Bhi10G001627 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001627
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr10 : 50623445 .. 50623811 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGATTGCAACACTTGCACCAGCTGCCCTAGCATATGTTGTTGGATGTCAATCCTCGAAAGAAGTTTGGGGATACTCTACTGAGTCATTTCTCCTCTAGTTTGTGTGCAAATGTTGTAAGCATCAAATCTGAACTTCAATCAATTTCAAAGAAACCTACTGAAACTATTGATCAGTATATTCAAGGCGTCAAAGAACTTAAAGATAAATTGGCAAATGTTTCTATTGTTATTGAAGATGAATACCTTGATAAATACATGAATGGCCTCTCTTATGATCACAACAATTTTCGCAATTCGATCCGCACTCGTGCATCCTCTGTTTCCTTTCAAGAACTTCCTGTTCTTCTTGTTTTCGAAGAA

mRNA sequence

ATGACAGTGATTGCAACACTTGCACCAGCTGCCCTAGCATATGTTAAGTTTGGGGATACTCTACTGAGTCATTTCTCCTCTAGTTTGTGTGCAAATGTTGTAAGCATCAAATCTGAACTTCAATCAATTTCAAAGAAACCTACTGAAACTATTGATCAGTATATTCAAGGCGTCAAAGAACTTAAAGATAAATTGGCAAATGTTTCTATTGTTATTGAAGATGAATACCTTGATAAATACATGAATGGCCTCTCTTATGATCACAACAATTTTCGCAATTCGATCCGCACTCGTGCATCCTCTGTTTCCTTTCAAGAACTTCCTGTTCTTCTTGTTTTCGAAGAA

Coding sequence (CDS)

ATGACAGTGATTGCAACACTTGCACCAGCTGCCCTAGCATATGTTAAGTTTGGGGATACTCTACTGAGTCATTTCTCCTCTAGTTTGTGTGCAAATGTTGTAAGCATCAAATCTGAACTTCAATCAATTTCAAAGAAACCTACTGAAACTATTGATCAGTATATTCAAGGCGTCAAAGAACTTAAAGATAAATTGGCAAATGTTTCTATTGTTATTGAAGATGAATACCTTGATAAATACATGAATGGCCTCTCTTATGATCACAACAATTTTCGCAATTCGATCCGCACTCGTGCATCCTCTGTTTCCTTTCAAGAACTTCCTGTTCTTCTTGTTTTCGAAGAA

Protein sequence

MTVIATLAPAALAYVKFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETIDQYIQGVKELKDKLANVSIVIEDEYLDKYMNGLSYDHNNFRNSIRTRASSVSFQELPVLLVFEE

Homology

[Close]

BLAST of Bhi10G001627 vs. TrEMBL
Match: tr|A0A1S3BIR3|A0A1S3BIR3_CUCME (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MTVI ATL+P ALAYV       +  D L   +SS   +NVV++KS+LQ+I KKP E+ID
Sbjct: 97  MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 156

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            YI+ +KE+KDKLANVS  I +E L  Y +NGL  ++N FR S+RTR+  V+F+EL VLL
Sbjct: 157 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 216

[Close]

BLAST of Bhi10G001627 vs. TrEMBL
Match: tr|A0A1S3BI58|A0A1S3BI58_CUCME (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MTVI ATL+P ALAYV       +  D L   +SS   +NVV++KS+LQ+I KKP E+ID
Sbjct: 97  MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 156

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            YI+ +KE+KDKLANVS  I +E L  Y +NGL  ++N FR S+RTR+  V+F+EL VLL
Sbjct: 157 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 216

[Close]

BLAST of Bhi10G001627 vs. TrEMBL
Match: tr|A0A1S4DWT9|A0A1S4DWT9_CUCME (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MTVI ATL+P ALAYV       +  D L   +SS   +NVV++KS+LQ+I KKP E+ID
Sbjct: 97  MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 156

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            YI+ +KE+KDKLANVS  I +E L  Y +NGL  ++N FR S+RTR+  V+F+EL VLL
Sbjct: 157 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 216

[Close]

BLAST of Bhi10G001627 vs. TrEMBL
Match: tr|A0A2N9FFB0|A0A2N9FFB0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13755 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 48/121 (39.67%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 3   VIATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETIDQYI 62
           + +TL+P  L+ V       +   TL + F+S+  ANV+++K ELQS+ KK T++I+ Y+
Sbjct: 106 IYSTLSPPVLSMVVGLHSAQEVWSTLETRFTSTARANVLNLKLELQSV-KKGTDSINAYM 165

Query: 63  QGVKELKDKLANVSIVIED-EYLDKYMNGLSYDHNNFRNSIRTRASSVSFQELPVLLVFE 116
           Q VK  +DKL+ V + I+D E L   + GL  ++++F ++IRTR  S++F++L VLL  E
Sbjct: 166 QRVKTARDKLSAVGVQIDDEEMLHMVLKGLPKEYSSFNSAIRTRDDSLTFEKLSVLLQTE 225

[Close]

BLAST of Bhi10G001627 vs. TrEMBL
Match: tr|A0A2N9GCB4|A0A2N9GCB4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24783 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 3   VIATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETIDQYI 62
           + +TL+P  L+ V       +   TL + F+S+  ANV+++K ELQS+ KK +++I  Y+
Sbjct: 101 IYSTLSPPVLSMVVGLHSAQEVWSTLETRFTSTARANVLNLKMELQSV-KKGSDSISAYM 160

Query: 63  QGVKELKDKLANVSIVIED-EYLDKYMNGLSYDHNNFRNSIRTRASSVSFQELPVLLVFE 116
           Q VK  +DKL+ V + I+D E L   + GL  D+++F ++IRTR  S++F++L VLL  E
Sbjct: 161 QRVKTARDKLSAVGVQIDDEEMLHMVLKGLPKDYSSFNSAIRTRDDSLTFEKLSVLLQTE 220

[Close]

BLAST of Bhi10G001627 vs. NCBI nr
Match: XP_022159298.1 (uncharacterized protein LOC111025709 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 67/124 (54.03%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MT++ ATL+P+ALAY+       +   TL+ ++SSS   NVV++KS LQSISKKP E+ID
Sbjct: 59  MTLLNATLSPSALAYMVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSISKKPGESID 118

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            Y+Q +KELKDKLANVS+++++E L  Y +NGL  + N F  S+ TR+ SVSF+EL VLL
Sbjct: 119 LYMQRIKELKDKLANVSVLVDNEDLLIYTLNGLPPEFNAFCTSMCTRSQSVSFEELYVLL 178

[Close]

BLAST of Bhi10G001627 vs. NCBI nr
Match: XP_022157455.1 (uncharacterized protein LOC111024149 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MT+I ATL+P+A AYV       +  DTL  H+SSS   NVV++KS+LQSISKK  E ID
Sbjct: 1   MTLINATLSPSAPAYVVGSTSSKEIWDTLEKHYSSSSRTNVVNLKSDLQSISKKVGECID 60

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            Y++ +KE+KDKL NVS+V++DE L  Y +NGL   +N FR S+RTR+ SV+F EL VL+
Sbjct: 61  DYVKRIKEVKDKLTNVSVVVDDEDLLIYTLNGLPSAYNVFRTSMRTRSQSVTFDELHVLM 120

[Close]

BLAST of Bhi10G001627 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-20
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MT++ A L+ +ALAYV       +   TL+ H+SSS   NVV++KS+LQSISKKP  +ID
Sbjct: 94  MTLLNAXLSSSALAYVVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSISKKPGXSID 153

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            Y+Q +KELKDKLANV +++++E L  Y +N L  + N FR S+RTR+ SVSF+EL VLL
Sbjct: 154 XYVQRIKELKDKLANVXVLVDNEDLLIYTLNXLPPEFNXFRTSMRTRSQSVSFEELHVLL 213

[Close]

BLAST of Bhi10G001627 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 3.5e-19
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MT+I ATL+  ALAYV       +  + L  H+SS+   NVV++KS+LQSI KK  E+ID
Sbjct: 121 MTLINATLSAEALAYVVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESID 180

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            Y++ +KE+KDK ANVSI I DEYL  Y +NGLS ++N    S+RTRA SVSF+EL V +
Sbjct: 181 AYVKRIKEIKDKFANVSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFM 240

[Close]

BLAST of Bhi10G001627 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 7.8e-19
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MTVI-ATLAPAALAYV-------KFGDTLLSHFSSSLCANVVSIKSELQSISKKPTETID 60
           MTVI ATL+P ALAYV       +  D L   +SS   +NVV++KS+LQ+I KKP E+ID
Sbjct: 97  MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 156

Query: 61  QYIQGVKELKDKLANVSIVIEDEYLDKY-MNGLSYDHNNFRNSIRTRASSVSFQELPVLL 116
            YI+ +KE+KDKLANVS  I +E L  Y +NGL  ++N FR S+RTR+  V+F+EL VLL
Sbjct: 157 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 216

The following BLAST results are available for this feature:

BLAST of Bhi10G001627 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001627 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001627 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIR3\|A0A1S3BIR3_CUCME	5.2e-19	53.23	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BI58\|A0A1S3BI58_CUCME	5.2e-19	53.23	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DWT9\|A0A1S4DWT9_CUCME	5.2e-19	53.23	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2N9FFB0\|A0A2N9FFB0_FAGSY	2.0e-10	39.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13755 PE=4 SV=1	[more]
tr\|A0A2N9GCB4\|A0A2N9GCB4_FAGSY	2.0e-10	39.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24783 PE=4 SV=1	[more]

BLAST of Bhi10G001627 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159298.1	1.9e-20	54.03	uncharacterized protein LOC111025709 [Momordica charantia]	[more]
XP_022157455.1	4.1e-20	54.03	uncharacterized protein LOC111024149 [Momordica charantia]	[more]
XP_022158689.1	7.0e-20	53.23	uncharacterized protein LOC111025150 [Momordica charantia]	[more]
XP_022150845.1	3.5e-19	52.42	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
XP_016900446.1	7.8e-19	53.23	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001627	Bhi10M001627	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 19..107 e-value: 3.6E-7 score: 29.8
None	No IPR available	PANTHER	PTHR11439:SF232	SUBFAMILY NOT NAMED	coord: 20..115
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 20..115

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001627	Wax gourd	wgowgoB072
Bhi10G001627	Cucumber (Gy14) v1	cgywgoB173
Bhi10G001627	Cucumber (Gy14) v1	cgywgoB488
Bhi10G001627	Cucumber (Gy14) v2	cgybwgoB175
Bhi10G001627	Cucumber (Gy14) v2	cgybwgoB656
Bhi10G001627	Cucurbita maxima (Rimu)	cmawgoB0668
Bhi10G001627	Cucurbita maxima (Rimu)	cmawgoB0684
Bhi10G001627	Cucurbita maxima (Rimu)	cmawgoB0745
Bhi10G001627	Cucurbita moschata (Rifu)	cmowgoB0666
Bhi10G001627	Cucurbita moschata (Rifu)	cmowgoB0679
Bhi10G001627	Cucurbita moschata (Rifu)	cmowgoB0736
Bhi10G001627	Cucurbita pepo (Zucchini)	cpewgoB0338
Bhi10G001627	Cucurbita pepo (Zucchini)	cpewgoB0363
Bhi10G001627	Cucurbita pepo (Zucchini)	cpewgoB0958
Bhi10G001627	Wild cucumber (PI 183967)	cpiwgoB181
Bhi10G001627	Wild cucumber (PI 183967)	cpiwgoB696
Bhi10G001627	Cucumber (Chinese Long) v3	cucwgoB187
Bhi10G001627	Cucumber (Chinese Long) v3	cucwgoB709
Bhi10G001627	Cucumber (Chinese Long) v2	cuwgoB182
Bhi10G001627	Cucumber (Chinese Long) v2	cuwgoB684
Bhi10G001627	Bottle gourd (USVL1VR-Ls)	lsiwgoB080
Bhi10G001627	Bottle gourd (USVL1VR-Ls)	lsiwgoB128
Bhi10G001627	Melon (DHL92) v3.6.1	medwgoB137
Bhi10G001627	Melon (DHL92) v3.6.1	medwgoB232
Bhi10G001627	Melon (DHL92) v3.5.1	mewgoB134
Bhi10G001627	Melon (DHL92) v3.5.1	mewgoB231
Bhi10G001627	Watermelon (Charleston Gray)	wcgwgoB167
Bhi10G001627	Watermelon (Charleston Gray)	wcgwgoB286
Bhi10G001627	Watermelon (97103) v2	wgowmbB352
Bhi10G001627	Watermelon (97103) v2	wgowmbB356
Bhi10G001627	Watermelon (97103) v1	wgowmB383
Bhi10G001627	Watermelon (97103) v1	wgowmB406
Bhi10G001627	Silver-seed gourd	carwgoB1037