Bhi10G000686 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G000686
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Elongation factor Ts, mitochondrial
Location	chr10 : 17910188 .. 17910666 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCATTTTGTGGTTTATGCCCATTCTCTCGTTTTCCTCTGTCATTTTTAGTTGAATTCTTGTGCTAGTATCGGAGCCTCAGTCTAGGCTAACAGCGAGCTATTAAATCTTTGATGATTGTACGGTGACGAATTCGGATCTTATAGCGCCAAGTTTATCGTCTCAATTGATCATACCAGAAGAAGAAATTGCTAAAGTTAAATTGAATAGTAGCAACTACTTGATCTGGAAGCTTCAGGTACTAACGGCATTAGAAGGTTAGGGACTAGAAAACCACATTGAAGAAAATGCAGAACTTCCACTACGATTTGTTGAAATTTCGGATGATTCTACATCGTCTTTAGCTCGAGTGGCAAATCCTGAGTTTCATACTTGGAAACGTCAAGATAAACTGATCATCTCGTGGCTTTTTGGTTTAATTTTCGAAGATATCCTGGGAGAGGTGATCGATTGTTCAATCACCAAGGAGGTTTAG

mRNA sequence

ATGAATTTATCGTCTCAATTGATCATACCAGAAGAAGAAATTGCTAAAGTTAAATTGAATAGTAGCAACTACTTGATCTGGAAGCTTCAGGGACTAGAAAACCACATTGAAGAAAATGCAGAACTTCCACTACGATTTGTTGAAATTTCGGATGATTCTACATCGTCTTTAGCTCGAGTGGCAAATCCTGAGTTTCATACTTGGAAACGTCAAGATAAACTGATCATCTCGTGGCTTTTTGGTTTAATTTTCGAAGATATCCTGGGAGAGGTGATCGATTGTTCAATCACCAAGGAGGTTTAG

Coding sequence (CDS)

ATGAATTTATCGTCTCAATTGATCATACCAGAAGAAGAAATTGCTAAAGTTAAATTGAATAGTAGCAACTACTTGATCTGGAAGCTTCAGGGACTAGAAAACCACATTGAAGAAAATGCAGAACTTCCACTACGATTTGTTGAAATTTCGGATGATTCTACATCGTCTTTAGCTCGAGTGGCAAATCCTGAGTTTCATACTTGGAAACGTCAAGATAAACTGATCATCTCGTGGCTTTTTGGTTTAATTTTCGAAGATATCCTGGGAGAGGTGATCGATTGTTCAATCACCAAGGAGGTTTAG

Protein sequence

MNLSSQLIIPEEEIAKVKLNSSNYLIWKLQGLENHIEENAELPLRFVEISDDSTSSLARVANPEFHTWKRQDKLIISWLFGLIFEDILGEVIDCSITKEV

Homology

[Close]

BLAST of Bhi10G000686 vs. TrEMBL
Match: tr|A0A2P5AAY8|A0A2P5AAY8_PARAD (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_350460 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-09
Identity = 28/84 (33.33%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 17  VKLNSSNYLIWKLQGLENHIEENAELPLRFVEISDDSTSSLARVANPEFHTWKRQDKLII 76
           VKL+ +NY++W+   L +++  +   P   +  +D++   + +VANPEF  W R+D+L++
Sbjct: 41  VKLDRANYMVWRCNNLISYLTGSKPYPPVLITAADEA-GEVTQVANPEFEMWNREDQLLL 100

Query: 77  SWLFGLIFEDILGEVIDCSITKEV 101
           SW+F  +   +L +VI C  ++EV
Sbjct: 101 SWIFSTLSSTVLSQVIRCKTSQEV 123

[Close]

BLAST of Bhi10G000686 vs. TrEMBL
Match: tr|A0A2I4HPV6|A0A2I4HPV6_9ROSI (uncharacterized protein LOC109020223 OS=Juglans regia OX=51240 GN=LOC109020223 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 4   SSQLIIPEEEIAKVKLNSSNYLIWKL--------QGLENHIEENAELPLRFVEISDDSTS 63
           +S  ++P   +  VKLNS NYLIWK         Q L  ++   A LPL+ +  S   + 
Sbjct: 7   TSSFVVPMTNVVTVKLNSENYLIWKAQLVPYFCGQDLFGYLNGTATLPLQTISTSHPDSG 66

Query: 64  SLARVANPEFHTWKRQDKLIISWLFGLIFEDILGEVID 94
           +++ + N  +  W RQD +I+S L   +FE +L +V++
Sbjct: 67  TISEIPNLAYSHWVRQDNIILSTLMSSLFEGVLAQVVN 104

[Close]

BLAST of Bhi10G000686 vs. TrEMBL
Match: tr|A0A2N9J7A0|A0A2N9J7A0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60211 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 4   SSQLIIPEEEIAKVKLNSSNYLIWKL--------QGLENHIEENAELPLRFVEISDDSTS 63
           SSQ + P + +  +KLN  NYL+WK         Q L   ++     P +F+ ++ D++S
Sbjct: 20  SSQSLSPIQHLITIKLNRDNYLLWKAQITPYFKGQHLFGFLDGTQPAPSQFLPLTSDASS 79

Query: 64  SLARVANPEFHTWKRQDKLIISWLFGLIFEDILGEVIDCSITKE 100
                 NPEF TW  QD++I+S L   I E IL  V+ C+ + +
Sbjct: 80  Q--PTLNPEFITWHSQDQMILSALISSISETILAYVVKCATSHD 121

[Close]

BLAST of Bhi10G000686 vs. TrEMBL
Match: tr|Q94K46|Q94K46_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g06950 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 17  VKLNSSNYLIWKL--------QGLENHIEENAELPLRFVEISDDSTSSLARVANPEFHTW 76
           V L + NY++WK         QGL   +  +   P +   +SD   S+ A   NPE++TW
Sbjct: 27  VTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSAS-PNPEYYTW 86

Query: 77  KRQDKLIISWLFGLIFEDILGEVIDCSITKEV 101
            + D+++ SWL G   EDIL  V++C+ + EV
Sbjct: 87  FKTDRVVKSWLLGSFLEDILSVVVNCNTSHEV 117

[Close]

BLAST of Bhi10G000686 vs. TrEMBL
Match: tr|Q9SLL4|Q9SLL4_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g06950 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 17  VKLNSSNYLIWKL--------QGLENHIEENAELPLRFVEISDDSTSSLARVANPEFHTW 76
           V L + NY++WK         QGL   +  +   P +   +SD   S+ A   NPE++TW
Sbjct: 17  VTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSAS-PNPEYYTW 76

Query: 77  KRQDKLIISWLFGLIFEDILGEVIDCSITKEV 101
            + D+++ SWL G   EDIL  V++C+ + EV
Sbjct: 77  FKTDRVVKSWLLGSFLEDILSVVVNCNTSHEV 107

[Close]

BLAST of Bhi10G000686 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-15
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MNLSSQLIIPEEEIAKVKLNSSNYLIWKLQ--------GLENHIEENAELPLRFVEISDD 60
           +N +S ++ P  +I+ +KLN  N+L+W+LQ        GL   I+  A++P  FV+ +D+
Sbjct: 13  VNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQSADE 72

Query: 61  STSSLARVANPEFHTWKRQDKLIISWLFGLIFEDILGEVIDCSITKEV 101
           S+S      NPEF  WKRQDKLI SWL G + E+IL ++++C   +EV
Sbjct: 73  SSS--VPSPNPEFINWKRQDKLITSWLLGSMSEEILSQMLECETAQEV 118

[Close]

BLAST of Bhi10G000686 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14
Identity = 40/105 (38.10%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 4   SSQLIIPEEEIAKVKLNSSNYLIWKLQ--------GLENHIEENAELPLRFVEISDDSTS 63
           +S+ I P  +++ V+LN  N L+WK Q        GLE++I+ N + P +FV+ ++D +S
Sbjct: 18  ASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDESS 77

Query: 64  SLARVANPEFHTWKRQDKLIISWLFGLIFEDILGEVIDCSITKEV 101
           S +   NP +  W +QDKLI +WL G + EDIL +++DC   +E+
Sbjct: 78  SSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREI 122

[Close]

BLAST of Bhi10G000686 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 6   QLIIPEEEIAKVKLNSSNYLIWKLQ--GLENHIEENAELPLRFVEISDDSTSSLARVANP 65
           +L++ + E+   +      ++  +Q  GLE +I+ + E P RF++  D  TSS  +  NP
Sbjct: 3   ELMVEQVEVEADRPEQKFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNP 62

Query: 66  EFHTWKRQDKLIISWLFGLIFEDILGEVIDCSITKEV 101
           E+  W +QDKLI  WL G + E+IL +++DC + KE+
Sbjct: 63  EYFHWIKQDKLISLWLLGSMSEEILSQMLDCRMVKEI 99

[Close]

BLAST of Bhi10G000686 vs. NCBI nr
Match: PON33705.1 (hypothetical protein PanWU01x14_350460, partial [Parasponia andersonii])

HSP 1 Score: 69.7 bits (169), Expect = 6.4e-09
Identity = 28/84 (33.33%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 17  VKLNSSNYLIWKLQGLENHIEENAELPLRFVEISDDSTSSLARVANPEFHTWKRQDKLII 76
           VKL+ +NY++W+   L +++  +   P   +  +D++   + +VANPEF  W R+D+L++
Sbjct: 41  VKLDRANYMVWRCNNLISYLTGSKPYPPVLITAADEA-GEVTQVANPEFEMWNREDQLLL 100

Query: 77  SWLFGLIFEDILGEVIDCSITKEV 101
           SW+F  +   +L +VI C  ++EV
Sbjct: 101 SWIFSTLSSTVLSQVIRCKTSQEV 123

[Close]

BLAST of Bhi10G000686 vs. NCBI nr
Match: XP_018858189.1 (PREDICTED: uncharacterized protein LOC109020223 [Juglans regia])

HSP 1 Score: 66.6 bits (161), Expect = 5.4e-08
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 4   SSQLIIPEEEIAKVKLNSSNYLIWKL--------QGLENHIEENAELPLRFVEISDDSTS 63
           +S  ++P   +  VKLNS NYLIWK         Q L  ++   A LPL+ +  S   + 
Sbjct: 7   TSSFVVPMTNVVTVKLNSENYLIWKAQLVPYFCGQDLFGYLNGTATLPLQTISTSHPDSG 66

Query: 64  SLARVANPEFHTWKRQDKLIISWLFGLIFEDILGEVID 94
           +++ + N  +  W RQD +I+S L   +FE +L +V++
Sbjct: 67  TISEIPNLAYSHWVRQDNIILSTLMSSLFEGVLAQVVN 104

The following BLAST results are available for this feature:

BLAST of Bhi10G000686 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G000686 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G000686 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5AAY8\|A0A2P5AAY8_PARAD	4.2e-09	33.33	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
tr\|A0A2I4HPV6\|A0A2I4HPV6_9ROSI	3.6e-08	32.65	uncharacterized protein LOC109020223 OS=Juglans regia OX=51240 GN=LOC109020223 P...	[more]
tr\|A0A2N9J7A0\|A0A2N9J7A0_FAGSY	3.9e-07	33.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60211 PE=4 SV=1	[more]
tr\|Q94K46\|Q94K46_ARATH	2.6e-06	34.78	Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g069...	[more]
tr\|Q9SLL4\|Q9SLL4_ARATH	2.6e-06	34.78	Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g069...	[more]

BLAST of Bhi10G000686 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159146.1	7.7e-15	40.74	uncharacterized protein LOC111025572 [Momordica charantia]	[more]
XP_022154487.1	2.9e-14	38.10	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
XP_022156747.1	1.7e-09	35.05	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
PON33705.1	6.4e-09	33.33	hypothetical protein PanWU01x14_350460, partial [Parasponia andersonii]	[more]
XP_018858189.1	5.4e-08	32.65	PREDICTED: uncharacterized protein LOC109020223 [Juglans regia]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000686	Bhi10M000686	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G000686	Cucurbita maxima (Rimu)	cmawgoB0580
Bhi10G000686	Cucumber (Gy14) v2	cgybwgoB469
Bhi10G000686	Cucurbita maxima (Rimu)	cmawgoB0692
Bhi10G000686	Cucurbita maxima (Rimu)	cmawgoB0756
Bhi10G000686	Cucurbita pepo (Zucchini)	cpewgoB0079
Bhi10G000686	Cucurbita moschata (Rifu)	cmowgoB0575
Bhi10G000686	Cucurbita moschata (Rifu)	cmowgoB0686
Bhi10G000686	Cucurbita moschata (Rifu)	cmowgoB0746
Bhi10G000686	Cucurbita moschata (Rifu)	cmowgoB0780
Bhi10G000686	Cucurbita pepo (Zucchini)	cpewgoB0353
Bhi10G000686	Cucurbita pepo (Zucchini)	cpewgoB0943
Bhi10G000686	Wild cucumber (PI 183967)	cpiwgoB616
Bhi10G000686	Cucumber (Chinese Long) v2	cuwgoB611
Bhi10G000686	Bottle gourd (USVL1VR-Ls)	lsiwgoB068
Bhi10G000686	Melon (DHL92) v3.6.1	medwgoB115
Bhi10G000686	Melon (DHL92) v3.6.1	medwgoB129
Bhi10G000686	Melon (DHL92) v3.5.1	mewgoB113
Bhi10G000686	Watermelon (Charleston Gray)	wcgwgoB298
Bhi10G000686	Watermelon (97103) v2	wgowmbB368
Bhi10G000686	Watermelon (97103) v2	wgowmbB384
Bhi10G000686	Watermelon (97103) v1	wgowmB369
Bhi10G000686	Watermelon (97103) v1	wgowmB396
Bhi10G000686	Silver-seed gourd	carwgoB0419
Bhi10G000686	Silver-seed gourd	carwgoB1246