Bhi10G001194 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001194
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	small subunit processome component 20 homolog isoform X4
Location	chr10 : 36929491 .. 36929683 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGACATATTTGGCGTCTCTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTACTCTCTAGTGAGAAGGTTGGGCTTGAAGGATTAAACAGATTTGTGTACCTTGCCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGCTTATTATTTGGATTTTATTTATGG

mRNA sequence

GCGACATATTTGGCGTCTCTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTACTCTCTAGTGAGAAGGTTGGGCTTGAAGGATTAAACAGATTTGTGTACCTTGCCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGCTTATTATTTGGATTTTATTTATGG

Coding sequence (CDS)

GCGACATATTTGGCGTCTCTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTACTCTCTAGTGAGAAGGTTGGGCTTGAAGGATTAAACAGATTTGTGTACCTTGCCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGCTTATTATTTGGATTTTATTTATGG

Protein sequence

DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLDFIY

Homology

[Close]

BLAST of Bhi10G001194 vs. TrEMBL
Match: tr|A0A1S3C531|A0A1S3C531_CUCME (U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo OX=3656 GN=LOC103496945 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-20
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           DIFG+ KE LESIIGATIGSYLKLLSSEK GLE L+R VYLAKRYSSCSQVLVAVA YLD
Sbjct: 558 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 617

Query: 61  FIY 64
           FIY
Sbjct: 618 FIY 620

[Close]

BLAST of Bhi10G001194 vs. TrEMBL
Match: tr|A0A0A0LIC2|A0A0A0LIC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G148430 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-20
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           DIFG+ KE LESIIGATIGSYLKLLSSEK GLE L+R VYLAKRYSSCSQVLVAVA YLD
Sbjct: 555 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 614

Query: 61  FIY 64
           FIY
Sbjct: 615 FIY 617

[Close]

BLAST of Bhi10G001194 vs. TrEMBL
Match: tr|A0A251PWV0|A0A251PWV0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G074200 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           +I G  K   ES+IGAT+ SY KL   +K  L+  +RF++L  R+ SC QVLVAVA +LD
Sbjct: 562 NIAGFPKHTWESLIGATLNSYYKLTRGKKSELDETSRFLHLGNRHKSCPQVLVAVADFLD 621

Query: 61  FIY 64
            +Y
Sbjct: 622 SVY 624

[Close]

BLAST of Bhi10G001194 vs. TrEMBL
Match: tr|M5X743|M5X743_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa015122mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           +I G  K   ES+IGAT+ SY KL   +K  L+  +RF++L  R+ SC QVLVAVA +LD
Sbjct: 554 NIAGFPKHTWESLIGATLNSYYKLTRGKKSELDETSRFLHLGNRHKSCPQVLVAVADFLD 613

Query: 61  FIY 64
            +Y
Sbjct: 614 SVY 616

[Close]

BLAST of Bhi10G001194 vs. TrEMBL
Match: tr|A0A251PWS1|A0A251PWS1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G074200 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           +I G  K   ES+IGAT+ SY KL   +K  L+  +RF++L  R+ SC QVLVAVA +LD
Sbjct: 562 NIAGFPKHTWESLIGATLNSYYKLTRGKKSELDETSRFLHLGNRHKSCPQVLVAVADFLD 621

Query: 61  FIY 64
            +Y
Sbjct: 622 SVY 624

[Close]

BLAST of Bhi10G001194 vs. NCBI nr
Match: XP_008457216.1 (PREDICTED: U3 small nucleolar RNA-associated protein 20 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           DIFG+ KE LESIIGATIGSYLKLLSSEK GLE L+R VYLAKRYSSCSQVLVAVA YLD
Sbjct: 558 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 617

Query: 61  FIY 64
           FIY
Sbjct: 618 FIY 620

[Close]

BLAST of Bhi10G001194 vs. NCBI nr
Match: XP_011649103.1 (PREDICTED: small subunit processome component 20 homolog [Cucumis sativus] >KGN61498.1 hypothetical protein Csa_2G148430 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           DIFG+ KE LESIIGATIGSYLKLLSSEK GLE L+R VYLAKRYSSCSQVLVAVA YLD
Sbjct: 555 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 614

Query: 61  FIY 64
           FIY
Sbjct: 615 FIY 617

[Close]

BLAST of Bhi10G001194 vs. NCBI nr
Match: XP_023513964.1 (small subunit processome component 20 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           DIFGV KEN ES+IGATIGSYLKLLS EK GLE   R VYLAKRYSSCSQVLVAVA YLD
Sbjct: 553 DIFGVPKENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYLD 612

Query: 61  FIY 64
           FI+
Sbjct: 613 FIH 615

[Close]

BLAST of Bhi10G001194 vs. NCBI nr
Match: XP_022964369.1 (small subunit processome component 20 homolog [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           +IFGV KEN ES+IGATIGSYLKLLS EK GLE   R VYLAKRYSSCSQVLVAVA YL+
Sbjct: 553 NIFGVPKENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYLE 612

Query: 61  FIY 64
           FI+
Sbjct: 613 FIH 615

[Close]

BLAST of Bhi10G001194 vs. NCBI nr
Match: XP_022999923.1 (small subunit processome component 20 homolog [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   DIFGVSKENLESIIGATIGSYLKLLSSEKVGLEGLNRFVYLAKRYSSCSQVLVAVAYYLD 60
           +IFGV +EN ES+IGATIGSYLKLLS EK GLE   R VYLAKRYSSCSQVLVAVA YLD
Sbjct: 553 NIFGVPEENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYLD 612

Query: 61  FIY 64
           FI+
Sbjct: 613 FIH 615

The following BLAST results are available for this feature:

BLAST of Bhi10G001194 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001194 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001194 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C531\|A0A1S3C531_CUCME	7.4e-20	87.30	U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A0A0LIC2\|A0A0A0LIC2_CUCSA	7.4e-20	87.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G148430 PE=4 SV=1	[more]
tr\|A0A251PWV0\|A0A251PWV0_PRUPE	2.7e-06	49.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G074200 PE=4 SV=1	[more]
tr\|M5X743\|M5X743_PRUPE	2.7e-06	49.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa015122mg PE=4 SV=1	[more]
tr\|A0A251PWS1\|A0A251PWS1_PRUPE	2.7e-06	49.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G074200 PE=4 SV=1	[more]

BLAST of Bhi10G001194 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457216.1	1.1e-19	87.30	PREDICTED: U3 small nucleolar RNA-associated protein 20 [Cucumis melo]	[more]
XP_011649103.1	1.1e-19	87.30	PREDICTED: small subunit processome component 20 homolog [Cucumis sativus] >KGN6...	[more]
XP_023513964.1	1.4e-17	82.54	small subunit processome component 20 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022964369.1	1.5e-16	79.37	small subunit processome component 20 homolog [Cucurbita moschata]	[more]
XP_022999923.1	1.5e-16	79.37	small subunit processome component 20 homolog [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030686	90S preribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001194	Bhi10M001194	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001194	Cucumber (Gy14) v1	cgywgoB076
Bhi10G001194	Cucumber (Gy14) v2	cgybwgoB168
Bhi10G001194	Cucurbita maxima (Rimu)	cmawgoB0696
Bhi10G001194	Cucurbita maxima (Rimu)	cmawgoB0759
Bhi10G001194	Cucurbita moschata (Rifu)	cmowgoB0690
Bhi10G001194	Cucurbita moschata (Rifu)	cmowgoB0749
Bhi10G001194	Cucurbita pepo (Zucchini)	cpewgoB0358
Bhi10G001194	Cucurbita pepo (Zucchini)	cpewgoB0950
Bhi10G001194	Wild cucumber (PI 183967)	cpiwgoB171
Bhi10G001194	Cucumber (Chinese Long) v3	cucwgoB180
Bhi10G001194	Cucumber (Chinese Long) v2	cuwgoB174
Bhi10G001194	Bottle gourd (USVL1VR-Ls)	lsiwgoB069
Bhi10G001194	Melon (DHL92) v3.6.1	medwgoB128
Bhi10G001194	Melon (DHL92) v3.5.1	mewgoB126
Bhi10G001194	Watermelon (Charleston Gray)	wcgwgoB299
Bhi10G001194	Watermelon (97103) v2	wgowmbB370
Bhi10G001194	Watermelon (97103) v1	wgowmB382
Bhi10G001194	Silver-seed gourd	carwgoB0497
Bhi10G001194	Silver-seed gourd	carwgoB1106