGEGPKDGACKV+RAPVV
Sbjct: 267 KTDQGSLPAKPIGEGPKDGACKVDRAPVV 295

BLAST of Bhi10G001737 vs. NCBI nr
Match: YP_009270682.1 (ribosomal protein L2 (mitochondrion) [Nelumbo nucifera] >ALL55135.1 ribosomal protein L2 (mitochondrion) [Nelumbo nucifera])

HSP 1 Score: 175.6 bits (444), Expect = 7.3e-41
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREKL+GKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLGLVG AEHNESKP
Sbjct: 207 MREKLKGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           +TDQGSLPAKPIGEGPKDGACKV+RAPV
Sbjct: 267 KTDQGSLPAKPIGEGPKDGACKVDRAPV 294

BLAST of Bhi10G001737 vs. NCBI nr
Match: YP_009243674.1 (ribosomal protein L2 (mitochondrion) [Cannabis sativa] >ALF04062.1 ribosomal protein L2 (mitochondrion) [Cannabis sativa] >AMR97549.1 ribosomal protein L2 (mitochondrion) [Cannabis sativa] >ANC49131.1 ribosomal protein L2 (mitochondrion) [Cannabis sativa])

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREKL GKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLGLVG AEHNESKP
Sbjct: 212 MREKLIGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKP 271

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           +TDQGSLPAKPIGEGPKDGACKV+RAPV
Sbjct: 272 KTDQGSLPAKPIGEGPKDGACKVDRAPV 299

BLAST of Bhi10G001737 vs. NCBI nr
Match: YP_003587363.1 (ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1   MREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKP 60
           MREK+RGKNTFSLCEVRKWRTHSILWAHR+KRKAAL W+SFRRQET GLVGGAEHNESKP
Sbjct: 207 MREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGAEHNESKP 266

Query: 61  ETDQGSLPAKPIGEGPKDGACKVNRAPV 89
           ETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 267 ETDPASLPAKPIGEGPKDGACKVNRAPV 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATMG00560.12.3e-3370.71Nucleic acid-binding, OB-fold-like protein[more]
AT2G07715.14.9e-3169.47Nucleic acid-binding, OB-fold-like protein[more]
Match NameE-valueIdentityDescription
sp|P93311|RM02_ARATH4.2e-3270.7160S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 ... [more]
sp|P0C8K6|RM02_ORYSA8.3e-2855.4760S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=... [more]
sp|Q2F969|RM02_ORYSI8.3e-2855.4760S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G... [more]
sp|P92812|RM02_ORYSJ8.3e-2855.4760S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947... [more]
Match NameE-valueIdentityDescription
tr|D5I399|D5I399_CITLA3.0e-4398.86Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=4 SV=1[more]
tr|A0A200Q8E8|A0A200Q8E8_9MAGN7.5e-4295.51Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1[more]
tr|A0A1B0THG8|A0A1B0THG8_NELNU4.8e-4194.32Ribosomal protein L2 OS=Nelumbo nucifera OX=4432 GN=rpl2 PE=4 SV=1[more]
tr|A0A0M3ULW5|A0A0M3ULW5_CANSA1.8e-4094.32Ribosomal protein L2 OS=Cannabis sativa OX=3483 GN=rpl2 PE=4 SV=1[more]
tr|D5I3E9|D5I3E9_CUCPE1.2e-3992.05Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
YP_003587229.14.6e-4398.86ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 (mitoc... [more]
OVA06704.11.1e-4195.51Ribosomal protein L2 [Macleaya cordata][more]
YP_009270682.17.3e-4194.32ribosomal protein L2 (mitochondrion) [Nelumbo nucifera] >ALL55135.1 ribosomal pr... [more]
YP_009243674.12.8e-4094.32ribosomal protein L2 (mitochondrion) [Cannabis sativa] >ALF04062.1 ribosomal pro... [more]
YP_003587363.11.8e-3992.05ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 (mitochon... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi10M001737Bhi10M001737mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..89

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None