Bhi10G001617 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001617
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	SEC12-like protein 1
Location	chr10 : 50328752 .. 50329317 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTTGTATTCTTGGAACAGGTGAGAAGGTTGTCACCGCCGTTTGGGACATCAGTAATTGGAAAAGAACTGAGTATAAGAGGTTGTTGAGAAAGCCTACTTGCATAATGTACATCAGTCGAGATGGAAAATATTTGGCTTTGTACGTCCATCTCATTATCAAATTGATTATTATTGTCTATTTTTAATCATGATTCTGTAATTTATGTTAGAACAATCAATAAATTACTGCCTAATACCTCAAGTACGATGATATCAGTGGCAACAAATTAGCAAGATAATTTGAAACAGTTCAATAGTCTTTTTTTTCTGTCTTTTCTGTATACCAAGTGTCTACCTCAAGTTTGATGATATCAGTGGCACCAAGTTAGCAAGATCATTTGAAACAGTTCAATAGTCTTTCTCTTCTGTCTTTTCTGTATACCAAGTTTCTAATTTTACGTTTTTGTTGCGCATTTCAATGTGTTTTACGATAACAATGTTCTTTCTAAGTGTGATAAATTTTCATTCTAGAGGAAGCAAGGATGGGGACGTATGTGTGGCTGAAGTAAAGAAAATGGAG

mRNA sequence

ATGGCTCGTTGTATTCTTGGAACAGGTGAGAAGGTTGTCACCGCCGTTTGGGACATCAGTAATTGGAAAAGAACTGAGTATAAGAGGTTGTTGAGAAAGCCTACTTGCATAATGTACATCAGTCGAGATGGAAAATATTTGGCTTTAGGAAGCAAGGATGGGGACGTATGTGTGGCTGAAGTAAAGAAAATGGAG

Coding sequence (CDS)

ATGGCTCGTTGTATTCTTGGAACAGGTGAGAAGGTTGTCACCGCCGTTTGGGACATCAGTAATTGGAAAAGAACTGAGTATAAGAGGTTGTTGAGAAAGCCTACTTGCATAATGTACATCAGTCGAGATGGAAAATATTTGGCTTTAGGAAGCAAGGATGGGGACGTATGTGTGGCTGAAGTAAAGAAAATGGAG

Protein sequence

MARCILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKKME

Homology

[Close]

BLAST of Bhi10G001617 vs. TAIR10
Match: AT3G52190.1 (phosphate transporter traffic facilitator1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-13
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C    G+  +  V+DIS WK+  +K+L RK    M +S DGKY+ALG KDGDV VAEVK 
Sbjct: 226 CAAQRGDTPMVNVYDISTWKKLGFKKLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKT 285

Query: 64  ME 66
           ME
Sbjct: 286 ME 287

[Close]

BLAST of Bhi10G001617 vs. TAIR10
Match: AT5G50550.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 7.5e-05
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 9   GEKVVTAVWDISNWKRTEYKRLLRKPTCIMY-ISRDGKYLALGSKDGDVCVAEVKKME 66
           G  ++T  WD ++W+R   K + R  +   + +S DGK LA+G+ +GDV + +  KM+
Sbjct: 253 GGSIIT--WDTTSWRRRSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLIIDSTKMQ 308

[Close]

BLAST of Bhi10G001617 vs. TAIR10
Match: AT5G50650.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 7.5e-05
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 9   GEKVVTAVWDISNWKRTEYKRLLRKPTCIMY-ISRDGKYLALGSKDGDVCVAEVKKME 66
           G  ++T  WD ++W+R   K + R  +   + +S DGK LA+G+ +GDV + +  KM+
Sbjct: 253 GGSIIT--WDTTSWRRRSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLIIDSTKMQ 308

[Close]

BLAST of Bhi10G001617 vs. TAIR10
Match: AT2G01470.1 (SEC12P-like 2 protein)

HSP 1 Score: 39.7 bits (91), Expect = 8.3e-04
Identity = 19/57 (33.33%), Postives = 30/57 (52.63%), Query Frame = 0


Query: 9   GEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKKME 66
           G  ++T   D   WKR   K + +       +S DGK LA+G+ +GDV + E  +M+
Sbjct: 264 GGSIITC--DTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGDVLILESTRMQ 318

[Close]

BLAST of Bhi10G001617 vs. Swiss-Prot
Match: sp|Q8GYE0|PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 4.6e-12
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C    G+  +  V+DIS WK+  +K+L RK    M +S DGKY+ALG KDGDV VAEVK 
Sbjct: 226 CAAQRGDTPMVNVYDISTWKKLGFKKLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKT 285

Query: 64  ME 66
           ME
Sbjct: 286 ME 287

[Close]

BLAST of Bhi10G001617 vs. TrEMBL
Match: tr|A0A1S3C4T2|A0A1S3C4T2_CUCME (SEC12-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103496477 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP CIM ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 221 CTVQKGEKAVTAVWDISNWKRIGYKRLLRKPACIMSISRDGKYLALGSKDGDVCVAEVKK 280

Query: 64  ME 66
           ME
Sbjct: 281 ME 282

[Close]

BLAST of Bhi10G001617 vs. TrEMBL
Match: tr|A0A0A0LSQ7|A0A0A0LSQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385000 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP CIM ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 220 CTVQKGEKAVTAVWDISNWKRIGYKRLLRKPACIMSISRDGKYLALGSKDGDVCVAEVKK 279

Query: 64  ME 66
           ME
Sbjct: 280 ME 281

[Close]

BLAST of Bhi10G001617 vs. TrEMBL
Match: tr|A0A2G5EGI7|A0A2G5EGI7_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00901055v1 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  G+K VTAVWDISNW R  YKRLLRKP  +M IS DGKYLALGSKDGDVCV +VKK
Sbjct: 215 CTVQKGDKAVTAVWDISNWNRIGYKRLLRKPPSVMSISLDGKYLALGSKDGDVCVVDVKK 274

Query: 64  ME 66
           ME
Sbjct: 275 ME 276

[Close]

BLAST of Bhi10G001617 vs. TrEMBL
Match: tr|A0A2C9V3D8|A0A2C9V3D8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G053800 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  G+K VTAV+DIS WK+  YKRLL+KP C+M +S DGKYLALGSKDGD+CVAEVKK
Sbjct: 85  CTVQRGDKAVTAVYDISTWKKIGYKRLLKKPACVMSVSLDGKYLALGSKDGDICVAEVKK 144

Query: 64  ME 66
           ME
Sbjct: 145 ME 146

[Close]

BLAST of Bhi10G001617 vs. TrEMBL
Match: tr|B9T3V3|B9T3V3_RICCO (Nucleotide binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0114680 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  G+K  TAV+DIS WK+  YKRLL+KP CIM +S DGKYLALGSKDGD+CVAEVKK
Sbjct: 218 CAVQRGDKATTAVYDISTWKKIGYKRLLKKPACIMSVSLDGKYLALGSKDGDICVAEVKK 277

Query: 64  ME 66
           ME
Sbjct: 278 ME 279

[Close]

BLAST of Bhi10G001617 vs. NCBI nr
Match: XP_004138683.1 (PREDICTED: SEC12-like protein 1 [Cucumis sativus] >KGN63031.1 hypothetical protein Csa_2G385000 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP CIM ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 220 CTVQKGEKAVTAVWDISNWKRIGYKRLLRKPACIMSISRDGKYLALGSKDGDVCVAEVKK 279

Query: 64  ME 66
           ME
Sbjct: 280 ME 281

[Close]

BLAST of Bhi10G001617 vs. NCBI nr
Match: XP_008456561.1 (PREDICTED: SEC12-like protein 1 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP CIM ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 221 CTVQKGEKAVTAVWDISNWKRIGYKRLLRKPACIMSISRDGKYLALGSKDGDVCVAEVKK 280

Query: 64  ME 66
           ME
Sbjct: 281 ME 282

[Close]

BLAST of Bhi10G001617 vs. NCBI nr
Match: XP_022958109.1 (SEC12-like protein 1 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-22
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP C+M ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 221 CTVQRGEKAVTAVWDISNWKRIGYKRLLRKPACVMSISRDGKYLALGSKDGDVCVAEVKK 280

Query: 64  ME 66
           ME
Sbjct: 281 ME 282

[Close]

BLAST of Bhi10G001617 vs. NCBI nr
Match: XP_022990379.1 (SEC12-like protein 1 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-22
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP C+M ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 221 CTVQRGEKAVTAVWDISNWKRIGYKRLLRKPACVMSISRDGKYLALGSKDGDVCVAEVKK 280

Query: 64  ME 66
           ME
Sbjct: 281 ME 282

[Close]

BLAST of Bhi10G001617 vs. NCBI nr
Match: XP_023549412.1 (SEC12-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-22
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   CILGTGEKVVTAVWDISNWKRTEYKRLLRKPTCIMYISRDGKYLALGSKDGDVCVAEVKK 63
           C +  GEK VTAVWDISNWKR  YKRLLRKP C+M ISRDGKYLALGSKDGDVCVAEVKK
Sbjct: 221 CTVQRGEKAVTAVWDISNWKRIGYKRLLRKPACVMSISRDGKYLALGSKDGDVCVAEVKK 280

Query: 64  ME 66
           ME
Sbjct: 281 ME 282

The following BLAST results are available for this feature:

BLAST of Bhi10G001617 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52190.1	2.6e-13	53.23	phosphate transporter traffic facilitator1	[more]
AT5G50550.1	7.5e-05	34.48	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G50650.1	7.5e-05	34.48	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G01470.1	8.3e-04	33.33	SEC12P-like 2 protein	[more]

BLAST of Bhi10G001617 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYE0\|PHF1_ARATH	4.6e-12	53.23	SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2	[more]

BLAST of Bhi10G001617 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4T2\|A0A1S3C4T2_CUCME	1.3e-22	85.48	SEC12-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103496477 PE=4 SV=1	[more]
tr\|A0A0A0LSQ7\|A0A0A0LSQ7_CUCSA	1.3e-22	85.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385000 PE=4 SV=1	[more]
tr\|A0A2G5EGI7\|A0A2G5EGI7_AQUCA	1.1e-18	74.19	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00901055v1 PE=4...	[more]
tr\|A0A2C9V3D8\|A0A2C9V3D8_MANES	1.1e-18	70.97	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G053800 PE=4 SV=...	[more]
tr\|B9T3V3\|B9T3V3_RICCO	2.5e-18	70.97	Nucleotide binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0114680...	[more]

BLAST of Bhi10G001617 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138683.1	1.9e-22	85.48	PREDICTED: SEC12-like protein 1 [Cucumis sativus] >KGN63031.1 hypothetical prote...	[more]
XP_008456561.1	1.9e-22	85.48	PREDICTED: SEC12-like protein 1 [Cucumis melo]	[more]
XP_022958109.1	2.5e-22	83.87	SEC12-like protein 1 [Cucurbita moschata]	[more]
XP_022990379.1	2.5e-22	83.87	SEC12-like protein 1 [Cucurbita maxima]	[more]
XP_023549412.1	2.5e-22	83.87	SEC12-like protein 1 [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006817	phosphate ion transport
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0009306	protein secretion
biological_process	GO:0003400	regulation of COPII vesicle coating
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0005090	Sar guanyl-nucleotide exchange factor activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001617	Bhi10M001617	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 3..65 e-value: 6.3E-9 score: 37.7
None	No IPR available	PANTHER	PTHR23284	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	coord: 4..65
None	No IPR available	PANTHER	PTHR23284:SF2	SEC12-LIKE PROTEIN 1	coord: 4..65
None	No IPR available	SUPERFAMILY	SSF117289	Nucleoporin domain	coord: 16..62

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001617	Wax gourd	wgowgoB072
Bhi10G001617	Cucumber (Gy14) v1	cgywgoB173
Bhi10G001617	Cucumber (Gy14) v1	cgywgoB754
Bhi10G001617	Cucumber (Gy14) v2	cgybwgoB175
Bhi10G001617	Cucumber (Gy14) v2	cgybwgoB653
Bhi10G001617	Cucurbita maxima (Rimu)	cmawgoB0684
Bhi10G001617	Cucurbita maxima (Rimu)	cmawgoB0745
Bhi10G001617	Cucurbita moschata (Rifu)	cmowgoB0666
Bhi10G001617	Cucurbita moschata (Rifu)	cmowgoB0679
Bhi10G001617	Cucurbita moschata (Rifu)	cmowgoB0736
Bhi10G001617	Cucurbita pepo (Zucchini)	cpewgoB0338
Bhi10G001617	Cucurbita pepo (Zucchini)	cpewgoB0363
Bhi10G001617	Cucurbita pepo (Zucchini)	cpewgoB0958
Bhi10G001617	Wild cucumber (PI 183967)	cpiwgoB181
Bhi10G001617	Wild cucumber (PI 183967)	cpiwgoB693
Bhi10G001617	Cucumber (Chinese Long) v3	cucwgoB187
Bhi10G001617	Cucumber (Chinese Long) v3	cucwgoB706
Bhi10G001617	Cucumber (Chinese Long) v2	cuwgoB182
Bhi10G001617	Cucumber (Chinese Long) v2	cuwgoB681
Bhi10G001617	Bottle gourd (USVL1VR-Ls)	lsiwgoB080
Bhi10G001617	Bottle gourd (USVL1VR-Ls)	lsiwgoB128
Bhi10G001617	Melon (DHL92) v3.6.1	medwgoB133
Bhi10G001617	Melon (DHL92) v3.6.1	medwgoB232
Bhi10G001617	Melon (DHL92) v3.5.1	mewgoB130
Bhi10G001617	Melon (DHL92) v3.5.1	mewgoB231
Bhi10G001617	Watermelon (Charleston Gray)	wcgwgoB167
Bhi10G001617	Watermelon (Charleston Gray)	wcgwgoB286
Bhi10G001617	Watermelon (97103) v2	wgowmbB352
Bhi10G001617	Watermelon (97103) v2	wgowmbB356
Bhi10G001617	Watermelon (97103) v1	wgowmB383
Bhi10G001617	Watermelon (97103) v1	wgowmB406
Bhi10G001617	Silver-seed gourd	carwgoB0572
Bhi10G001617	Silver-seed gourd	carwgoB1037