Bhi10G000062 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G000062
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr10 : 1991647 .. 1992012 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTATTTACTTTGAAGAATCTCAACAAAAATGTCTTCCAAGCTCTAAATCTAGGGCTTCATCATCCCAGACCTCGCCAAGTTGGTTTCCTCCTCCAAAAGGGTGGTTCAAGCTCAATGTCGATGGTGCTTGGATTTCTAAAGAATCTCACTCTCGGTTAGGTGTTGTAATCAGAGCAGCTTCAAGTCGAGAATTCGATCCCTTTCAAAATCCAACTCTTGTGGAATTGGCAGCTATTCATCGTGGAATTGATTTGGCCCTTAGCCCCAATCTTCATCATTTTCAAATTGAGTCTAATTCCCTCATTGTAGTTAAAGCCCTCGATGGATCTTCTTCATATAGAAATGAAATTGGTGTTTAG

mRNA sequence

ATGGATCCTATTTACTTTGAAGAATCTCAACAAAAATGTCTTCCAAGCTCTAAATCTAGGGCTTCATCATCCCAGACCTCGCCAAGTTGGTTTCCTCCTCCAAAAGGGTGGTTCAAGCTCAATGTCGATGGTGCTTGGATTTCTAAAGAATCTCACTCTCGGTTAGGTGTTGTAATCAGAGCAGCTTCAAGTCGAGAATTCGATCCCTTTCAAAATCCAACTCTTGTGGAATTGGCAGCTATTCATCGTGGAATTGATTTGGCCCTTAGCCCCAATCTTCATCATTTTCAAATTGAGTCTAATTCCCTCATTGTAGTTAAAGCCCTCGATGGATCTTCTTCATATAGAAATGAAATTGGTGTTTAG

Coding sequence (CDS)

ATGGATCCTATTTACTTTGAAGAATCTCAACAAAAATGTCTTCCAAGCTCTAAATCTAGGGCTTCATCATCCCAGACCTCGCCAAGTTGGTTTCCTCCTCCAAAAGGGTGGTTCAAGCTCAATGTCGATGGTGCTTGGATTTCTAAAGAATCTCACTCTCGGTTAGGTGTTGTAATCAGAGCAGCTTCAAGTCGAGAATTCGATCCCTTTCAAAATCCAACTCTTGTGGAATTGGCAGCTATTCATCGTGGAATTGATTTGGCCCTTAGCCCCAATCTTCATCATTTTCAAATTGAGTCTAATTCCCTCATTGTAGTTAAAGCCCTCGATGGATCTTCTTCATATAGAAATGAAATTGGTGTTTAG

Protein sequence

MDPIYFEESQQKCLPSSKSRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVVIRAASSREFDPFQNPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRNEIGV

Homology

[Close]

BLAST of Bhi10G000062 vs. TrEMBL
Match: tr|A0A2P4MTU5|A0A2P4MTU5_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14353 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 19  SRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVV-------IRAASSREFDPFQ 78
           ++A+  + +  W PPP+GWFK NVDGA   + + + +GVV       + AA S++ +  Q
Sbjct: 5   TKAARPKENLKWVPPPQGWFKANVDGAIFKESNSAGIGVVVCDSQGWVLAALSKKVEGVQ 64

Query: 79  NPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGS 113
              ++E  AI R I  A+  + +   IES+SL VVKA+  S
Sbjct: 65  EAEVIETLAIRRAIRFAIETSFNCLIIESDSLGVVKAIQDS 105

[Close]

BLAST of Bhi10G000062 vs. TrEMBL
Match: tr|A0A2I4HMY3|A0A2I4HMY3_9ROSI (uncharacterized protein LOC109019635 OS=Juglans regia OX=51240 GN=LOC109019635 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-08
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 30  WFPPPKGWFKLNVDGAWISKESHSRLGVVIR--------AASSREFDPFQNPTLVELAAI 89
           WFPPP G  KLNVDGA   ++S S +G+++R        +AS  E +   +P  VEL A+
Sbjct: 287 WFPPPVGHLKLNVDGALFHEQSRSGVGMILRDETGKVIFSASKLEHESI-DPMEVELVAL 346

Query: 90  HRGIDLALSPNLHHFQIESNSLIVVKAL 110
            RG+ L L   +H  ++ES++L+VV+ L
Sbjct: 347 LRGLQLCLLLGIHDLEVESDALLVVQEL 373

[Close]

BLAST of Bhi10G000062 vs. TrEMBL
Match: tr|A0A2P4J700|A0A2P4J700_QUESU (Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_38308 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 30  WFPPPKGWFKLNVDGAWISKESHSRLGVVIR-------AASSREFDPFQNPTLVELAAIH 89
           W PPP+GWFK NVDGA     + + +GV +R       AA S + +  Q   ++E  AI 
Sbjct: 172 WVPPPQGWFKANVDGAIFKVTNSAGIGVAVRDCQGWVLAALSEKVEGVQEAEVIETLAIR 231

Query: 90  RGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRNEIG 121
           R I  A+  + +   IES+SL VVKA+  S+     IG
Sbjct: 232 RPIRFAIETSFNCVIIESDSLGVVKAIQDSADSTCHIG 269

[Close]

BLAST of Bhi10G000062 vs. TrEMBL
Match: tr|A0A2P4GLR5|A0A2P4GLR5_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_79748 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-08
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 19  SRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVVIR-------AASSREFDPFQ 78
           ++A+  + +  W PPP+GWFK NVDGA   + + + +GVV+R       AA S + +  Q
Sbjct: 90  TKAARPKDNLKWVPPPQGWFKANVDGAIFKESNSAGIGVVVRDSQGWVLAALSGKLEGVQ 149

Query: 79  NPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRNEIG 121
              ++E  AI + I  A+  + +   IES+S  VVKA+  S+     +G
Sbjct: 150 EAEVIETLAIWQAIRFAIETSFNCVIIESDSRGVVKAIQDSTDSTCHVG 198

[Close]

BLAST of Bhi10G000062 vs. TrEMBL
Match: tr|B9F4A9|B9F4A9_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_05904 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-07
Identity = 39/123 (31.71%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 5   YFEESQQKCLPSSKSRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVVIR---- 64
           Y E   Q C P + SR +   + PSW PPP G F +N D A    E    +GVVIR    
Sbjct: 237 YVEMIMQHCGPGNVSRPAERISLPSWVPPPAGVFLINTDAAVFQAERQMGVGVVIRDQHG 296

Query: 65  ---AASSREFDPFQNPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRN 121
               A++  F    +P   E  AI   + LA     H+  +  + L V++ L+     R+
Sbjct: 297 NCLLAANTRFMGITDPETAEACAIRHALWLAKEEGFHNVIVACDCLSVIQKLNSPGRDRS 356

[Close]

BLAST of Bhi10G000062 vs. NCBI nr
Match: POF20839.1 (hypothetical protein CFP56_14353 [Quercus suber])

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 19  SRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVV-------IRAASSREFDPFQ 78
           ++A+  + +  W PPP+GWFK NVDGA   + + + +GVV       + AA S++ +  Q
Sbjct: 5   TKAARPKENLKWVPPPQGWFKANVDGAIFKESNSAGIGVVVCDSQGWVLAALSKKVEGVQ 64

Query: 79  NPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGS 113
              ++E  AI R I  A+  + +   IES+SL VVKA+  S
Sbjct: 65  EAEVIETLAIRRAIRFAIETSFNCLIIESDSLGVVKAIQDS 105

[Close]

BLAST of Bhi10G000062 vs. NCBI nr
Match: XP_018857521.1 (PREDICTED: uncharacterized protein LOC109019635 [Juglans regia])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 30  WFPPPKGWFKLNVDGAWISKESHSRLGVVIR--------AASSREFDPFQNPTLVELAAI 89
           WFPPP G  KLNVDGA   ++S S +G+++R        +AS  E +   +P  VEL A+
Sbjct: 287 WFPPPVGHLKLNVDGALFHEQSRSGVGMILRDETGKVIFSASKLEHESI-DPMEVELVAL 346

Query: 90  HRGIDLALSPNLHHFQIESNSLIVVKAL 110
            RG+ L L   +H  ++ES++L+VV+ L
Sbjct: 347 LRGLQLCLLLGIHDLEVESDALLVVQEL 373

[Close]

BLAST of Bhi10G000062 vs. NCBI nr
Match: POE76554.1 (putative ribonuclease h protein [Quercus suber])

HSP 1 Score: 66.6 bits (161), Expect = 6.5e-08
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 30  WFPPPKGWFKLNVDGAWISKESHSRLGVVIR-------AASSREFDPFQNPTLVELAAIH 89
           W PPP+GWFK NVDGA     + + +GV +R       AA S + +  Q   ++E  AI 
Sbjct: 172 WVPPPQGWFKANVDGAIFKVTNSAGIGVAVRDCQGWVLAALSEKVEGVQEAEVIETLAIR 231

Query: 90  RGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRNEIG 121
           R I  A+  + +   IES+SL VVKA+  S+     IG
Sbjct: 232 RPIRFAIETSFNCVIIESDSLGVVKAIQDSADSTCHIG 269

[Close]

BLAST of Bhi10G000062 vs. NCBI nr
Match: POE44943.1 (hypothetical protein CFP56_79748 [Quercus suber])

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 19  SRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVVIR-------AASSREFDPFQ 78
           ++A+  + +  W PPP+GWFK NVDGA   + + + +GVV+R       AA S + +  Q
Sbjct: 90  TKAARPKDNLKWVPPPQGWFKANVDGAIFKESNSAGIGVVVRDSQGWVLAALSGKLEGVQ 149

Query: 79  NPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRNEIG 121
              ++E  AI + I  A+  + +   IES+S  VVKA+  S+     +G
Sbjct: 150 EAEVIETLAIWQAIRFAIETSFNCVIIESDSRGVVKAIQDSTDSTCHVG 198

[Close]

BLAST of Bhi10G000062 vs. NCBI nr
Match: EEE56566.1 (hypothetical protein OsJ_05904 [Oryza sativa Japonica Group])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 39/123 (31.71%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 5   YFEESQQKCLPSSKSRASSSQTSPSWFPPPKGWFKLNVDGAWISKESHSRLGVVIR---- 64
           Y E   Q C P + SR +   + PSW PPP G F +N D A    E    +GVVIR    
Sbjct: 237 YVEMIMQHCGPGNVSRPAERISLPSWVPPPAGVFLINTDAAVFQAERQMGVGVVIRDQHG 296

Query: 65  ---AASSREFDPFQNPTLVELAAIHRGIDLALSPNLHHFQIESNSLIVVKALDGSSSYRN 121
               A++  F    +P   E  AI   + LA     H+  +  + L V++ L+     R+
Sbjct: 297 NCLLAANTRFMGITDPETAEACAIRHALWLAKEEGFHNVIVACDCLSVIQKLNSPGRDRS 356

The following BLAST results are available for this feature:

BLAST of Bhi10G000062 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G000062 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G000062 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4MTU5\|A0A2P4MTU5_QUESU	2.5e-08	36.63	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14353 PE=4 SV=1	[more]
tr\|A0A2I4HMY3\|A0A2I4HMY3_9ROSI	3.3e-08	40.91	uncharacterized protein LOC109019635 OS=Juglans regia OX=51240 GN=LOC109019635 P...	[more]
tr\|A0A2P4J700\|A0A2P4J700_QUESU	4.3e-08	38.78	Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_38308 PE=4 SV...	[more]
tr\|A0A2P4GLR5\|A0A2P4GLR5_QUESU	9.6e-08	33.94	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_79748 PE=4 SV=1	[more]
tr\|B9F4A9\|B9F4A9_ORYSJ	8.1e-07	31.71	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_05904 PE...	[more]

BLAST of Bhi10G000062 vs. NCBI nr


Match Name	E-value	Identity	Description
POF20839.1	3.8e-08	36.63	hypothetical protein CFP56_14353 [Quercus suber]	[more]
XP_018857521.1	5.0e-08	40.91	PREDICTED: uncharacterized protein LOC109019635 [Juglans regia]	[more]
POE76554.1	6.5e-08	38.78	putative ribonuclease h protein [Quercus suber]	[more]
POE44943.1	1.5e-07	33.94	hypothetical protein CFP56_79748 [Quercus suber]	[more]
EEE56566.1	1.2e-06	31.71	hypothetical protein OsJ_05904 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000062	Bhi10M000062	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 37..119 e-value: 1.0E-6 score: 30.8
None	No IPR available	PFAM	PF13456	RVT_3	coord: 41..117 e-value: 2.4E-8 score: 33.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..31
None	No IPR available	PANTHER	PTHR33033:SF41	SUBFAMILY NOT NAMED	coord: 10..116
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 10..116
None	No IPR available	CDD	cd06222	RNase_H_like	coord: 40..114 e-value: 3.4418E-10 score: 51.9312
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 36..115

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G000062	Wax gourd	wgowgoB097
Bhi10G000062	Cucumber (Gy14) v1	cgywgoB769
Bhi10G000062	Cucumber (Gy14) v2	cgybwgoB313
Bhi10G000062	Cucumber (Gy14) v2	cgybwgoB579
Bhi10G000062	Cucumber (Gy14) v2	cgybwgoB586
Bhi10G000062	Cucurbita maxima (Rimu)	cmawgoB0747
Bhi10G000062	Cucurbita maxima (Rimu)	cmawgoB1056
Bhi10G000062	Cucurbita moschata (Rifu)	cmowgoB0341
Bhi10G000062	Cucurbita moschata (Rifu)	cmowgoB0738
Bhi10G000062	Cucurbita moschata (Rifu)	cmowgoB1048
Bhi10G000062	Cucurbita pepo (Zucchini)	cpewgoB0594
Bhi10G000062	Cucurbita pepo (Zucchini)	cpewgoB0946
Bhi10G000062	Wild cucumber (PI 183967)	cpiwgoB611
Bhi10G000062	Wild cucumber (PI 183967)	cpiwgoB619
Bhi10G000062	Cucumber (Chinese Long) v3	cucwgoB627
Bhi10G000062	Cucumber (Chinese Long) v3	cucwgoB634
Bhi10G000062	Cucumber (Chinese Long) v2	cuwgoB606
Bhi10G000062	Cucumber (Chinese Long) v2	cuwgoB614
Bhi10G000062	Bottle gourd (USVL1VR-Ls)	lsiwgoB070
Bhi10G000062	Bottle gourd (USVL1VR-Ls)	lsiwgoB161
Bhi10G000062	Melon (DHL92) v3.6.1	medwgoB130
Bhi10G000062	Melon (DHL92) v3.6.1	medwgoB420
Bhi10G000062	Melon (DHL92) v3.6.1	medwgoB635
Bhi10G000062	Melon (DHL92) v3.5.1	mewgoB127
Bhi10G000062	Melon (DHL92) v3.5.1	mewgoB418
Bhi10G000062	Melon (DHL92) v3.5.1	mewgoB629
Bhi10G000062	Watermelon (Charleston Gray)	wcgwgoB119
Bhi10G000062	Watermelon (Charleston Gray)	wcgwgoB300
Bhi10G000062	Watermelon (Charleston Gray)	wcgwgoB382
Bhi10G000062	Watermelon (97103) v2	wgowmbB369
Bhi10G000062	Watermelon (97103) v2	wgowmbB386
Bhi10G000062	Watermelon (97103) v1	wgowmB362
Bhi10G000062	Watermelon (97103) v1	wgowmB377
Bhi10G000062	Watermelon (97103) v1	wgowmB397
Bhi10G000062	Silver-seed gourd	carwgoB0327
Bhi10G000062	Silver-seed gourd	carwgoB1068