Bhi10G001241 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001241
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Disease resistance protein
Location	chr10 : 38674336 .. 38674629 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAAAAAAAATGAAGACTGTAATAGAATTGTTAGAGAAACATTACATTGAGGCTGGTCGTTTAGGACTAGTCGCCAATGAATCTGCACGACCAGACATTGATATCATTGACCAATTTCGAGAGACAATTTCAGAGCTCGATGATTATGAAATTATGGGGAGGGATGTGGAAGTTGAAAGTATAGTTAAACAAGTGGTTGATGCTAGCCATCAAAAAGTTACATGTATCTTGCCCATTGTTGGTATTGGTGGATTGGGAAAAACAACTGTGGCCAAGTTAATTGATTGA

mRNA sequence

ATGGCAAAAAAAAAAATGAAGACTGTAATAGAATTGTTAGAGAAACATTACATTGAGGCTGGTCGTTTAGGACTAGTCGCCAATGAATCTGCACGACCAGACATTGATATCATTGACCAATTTCGAGAGACAATTTCAGAGCTCGATGATTATGAAATTATGGGGAGGGATGTGGAAGTTGAAAGTATAGTTAAACAAGTGGTTGATGCTAGCCATCAAAAAGTTACATGTATCTTGCCCATTGTTGGTATTGGTGGATTGGGAAAAACAACTGTGGCCAAGTTAATTGATTGA

Coding sequence (CDS)

ATGGCAAAAAAAAAAATGAAGACTGTAATAGAATTGTTAGAGAAACATTACATTGAGGCTGGTCGTTTAGGACTAGTCGCCAATGAATCTGCACGACCAGACATTGATATCATTGACCAATTTCGAGAGACAATTTCAGAGCTCGATGATTATGAAATTATGGGGAGGGATGTGGAAGTTGAAAGTATAGTTAAACAAGTGGTTGATGCTAGCCATCAAAAAGTTACATGTATCTTGCCCATTGTTGGTATTGGTGGATTGGGAAAAACAACTGTGGCCAAGTTAATTGATTGA

Protein sequence

MAKKKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESIVKQVVDASHQKVTCILPIVGIGGLGKTTVAKLID

Homology

[Close]

BLAST of Bhi10G001241 vs. TAIR10
Match: AT1G58807.1 (Disease resistance protein (CC-NBS-LRR class) family)

HSP 1 Score: 40.0 bits (92), Expect = 9.5e-04
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 32  RPDIDIIDQFRETISELDDYEIMGRDVEVESIVKQVVDASHQKVTCILPIVGIGGLGKTT 91
           +P  D   + R+  S+ DD + +G +  V+ +V  +VD ++ +V   + I G+GGLGKTT
Sbjct: 142 QPQGDKQREMRQKFSKDDDSDFVGLEANVKKLVGYLVDEANVQV---VSITGMGGLGKTT 201

Query: 92  VAKLI 97
           +AK +
Sbjct: 202 LAKQV 203

[Close]

BLAST of Bhi10G001241 vs. TAIR10
Match: AT1G59124.1 (Disease resistance protein (CC-NBS-LRR class) family)

HSP 1 Score: 40.0 bits (92), Expect = 9.5e-04
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 32  RPDIDIIDQFRETISELDDYEIMGRDVEVESIVKQVVDASHQKVTCILPIVGIGGLGKTT 91
           +P  D   + R+  S+ DD + +G +  V+ +V  +VD ++ +V   + I G+GGLGKTT
Sbjct: 142 QPQGDKQREMRQKFSKDDDSDFVGLEANVKKLVGYLVDEANVQV---VSITGMGGLGKTT 201

Query: 92  VAKLI 97
           +AK +
Sbjct: 202 LAKQV 203

[Close]

BLAST of Bhi10G001241 vs. Swiss-Prot
Match: sp|Q7XBQ9|RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 42  RETISELDDYEIMGRDVEVESIVK----QVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           RET S L + ++ GRD E + IVK     V DA H  V   LPI+G+GGLGKTT+A+++
Sbjct: 140 RETGSVLTEPQVYGRDKEKDEIVKILINNVSDAQHLSV---LPILGMGGLGKTTLAQMV 195

[Close]

BLAST of Bhi10G001241 vs. Swiss-Prot
Match: sp|Q7XA42|RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 42  RETISELDDYEIMGRDVEVESIVKQVVD-ASHQKVTCILPIVGIGGLGKTTVAKLI 97
           RET S L + ++ GRD E + IVK +++ AS  +   +LPI+G+GGLGKTT+++++
Sbjct: 140 RETGSVLTEPQVYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMV 195

[Close]

BLAST of Bhi10G001241 vs. TrEMBL
Match: tr|A0A1S4E3X3|A0A1S4E3X3_CUCME (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501129 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.3e-30
Identity = 68/93 (73.12%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T++ELLEKHY EA  LGLV NE+ARP+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 56  KKMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVESI 115

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 116 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 148

[Close]

BLAST of Bhi10G001241 vs. TrEMBL
Match: tr|Q6E436|Q6E436_CUCME (FOM-2 OS=Cucumis melo OX=3656 GN=Fom-2 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 67/93 (72.04%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T+I LLEKHY+EA  LGLV NE+ RP+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 119 KKMMTLIALLEKHYLEAAPLGLVGNENVRPEIDVISQYRETISELEDHKIVGRDVEVESI 178

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 179 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. TrEMBL
Match: tr|A0A1S3CHQ5|A0A1S3CHQ5_CUCME (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 67/92 (72.83%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 5   KMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESIV 64
           KM T++ELLEKHY EA  LGLV NE+ARP+ID+I Q+RETISEL+D++I+GRDVEVESIV
Sbjct: 120 KMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVESIV 179

Query: 65  KQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           KQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 180 KQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. TrEMBL
Match: tr|A0A1S3C9H9|A0A1S3C9H9_CUCME (putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103498352 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 67/93 (72.04%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T+I LLEKHY+EA  LGLV NE+ RP+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 119 KKMMTLIALLEKHYLEAAPLGLVGNENVRPEIDVISQYRETISELEDHKIVGRDVEVESI 178

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 179 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. TrEMBL
Match: tr|Q2V727|Q2V727_CUCME (R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-28
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T+I LLEKHY+EA  LGLV NE+  P+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 119 KKMMTLIALLEKHYLEAAPLGLVGNENVSPEIDVISQYRETISELEDHKILGRDVEVESI 178

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 179 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. NCBI nr
Match: XP_016902928.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 68/93 (73.12%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T++ELLEKHY EA  LGLV NE+ARP+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 56  KKMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVESI 115

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 116 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 148

[Close]

BLAST of Bhi10G001241 vs. NCBI nr
Match: AAS80152.1 (FOM-2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 67/93 (72.04%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T+I LLEKHY+EA  LGLV NE+ RP+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 119 KKMMTLIALLEKHYLEAAPLGLVGNENVRPEIDVISQYRETISELEDHKIVGRDVEVESI 178

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 179 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. NCBI nr
Match: XP_008459150.1 (PREDICTED: putative disease resistance protein RGA3 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 67/93 (72.04%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T+I LLEKHY+EA  LGLV NE+ RP+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 119 KKMMTLIALLEKHYLEAAPLGLVGNENVRPEIDVISQYRETISELEDHKIVGRDVEVESI 178

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 179 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. NCBI nr
Match: XP_008462780.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 67/92 (72.83%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 5   KMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESIV 64
           KM T++ELLEKHY EA  LGLV NE+ARP+ID+I Q+RETISEL+D++I+GRDVEVESIV
Sbjct: 120 KMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVESIV 179

Query: 65  KQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           KQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 180 KQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

[Close]

BLAST of Bhi10G001241 vs. NCBI nr
Match: ABB91438.1 (R-FOM-2 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-28
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 4   KKMKTVIELLEKHYIEAGRLGLVANESARPDIDIIDQFRETISELDDYEIMGRDVEVESI 63
           KKM T+I LLEKHY+EA  LGLV NE+  P+ID+I Q+RETISEL+D++I+GRDVEVESI
Sbjct: 119 KKMMTLIALLEKHYLEAAPLGLVGNENVSPEIDVISQYRETISELEDHKILGRDVEVESI 178

Query: 64  VKQVVDASHQKVTCILPIVGIGGLGKTTVAKLI 97
           VKQV+DAS+ ++T ILPIVG+GGLGKTT+AKL+
Sbjct: 179 VKQVIDASNNQLTSILPIVGMGGLGKTTLAKLV 211

The following BLAST results are available for this feature:

BLAST of Bhi10G001241 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G58807.1	9.5e-04	35.38	Disease resistance protein (CC-NBS-LRR class) family	[more]
AT1G59124.1	9.5e-04	35.38	Disease resistance protein (CC-NBS-LRR class) family	[more]

BLAST of Bhi10G001241 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XBQ9\|RGA2_SOLBU	1.1e-04	49.15	Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 ...	[more]
sp\|Q7XA42\|RGA1_SOLBU	1.4e-04	44.64	Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=R...	[more]

BLAST of Bhi10G001241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3X3\|A0A1S4E3X3_CUCME	9.3e-30	73.12	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501129 PE=...	[more]
tr\|Q6E436\|Q6E436_CUCME	2.7e-29	72.04	FOM-2 OS=Cucumis melo OX=3656 GN=Fom-2 PE=3 SV=1	[more]
tr\|A0A1S3CHQ5\|A0A1S3CHQ5_CUCME	2.7e-29	72.83	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=...	[more]
tr\|A0A1S3C9H9\|A0A1S3C9H9_CUCME	2.7e-29	72.04	putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103498352...	[more]
tr\|Q2V727\|Q2V727_CUCME	1.0e-28	70.97	R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1	[more]

BLAST of Bhi10G001241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902928.1	1.4e-29	73.12	PREDICTED: disease resistance protein RGA2-like [Cucumis melo]	[more]
AAS80152.1	4.1e-29	72.04	FOM-2 [Cucumis melo]	[more]
XP_008459150.1	4.1e-29	72.04	PREDICTED: putative disease resistance protein RGA3 [Cucumis melo]	[more]
XP_008462780.1	4.1e-29	72.83	PREDICTED: disease resistance protein RGA2-like [Cucumis melo]	[more]
ABB91438.1	1.6e-28	70.97	R-FOM-2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001241	Bhi10M001241	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 37..97 e-value: 1.8E-8 score: 36.0
None	No IPR available	PANTHER	PTHR23155:SF879	SUBFAMILY NOT NAMED	coord: 2..96
None	No IPR available	PANTHER	PTHR23155	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 2..96
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 39..96

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001241	Cucumber (Gy14) v1	cgywgoB534
Bhi10G001241	Cucumber (Gy14) v2	cgybwgoB168
Bhi10G001241	Cucurbita maxima (Rimu)	cmawgoB0696
Bhi10G001241	Cucurbita maxima (Rimu)	cmawgoB0759
Bhi10G001241	Cucurbita moschata (Rifu)	cmowgoB0690
Bhi10G001241	Cucurbita moschata (Rifu)	cmowgoB0749
Bhi10G001241	Cucurbita pepo (Zucchini)	cpewgoB0358
Bhi10G001241	Cucurbita pepo (Zucchini)	cpewgoB0950
Bhi10G001241	Wild cucumber (PI 183967)	cpiwgoB171
Bhi10G001241	Cucumber (Chinese Long) v3	cucwgoB180
Bhi10G001241	Cucumber (Chinese Long) v2	cuwgoB174
Bhi10G001241	Cucumber (Chinese Long) v2	cuwgoB187
Bhi10G001241	Bottle gourd (USVL1VR-Ls)	lsiwgoB069
Bhi10G001241	Melon (DHL92) v3.6.1	medwgoB128
Bhi10G001241	Melon (DHL92) v3.6.1	medwgoB139
Bhi10G001241	Melon (DHL92) v3.5.1	mewgoB126
Bhi10G001241	Watermelon (Charleston Gray)	wcgwgoB299
Bhi10G001241	Watermelon (97103) v2	wgowmbB370
Bhi10G001241	Watermelon (97103) v1	wgowmB382
Bhi10G001241	Silver-seed gourd	carwgoB1237