Bhi10G001163 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001163
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	beta-(1,2)-xylosyltransferase
Location	chr10 : 35718847 .. 35719029 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGCCAGAATTTCGTAGCAGTGCTTTTGAGCTTGACGGCGGCGAGGAGAGGGTTCTTACCGATGAAAAGTTTCTTGATCGGTTCGTGCCGAAGGGGAAGTTCAGAGGCACACTATGCGCACATTGTTTGGATCGTTTCAAGTTGTTTCTGGGAGTAATTTTGAATGCAAACAGGTAG

mRNA sequence

ATGGAGTTGCCAGAATTTCGTAGCAGTGCTTTTGAGCTTGACGGCGGCGAGGAGAGGGTTCTTACCGATGAAAAGTTTCTTGATCGGTTCGTGCCGAAGGGGAAGTTCAGAGGCACACTATGCGCACATTGTTTGGATCGTTTCAAGTTGTTTCTGGGAGTAATTTTGAATGCAAACAGGTAG

Coding sequence (CDS)

ATGGAGTTGCCAGAATTTCGTAGCAGTGCTTTTGAGCTTGACGGCGGCGAGGAGAGGGTTCTTACCGATGAAAAGTTTCTTGATCGGTTCGTGCCGAAGGGGAAGTTCAGAGGCACACTATGCGCACATTGTTTGGATCGTTTCAAGTTGTTTCTGGGAGTAATTTTGAATGCAAACAGGTAG

Protein sequence

MELPEFRSSAFELDGGEERVLTDEKFLDRFVPKGKFRGTLCAHCLDRFKLFLGVILNANR

Homology

[Close]

BLAST of Bhi10G001163 vs. TrEMBL
Match: tr|A0A0A0LGK1|A0A0A0LGK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G764550 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MELPEFRSSAFELDGGEERVLTDEKFLDRFVPKGK 36
           MELPEFRS AFELDGGEERVL DEKFLDRFV +G+
Sbjct: 152 MELPEFRSGAFELDGGEERVLADEKFLDRFVQEGE 186

[Close]

BLAST of Bhi10G001163 vs. TrEMBL
Match: tr|A0A1S3CI41|A0A1S3CI41_CUCME (beta-(1,2)-xylosyltransferase OS=Cucumis melo OX=3656 GN=LOC103501220 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MELPEFRSSAFELDGGEERVLTDEKFLDRFVPKGK 36
           MELPEFR+ AFELDGGEERVL DEKFLDRFV +G+
Sbjct: 152 MELPEFRNGAFELDGGEERVLADEKFLDRFVQEGE 186

[Close]

BLAST of Bhi10G001163 vs. NCBI nr
Match: XP_004150255.2 (PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis sativus] >KGN59086.1 hypothetical protein Csa_3G764550 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MELPEFRSSAFELDGGEERVLTDEKFLDRFVPKGK 36
           MELPEFRS AFELDGGEERVL DEKFLDRFV +G+
Sbjct: 152 MELPEFRSGAFELDGGEERVLADEKFLDRFVQEGE 186

[Close]

BLAST of Bhi10G001163 vs. NCBI nr
Match: XP_008462957.1 (PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MELPEFRSSAFELDGGEERVLTDEKFLDRFVPKGK 36
           MELPEFR+ AFELDGGEERVL DEKFLDRFV +G+
Sbjct: 152 MELPEFRNGAFELDGGEERVLADEKFLDRFVQEGE 186

[Close]

BLAST of Bhi10G001163 vs. NCBI nr
Match: XP_022935928.1 (beta-(1,2)-xylosyltransferase [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-04
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 2   ELPEFRSSAFELDGGE-----ERVLTDEKFLDRFVPKGKFRGTLCAHCLDRFKLFLG 54
           ELP+FR+ AFELDGG+     ERVL DEKFL+ FVP G+ +          F++  G
Sbjct: 154 ELPKFRNGAFELDGGDTVASKERVLADEKFLNGFVPAGEIQSHTMRALFGSFRVVSG 210

[Close]

BLAST of Bhi10G001163 vs. NCBI nr
Match: XP_022977172.1 (beta-(1,2)-xylosyltransferase [Cucurbita maxima])

HSP 1 Score: 52.0 bits (123), Expect = 8.2e-04
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 2   ELPEFRSSAFELDGGE-----ERVLTDEKFLDRFVPKGKFRGTLCAHCLDRFKLFLG 54
           ELP+FR  AFELDGG+     ERVL DEKFL+ FVP G+ +          F++  G
Sbjct: 154 ELPKFRDGAFELDGGDTVVGKERVLADEKFLNGFVPAGEIQSHTMRALFGSFRVVSG 210

[Close]

BLAST of Bhi10G001163 vs. NCBI nr
Match: XP_023536582.1 (beta-(1,2)-xylosyltransferase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536584.1 beta-(1,2)-xylosyltransferase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.0 bits (123), Expect = 8.2e-04
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 2   ELPEFRSSAFELDGGE-----ERVLTDEKFLDRFVPKGKFRGTLCAHCLDRFKLFLG 54
           ELP+FR  AFELDGG+     ERVL DEKFL+ FVP G+ +          F++  G
Sbjct: 154 ELPKFRDGAFELDGGDTVAGKERVLADEKFLNGFVPAGEIQSHTMRALFGSFRVVSG 210

The following BLAST results are available for this feature:

BLAST of Bhi10G001163 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001163 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001163 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGK1\|A0A0A0LGK1_CUCSA	6.2e-08	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G764550 PE=4 SV=1	[more]
tr\|A0A1S3CI41\|A0A1S3CI41_CUCME	1.4e-07	82.86	beta-(1,2)-xylosyltransferase OS=Cucumis melo OX=3656 GN=LOC103501220 PE=4 SV=1	[more]

BLAST of Bhi10G001163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150255.2	9.4e-08	85.71	PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis sativus] >KGN59086.1 hypotheti...	[more]
XP_008462957.1	2.1e-07	82.86	PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis melo]	[more]
XP_022935928.1	6.3e-04	47.37	beta-(1,2)-xylosyltransferase [Cucurbita moschata]	[more]
XP_022977172.1	8.2e-04	47.37	beta-(1,2)-xylosyltransferase [Cucurbita maxima]	[more]
XP_023536582.1	8.2e-04	47.37	beta-(1,2)-xylosyltransferase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005797	Golgi medial cisterna
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050513	glycoprotein 2-beta-D-xylosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001163	Bhi10M001163	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001163	Cucumber (Gy14) v1	cgywgoB076
Bhi10G001163	Cucumber (Gy14) v2	cgybwgoB168
Bhi10G001163	Cucurbita maxima (Rimu)	cmawgoB0759
Bhi10G001163	Cucurbita moschata (Rifu)	cmowgoB0749
Bhi10G001163	Cucurbita pepo (Zucchini)	cpewgoB0358
Bhi10G001163	Cucurbita pepo (Zucchini)	cpewgoB0950
Bhi10G001163	Wild cucumber (PI 183967)	cpiwgoB171
Bhi10G001163	Cucumber (Chinese Long) v3	cucwgoB180
Bhi10G001163	Cucumber (Chinese Long) v2	cuwgoB174
Bhi10G001163	Bottle gourd (USVL1VR-Ls)	lsiwgoB069
Bhi10G001163	Melon (DHL92) v3.6.1	medwgoB128
Bhi10G001163	Melon (DHL92) v3.5.1	mewgoB126
Bhi10G001163	Watermelon (Charleston Gray)	wcgwgoB299
Bhi10G001163	Watermelon (97103) v2	wgowmbB370
Bhi10G001163	Watermelon (97103) v1	wgowmB381
Bhi10G001163	Silver-seed gourd	carwgoB0497