Bhi10G001263 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001263
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Disease resistance protein
Location	chr10 : 39539226 .. 39539438 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGCACTTGCAAGACCGGAGGTCAAAAAAGTTGGTGTATATGGTATGGGAGGTGTTGGAAAAACTTATTTGCTGAATGAAGTCAAGAAATTGGTGTTGGAAGAAAGATTGTTTGATACAGTGATTGATGTGACCATAGGTCAATCTAATGGTGTAATGGAAATGCAACAACAAATTGGAGATATCATAAATAAAGTCTTGCCAACGAGTAAA

mRNA sequence

GATGCACTTGCAAGACCGGAGGTCAAAAAAGTTGGTGTATATGGTATGGGAGGTGTTGGAAAAACTTATTTGCTGAATGAAGTCAAGAAATTGGTGTTGGAAGAAAGATTGTTTGATACAGTGATTGATGTGACCATAGGTCAATCTAATGGTGTAATGGAAATGCAACAACAAATTGGAGATATCATAAATAAAGTCTTGCCAACGAGTAAA

Coding sequence (CDS)

GATGCACTTGCAAGACCGGAGGTCAAAAAAGTTGGTGTATATGGTATGGGAGGTGTTGGAAAAACTTATTTGCTGAATGAAGTCAAGAAATTGGTGTTGGAAGAAAGATTGTTTGATACAGTGATTGATGTGACCATAGGTCAATCTAATGGTGTAATGGAAATGCAACAACAAATTGGAGATATCATAAATAAAGTCTTGCCAACGAGTAAA

Protein sequence

DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIGDIINKVLPTSK

Homology

[Close]

BLAST of Bhi10G001263 vs. TAIR10
Match: AT4G27190.1 (NB-ARC domain-containing disease resistance protein)

HSP 1 Score: 43.1 bits (100), Expect = 8.2e-05
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEE---RLFDTVIDVTIGQSNGVMEMQQ 60
           D L   + +K+GV+GMGGVGKT L+  +   + EE   + F  VI V + +     E+Q+
Sbjct: 157 DGLTSEKAQKIGVWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQK 216

Query: 61  QIGD 62
           QI +
Sbjct: 217 QIAE 220

[Close]

BLAST of Bhi10G001263 vs. TAIR10
Match: AT5G43730.1 (Disease resistance protein (CC-NBS-LRR class) family)

HSP 1 Score: 43.1 bits (100), Expect = 8.2e-05
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEV-KKLVLEERLFDTVIDVTIGQSNGVMEMQQQI 60
           ++L   E++ +G+YGMGG+GKT LL  +  K V  E  FD VI V + +   +  +Q QI
Sbjct: 165 ESLIDDEIRTLGLYGMGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQI 224

[Close]

BLAST of Bhi10G001263 vs. TAIR10
Match: AT1G12210.1 (RPS5-like 1)

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEV-KKLVLEERLFDTVIDVTIGQSNGVMEMQQQI 60
           + L   +V  VG+YGMGGVGKT LL ++  K       FD VI V + ++  V ++Q+ I
Sbjct: 169 NCLMEDKVWIVGLYGMGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSI 228

Query: 61  GDIINKV 67
           G+ +  V
Sbjct: 229 GEKLGLV 235

[Close]

BLAST of Bhi10G001263 vs. TAIR10
Match: AT1G12220.1 (Disease resistance protein (CC-NBS-LRR class) family)

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 11  VGVYGMGGVGKTYLLNEV-KKLVLEERLFDTVIDVTIGQSNGVMEMQQQIGD 62
           +G+YGMGGVGKT LL ++  K    +  FD VI V + +S+ V ++Q+ I +
Sbjct: 179 LGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAE 230

[Close]

BLAST of Bhi10G001263 vs. TAIR10
Match: AT4G27220.1 (NB-ARC domain-containing disease resistance protein)

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLE---ERLFDTVIDVTIGQSNGVMEMQQ 60
           D L +  V+K+GV+GMGGVGKT L+  +   +L+    + F  VI VT+ +   +  +Q 
Sbjct: 127 DCLKKKNVQKIGVWGMGGVGKTTLVRTLNNDLLKYAATQQFALVIWVTVSKDFDLKRVQM 186

Query: 61  QIGDIINK 66
            I   + K
Sbjct: 187 DIAKRLGK 194

[Close]

BLAST of Bhi10G001263 vs. TrEMBL
Match: tr|A0A0A0K5R3|A0A0A0K5R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239020 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIG 60
           DALA+PEV+KVG+YGMGGVGKTYLL EVKKLVLEE+LFD VIDVT+GQSN VM MQQQIG
Sbjct: 163 DALAKPEVRKVGIYGMGGVGKTYLLKEVKKLVLEEKLFDLVIDVTVGQSNDVMNMQQQIG 222

Query: 61  DIINKVLPTSK 72
           D +NK LP SK
Sbjct: 223 DFLNKELPKSK 233

[Close]

BLAST of Bhi10G001263 vs. TrEMBL
Match: tr|A0A1S3CHN4|A0A1S3CHN4_CUCME (disease resistance protein At4g27190-like OS=Cucumis melo OX=3656 GN=LOC103501064 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVL--EERLFDTVIDVTIGQSNGVMEMQQQ 60
           +ALA+PEVKKVGVYGM GVGKTYLLNEVKKLVL  E+RLFD  IDV +G+ N V E+Q+Q
Sbjct: 153 NALAKPEVKKVGVYGMAGVGKTYLLNEVKKLVLKGEDRLFDRAIDVRVGRFNDVTEIQEQ 212

Query: 61  IGDIINKVLPTSK 72
           IGD +N  LP SK
Sbjct: 213 IGDQLNIELPKSK 225

[Close]

BLAST of Bhi10G001263 vs. TrEMBL
Match: tr|A0A0A0LTN4|A0A0A0LTN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVL--EERLFDTVIDVTIGQSNGVMEMQQQ 60
           +AL++PEV K+GVYGM GVGKTY LNEVKKLVL  E+RLFD VIDV +G+ N V ++Q+Q
Sbjct: 153 NALSKPEVNKIGVYGMAGVGKTYFLNEVKKLVLKGEDRLFDRVIDVRVGRFNDVTDIQEQ 212

Query: 61  IGDIINKVLPTSK 72
           IGD +N  LP SK
Sbjct: 213 IGDQLNVELPKSK 225

[Close]

BLAST of Bhi10G001263 vs. TrEMBL
Match: tr|A0A0A0LT62|A0A0A0LT62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-13
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIG 60
           +ALA P V  VGV GMGGVGKT LLNEVKKLVLE+ LFD VI V +G+S  V  +Q+QI 
Sbjct: 234 EALANPNVDTVGVCGMGGVGKTALLNEVKKLVLEKNLFDRVIQVEVGESKSVFNIQEQIK 293

Query: 61  DIINKVL 68
           D +N  L
Sbjct: 294 DELNMEL 300

[Close]

BLAST of Bhi10G001263 vs. TrEMBL
Match: tr|A0A0A0KUU3|A0A0A0KUU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650160 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.9e-10
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIG 60
           DAL    V KVGVYGMGGV KT LL +V  LV+EE+LFD VI V +GQ+ GV  +Q QIG
Sbjct: 171 DALVDCNVNKVGVYGMGGVEKTTLLKQVTPLVMEEKLFDHVIIVNVGQTLGVEGIQAQIG 230

Query: 61  D 62
           D
Sbjct: 231 D 231

[Close]

BLAST of Bhi10G001263 vs. NCBI nr
Match: KGN44289.1 (hypothetical protein Csa_7G239020 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-24
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIG 60
           DALA+PEV+KVG+YGMGGVGKTYLL EVKKLVLEE+LFD VIDVT+GQSN VM MQQQIG
Sbjct: 163 DALAKPEVRKVGIYGMGGVGKTYLLKEVKKLVLEEKLFDLVIDVTVGQSNDVMNMQQQIG 222

Query: 61  DIINKVLPTSK 72
           D +NK LP SK
Sbjct: 223 DFLNKELPKSK 233

[Close]

BLAST of Bhi10G001263 vs. NCBI nr
Match: XP_011659043.1 (PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-24
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   DALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIG 60
           DALA+PEV+KVG+YGMGGVGKTYLL EVKKLVLEE+LFD VIDVT+GQSN VM MQQQIG
Sbjct: 163 DALAKPEVRKVGIYGMGGVGKTYLLKEVKKLVLEEKLFDLVIDVTVGQSNDVMNMQQQIG 222

Query: 61  DIINKVLPTSK 72
           D +NK LP SK
Sbjct: 223 DFLNKELPKSK 233

[Close]

BLAST of Bhi10G001263 vs. NCBI nr
Match: XP_022944435.1 (probable disease resistance protein At4g27220 isoform X3 [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 7.4e-20
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 2   ALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIGD 61
           AL + EV +VGVYGMGGVGKTYLLNEVKK+VLEE++FD VI+V +GQSNGV+++Q+QIGD
Sbjct: 160 ALQKAEVSRVGVYGMGGVGKTYLLNEVKKMVLEEKVFDRVIEVCVGQSNGVIQIQEQIGD 219

Query: 62  IINKVLPTSK 72
           ++N  LP SK
Sbjct: 220 VLNVRLPKSK 229

[Close]

BLAST of Bhi10G001263 vs. NCBI nr
Match: XP_022944433.1 (probable disease resistance protein At4g27220 isoform X1 [Cucurbita moschata] >XP_022944434.1 probable disease resistance protein At4g27220 isoform X2 [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 7.4e-20
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 2   ALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIGD 61
           AL + EV +VGVYGMGGVGKTYLLNEVKK+VLEE++FD VI+V +GQSNGV+++Q+QIGD
Sbjct: 160 ALQKAEVSRVGVYGMGGVGKTYLLNEVKKMVLEEKVFDRVIEVCVGQSNGVIQIQEQIGD 219

Query: 62  IINKVLPTSK 72
           ++N  LP SK
Sbjct: 220 VLNVRLPKSK 229

[Close]

BLAST of Bhi10G001263 vs. NCBI nr
Match: XP_022986451.1 (probable disease resistance protein At4g27220 [Cucurbita maxima] >XP_022986452.1 probable disease resistance protein At4g27220 [Cucurbita maxima] >XP_022986453.1 probable disease resistance protein At4g27220 [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 7.4e-20
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 2   ALARPEVKKVGVYGMGGVGKTYLLNEVKKLVLEERLFDTVIDVTIGQSNGVMEMQQQIGD 61
           AL + EV +VGVYGMGGVGKTYLLNEVKK+VLEE++FD VI+V +GQSNGV+++Q+QIGD
Sbjct: 160 ALEKAEVSRVGVYGMGGVGKTYLLNEVKKMVLEEKVFDRVIEVCVGQSNGVIQIQEQIGD 219

Query: 62  IINKVLPTSK 72
           ++N  LP SK
Sbjct: 220 VLNVRLPKSK 229

The following BLAST results are available for this feature:

BLAST of Bhi10G001263 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27190.1	8.2e-05	37.50	NB-ARC domain-containing disease resistance protein	[more]
AT5G43730.1	8.2e-05	40.00	Disease resistance protein (CC-NBS-LRR class) family	[more]
AT1G12210.1	2.4e-04	38.81	RPS5-like 1	[more]
AT1G12220.1	2.4e-04	42.31	Disease resistance protein (CC-NBS-LRR class) family	[more]
AT4G27220.1	2.4e-04	35.29	NB-ARC domain-containing disease resistance protein	[more]

BLAST of Bhi10G001263 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001263 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5R3\|A0A0A0K5R3_CUCSA	1.5e-24	81.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239020 PE=3 SV=1	[more]
tr\|A0A1S3CHN4\|A0A1S3CHN4_CUCME	2.1e-18	71.23	disease resistance protein At4g27190-like OS=Cucumis melo OX=3656 GN=LOC10350106...	[more]
tr\|A0A0A0LTN4\|A0A0A0LTN4_CUCSA	3.9e-17	65.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=3 SV=1	[more]
tr\|A0A0A0LT62\|A0A0A0LT62_CUCSA	7.6e-13	62.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=3 SV=1	[more]
tr\|A0A0A0KUU3\|A0A0A0KUU3_CUCSA	7.9e-10	62.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650160 PE=4 SV=1	[more]

BLAST of Bhi10G001263 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44289.1	2.2e-24	81.69	hypothetical protein Csa_7G239020 [Cucumis sativus]	[more]
XP_011659043.1	2.2e-24	81.69	PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus]	[more]
XP_022944435.1	7.4e-20	70.00	probable disease resistance protein At4g27220 isoform X3 [Cucurbita moschata]	[more]
XP_022944433.1	7.4e-20	70.00	probable disease resistance protein At4g27220 isoform X1 [Cucurbita moschata] >X...	[more]
XP_022986451.1	7.4e-20	70.00	probable disease resistance protein At4g27220 [Cucurbita maxima] >XP_022986452.1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043531	ADP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR002182	NB-ARC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001263	Bhi10M001263	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 1..71 e-value: 8.6E-9 score: 37.0
None	No IPR available	PANTHER	PTHR44061	FAMILY NOT NAMED	coord: 1..63
IPR002182	NB-ARC	PFAM	PF00931	NB-ARC	coord: 6..63 e-value: 6.0E-9 score: 35.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001263	Cucumber (Gy14) v1	cgywgoB534
Bhi10G001263	Cucumber (Gy14) v2	cgybwgoB168
Bhi10G001263	Cucurbita maxima (Rimu)	cmawgoB0696
Bhi10G001263	Cucurbita moschata (Rifu)	cmowgoB0690
Bhi10G001263	Cucurbita pepo (Zucchini)	cpewgoB0358
Bhi10G001263	Wild cucumber (PI 183967)	cpiwgoB171
Bhi10G001263	Cucumber (Chinese Long) v3	cucwgoB180
Bhi10G001263	Cucumber (Chinese Long) v2	cuwgoB174
Bhi10G001263	Cucumber (Chinese Long) v2	cuwgoB187
Bhi10G001263	Bottle gourd (USVL1VR-Ls)	lsiwgoB069
Bhi10G001263	Melon (DHL92) v3.6.1	medwgoB128
Bhi10G001263	Melon (DHL92) v3.6.1	medwgoB139
Bhi10G001263	Melon (DHL92) v3.5.1	mewgoB126
Bhi10G001263	Watermelon (Charleston Gray)	wcgwgoB299
Bhi10G001263	Watermelon (97103) v2	wgowmbB370