Bhi10G001579 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001579
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Reverse transcriptase zinc-binding domain
Location	chr10 : 49053451 .. 49053711 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGCTAAGGGCCCATGGAAAGCCTTGTCTTACCTTCAACCTTGTGTGGATCAATATGTTGCTGTTACTTTGGGATCTATATCCTTTTGGAGAGACTCATGGGTGAATAACAGCCCGTTGAGGTTTGCTTTTCCCAATCTATTTGCGTTATCCCTTGCCAAAGATGCTATGGTCTCCGAGCTATGGAACTCGATGGAGGGTGGGTGGAACCTTCATCCCCGTAGACATCTCAATGACCTGGAAACAGAAGAATAG

mRNA sequence

ATGTCTACTGCTAAGGGCCCATGGAAAGCCTTGTCTTACCTTCAACCTTGTGTGGATCAATATGTTGCTGTTACTTTGGGATCTATATCCTTTTGGAGAGACTCATGGGTGAATAACAGCCCGTTGAGGTTTGCTTTTCCCAATCTATTTGCGTTATCCCTTGCCAAAGATGCTATGGTCTCCGAGCTATGGAACTCGATGGAGGGTGGGTGGAACCTTCATCCCCGTAGACATCTCAATGACCTGGAAACAGAAGAATAG

Coding sequence (CDS)

ATGTCTACTGCTAAGGGCCCATGGAAAGCCTTGTCTTACCTTCAACCTTGTGTGGATCAATATGTTGCTGTTACTTTGGGATCTATATCCTTTTGGAGAGACTCATGGGTGAATAACAGCCCGTTGAGGTTTGCTTTTCCCAATCTATTTGCGTTATCCCTTGCCAAAGATGCTATGGTCTCCGAGCTATGGAACTCGATGGAGGGTGGGTGGAACCTTCATCCCCGTAGACATCTCAATGACCTGGAAACAGAAGAATAG

Protein sequence

MSTAKGPWKALSYLQPCVDQYVAVTLGSISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSELWNSMEGGWNLHPRRHLNDLETEE

Homology

[Close]

BLAST of Bhi10G001579 vs. TrEMBL
Match: tr|A5AND8|A5AND8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020389 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-10
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 6   GPWKALSYLQPCVDQYVAVTLGS---ISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
           G WK +      V   ++ ++G+   + FWRD W  +SPL  +FP+LFALS  K+A V++
Sbjct: 881 GLWKGIRMDWELVGTQISFSVGNGRRVRFWRDRWCGDSPLCESFPSLFALSAEKEAWVAD 940

Query: 66  LWNSM----EGGWNLHPRRHLNDLETEE 87
           +W+ +     GGWNL   R LND E EE
Sbjct: 941 VWDPLAKGGRGGWNLCFSRALNDWEVEE 968

[Close]

BLAST of Bhi10G001579 vs. TrEMBL
Match: tr|A5B990|A5B990_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_001415 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-10
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 6   GPWKALSYLQPCVDQYVAVTLGS---ISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
           G WK +      V   +   +G+   +SFWRD W  +SPL  +FP+LFAL++ KDA +++
Sbjct: 66  GLWKGIRMDWKLVSXRLVFIVGNGRRVSFWRDRWCGDSPLCMSFPSLFALTVEKDAWMAD 125

Query: 66  LWNSM-EGGWNLHPRRHLNDLETEE 87
           +W+ + EGGWN    R  ND E EE
Sbjct: 126 IWDPLAEGGWNPCFLRAFNDWEVEE 150

[Close]

BLAST of Bhi10G001579 vs. TrEMBL
Match: tr|A5BEE8|A5BEE8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032536 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 6   GPWKALSYLQPCVDQYVAVTLG---SISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
           G WKA+S +   V       +G   ++SFW+D W  N+PL   FP+LFAL+ +K+A ++E
Sbjct: 213 GLWKAISKMGQLVTPLFGFVVGNGKNVSFWKDKWCGNTPLCEIFPSLFALATSKEAWINE 272

Query: 66  LWNS---MEGGWNLHPRRHLNDLETEE 87
           +W +     G W  H  R  ND E EE
Sbjct: 273 VWTAEGERRGSWTPHFNRPFNDWEMEE 299

[Close]

BLAST of Bhi10G001579 vs. TrEMBL
Match: tr|A5B650|A5B650_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031153 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 8   WKALSYLQPCVDQYVAVTLG---SISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSELW 67
           WKA+     CV+  +A  +G    + FW+D W  + PL  +FP+LF++SLAKDA VS++W
Sbjct: 264 WKAIRKEWLCVNSSLAYRMGCGRRVRFWKDKWCGDEPLCESFPSLFSISLAKDAWVSDVW 323

Query: 68  --NSMEGGWNLHPRRHLNDLETE 86
             N++E GW     R  ND E E
Sbjct: 324 SPNNVEDGWTPLFSRAFNDWEIE 346

[Close]

BLAST of Bhi10G001579 vs. TrEMBL
Match: tr|A5AJ59|A5AJ59_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031405 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 6    GPWKA---LSYLQPCVDQYVAVTLGSISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
            G WK    L  L  C   ++   +  I FW+D W  N PL  +FP+LF LS +KDA V E
Sbjct: 1172 GLWKTERKLWDLVXCKLSFLVGNVKMIKFWKDKWCRNEPLNVSFPSLFVLSNSKDAWVVE 1231

Query: 66   LW--NSMEGGWNLHPRRHLNDLE 84
            LW  +S  GGWN +  R LND E
Sbjct: 1232 LWQHSSERGGWNPNFPRSLNDWE 1254

[Close]

BLAST of Bhi10G001579 vs. NCBI nr
Match: CAN60433.1 (hypothetical protein VITISV_020389 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 6   GPWKALSYLQPCVDQYVAVTLGS---ISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
           G WK +      V   ++ ++G+   + FWRD W  +SPL  +FP+LFALS  K+A V++
Sbjct: 881 GLWKGIRMDWELVGTQISFSVGNGRRVRFWRDRWCGDSPLCESFPSLFALSAEKEAWVAD 940

Query: 66  LWNSM----EGGWNLHPRRHLNDLETEE 87
           +W+ +     GGWNL   R LND E EE
Sbjct: 941 VWDPLAKGGRGGWNLCFSRALNDWEVEE 968

[Close]

BLAST of Bhi10G001579 vs. NCBI nr
Match: CAN69853.1 (hypothetical protein VITISV_001415 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 6   GPWKALSYLQPCVDQYVAVTLGS---ISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
           G WK +      V   +   +G+   +SFWRD W  +SPL  +FP+LFAL++ KDA +++
Sbjct: 66  GLWKGIRMDWKLVSXRLVFIVGNGRRVSFWRDRWCGDSPLCMSFPSLFALTVEKDAWMAD 125

Query: 66  LWNSM-EGGWNLHPRRHLNDLETEE 87
           +W+ + EGGWN    R  ND E EE
Sbjct: 126 IWDPLAEGGWNPCFLRAFNDWEVEE 150

[Close]

BLAST of Bhi10G001579 vs. NCBI nr
Match: CAN81066.1 (hypothetical protein VITISV_032536 [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 6   GPWKALSYLQPCVDQYVAVTLG---SISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
           G WKA+S +   V       +G   ++SFW+D W  N+PL   FP+LFAL+ +K+A ++E
Sbjct: 213 GLWKAISKMGQLVTPLFGFVVGNGKNVSFWKDKWCGNTPLCEIFPSLFALATSKEAWINE 272

Query: 66  LWNS---MEGGWNLHPRRHLNDLETEE 87
           +W +     G W  H  R  ND E EE
Sbjct: 273 VWTAEGERRGSWTPHFNRPFNDWEMEE 299

[Close]

BLAST of Bhi10G001579 vs. NCBI nr
Match: CAN63188.1 (hypothetical protein VITISV_031153 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 8   WKALSYLQPCVDQYVAVTLG---SISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSELW 67
           WKA+     CV+  +A  +G    + FW+D W  + PL  +FP+LF++SLAKDA VS++W
Sbjct: 264 WKAIRKEWLCVNSSLAYRMGCGRRVRFWKDKWCGDEPLCESFPSLFSISLAKDAWVSDVW 323

Query: 68  --NSMEGGWNLHPRRHLNDLETE 86
             N++E GW     R  ND E E
Sbjct: 324 SPNNVEDGWTPLFSRAFNDWEIE 346

[Close]

BLAST of Bhi10G001579 vs. NCBI nr
Match: CAN75725.1 (hypothetical protein VITISV_031405 [Vitis vinifera])

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 6    GPWKA---LSYLQPCVDQYVAVTLGSISFWRDSWVNNSPLRFAFPNLFALSLAKDAMVSE 65
            G WK    L  L  C   ++   +  I FW+D W  N PL  +FP+LF LS +KDA V E
Sbjct: 1172 GLWKTERKLWDLVXCKLSFLVGNVKMIKFWKDKWCRNEPLNVSFPSLFVLSNSKDAWVVE 1231

Query: 66   LW--NSMEGGWNLHPRRHLNDLE 84
            LW  +S  GGWN +  R LND E
Sbjct: 1232 LWQHSSERGGWNPNFPRSLNDWE 1254

The following BLAST results are available for this feature:

BLAST of Bhi10G001579 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001579 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001579 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5AND8\|A5AND8_VITVI	9.5e-10	40.91	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020389 PE=4 SV=1	[more]
tr\|A5B990\|A5B990_VITVI	9.5e-10	41.18	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_001415 PE=4 SV=1	[more]
tr\|A5BEE8\|A5BEE8_VITVI	1.2e-09	39.08	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032536 PE=4 SV=1	[more]
tr\|A5B650\|A5B650_VITVI	1.6e-09	42.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031153 PE=4 SV=1	[more]
tr\|A5AJ59\|A5AJ59_VITVI	2.8e-09	44.58	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031405 PE=4 SV=1	[more]

BLAST of Bhi10G001579 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN60433.1	1.4e-09	40.91	hypothetical protein VITISV_020389 [Vitis vinifera]	[more]
CAN69853.1	1.4e-09	41.18	hypothetical protein VITISV_001415 [Vitis vinifera]	[more]
CAN81066.1	1.9e-09	39.08	hypothetical protein VITISV_032536 [Vitis vinifera]	[more]
CAN63188.1	2.5e-09	42.17	hypothetical protein VITISV_031153 [Vitis vinifera]	[more]
CAN75725.1	4.2e-09	44.58	hypothetical protein VITISV_031405 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001579	Bhi10M001579	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001579	Wax gourd	wgowgoB072
Bhi10G001579	Cucumber (Gy14) v1	cgywgoB173
Bhi10G001579	Cucumber (Gy14) v1	cgywgoB754
Bhi10G001579	Cucumber (Gy14) v2	cgybwgoB175
Bhi10G001579	Cucumber (Gy14) v2	cgybwgoB653
Bhi10G001579	Cucurbita maxima (Rimu)	cmawgoB0684
Bhi10G001579	Cucurbita maxima (Rimu)	cmawgoB0745
Bhi10G001579	Cucurbita moschata (Rifu)	cmowgoB0679
Bhi10G001579	Cucurbita moschata (Rifu)	cmowgoB0736
Bhi10G001579	Cucurbita pepo (Zucchini)	cpewgoB0338
Bhi10G001579	Cucurbita pepo (Zucchini)	cpewgoB0363
Bhi10G001579	Cucurbita pepo (Zucchini)	cpewgoB0958
Bhi10G001579	Wild cucumber (PI 183967)	cpiwgoB181
Bhi10G001579	Wild cucumber (PI 183967)	cpiwgoB693
Bhi10G001579	Cucumber (Chinese Long) v3	cucwgoB187
Bhi10G001579	Cucumber (Chinese Long) v3	cucwgoB706
Bhi10G001579	Cucumber (Chinese Long) v2	cuwgoB182
Bhi10G001579	Cucumber (Chinese Long) v2	cuwgoB681
Bhi10G001579	Bottle gourd (USVL1VR-Ls)	lsiwgoB080
Bhi10G001579	Bottle gourd (USVL1VR-Ls)	lsiwgoB128
Bhi10G001579	Melon (DHL92) v3.6.1	medwgoB133
Bhi10G001579	Melon (DHL92) v3.6.1	medwgoB232
Bhi10G001579	Melon (DHL92) v3.5.1	mewgoB130
Bhi10G001579	Melon (DHL92) v3.5.1	mewgoB231
Bhi10G001579	Watermelon (Charleston Gray)	wcgwgoB167
Bhi10G001579	Watermelon (Charleston Gray)	wcgwgoB286
Bhi10G001579	Watermelon (97103) v2	wgowmbB352
Bhi10G001579	Watermelon (97103) v2	wgowmbB356
Bhi10G001579	Watermelon (97103) v1	wgowmB383
Bhi10G001579	Watermelon (97103) v1	wgowmB406
Bhi10G001579	Silver-seed gourd	carwgoB0125
Bhi10G001579	Silver-seed gourd	carwgoB0389
Bhi10G001579	Silver-seed gourd	carwgoB0401