Bhi09G002297 (gene) Wax gourd

Overview
NameBhi09G002297
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr9 : 73288869 .. 73289025 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCCTGAAAATAAAGAAGCAAACTATGCCGAAATAGATGAAGAAGAAGAAATGCTTCTAATGTCCTATGAGGAATTGCATGGAGTCAAAAGAGAAGATACATGGTTTCTTGATTCCGGGTGTTCTAATCATATGTGTGGTGATCGATCCATGTTTA

mRNA sequence

TGTCCTGAAAATAAAGAAGCAAACTATGCCGAAATAGATGAAGAAGAAGAAATGCTTCTAATGTCCTATGAGGAATTGCATGGAGTCAAAAGAGAAGATACATGGTTTCTTGATTCCGGGTGTTCTAATCATATGTGTGGTGATCGATCCATGTTTA

Coding sequence (CDS)

TGTCCTGAAAATAAAGAAGCAAACTATGCCGAAATAGATGAAGAAGAAGAAATGCTTCTAATGTCCTATGAGGAATTGCATGGAGTCAAAAGAGAAGATACATGGTTTCTTGATTCCGGGTGTTCTAATCATATGTGTGGTGATCGATCCATGTTTA

Protein sequence

CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF
Homology
[Close]
BLAST of Bhi09G002297 vs. TrEMBL
Match: tr|A0A2K3M2V4|A0A2K3M2V4_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g041175 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CPENKEANYAEIDEE EMLLMSY EL+  KRED WFLDSGCSNHMCGDR++F
Sbjct: 259 CPENKEANYAEIDEETEMLLMSYVELYEAKREDAWFLDSGCSNHMCGDRTVF 310

[Close]
BLAST of Bhi09G002297 vs. TrEMBL
Match: tr|A0A2N9H9R9|A0A2N9H9R9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-17
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   CP-ENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP ENKEANYAE+DEEEEMLLMSY EL+  +RED WFLDSGCSNHMCGDR+MF
Sbjct: 257 CPSENKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNHMCGDRTMF 309

[Close]
BLAST of Bhi09G002297 vs. TrEMBL
Match: tr|A0A2N9G6A8|A0A2N9G6A8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26069 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANYAE+DEEEEMLLMSY EL+  +RED WFLDSGCSNHMCGDR+MF
Sbjct: 259 CPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNHMCGDRTMF 311

[Close]
BLAST of Bhi09G002297 vs. TrEMBL
Match: tr|A0A2N9GII1|A0A2N9GII1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27255 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANYAE+DEEEEMLLMSY EL+  +RED WFLDSGCSNHMCGDR+MF
Sbjct: 206 CPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNHMCGDRTMF 258

[Close]
BLAST of Bhi09G002297 vs. TrEMBL
Match: tr|A5BW94|A5BW94_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020056 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANY E+DE+EEMLLMSY EL+  KRED WFLDSGCS+HMCGDR+MF
Sbjct: 197 CPSGNKEANYLELDEKEEMLLMSYVELYKAKREDAWFLDSGCSSHMCGDRTMF 249

[Close]
BLAST of Bhi09G002297 vs. NCBI nr
Match: XP_011652786.1 (PREDICTED: uncharacterized protein LOC105435094 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1   CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           C ENKEANYAE DEEEEM LMSYEE HGV+REDTW LD GCSNHMCGDRSMF
Sbjct: 193 CSENKEANYAEFDEEEEMFLMSYEEKHGVQREDTWILDFGCSNHMCGDRSMF 244

[Close]
BLAST of Bhi09G002297 vs. NCBI nr
Match: PNX85109.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense])

HSP 1 Score: 98.2 bits (243), Expect = 8.7e-18
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CPENKEANYAEIDEE EMLLMSY EL+  KRED WFLDSGCSNHMCGDR++F
Sbjct: 259 CPENKEANYAEIDEETEMLLMSYVELYEAKREDAWFLDSGCSNHMCGDRTVF 310

[Close]
BLAST of Bhi09G002297 vs. NCBI nr
Match: XP_021827718.1 (uncharacterized protein LOC110768314 [Prunus avium])

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-17
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANYAE+DEEEEM+LMSY EL+  +REDTWFLDSGCSNHMCGDR+MF
Sbjct: 58  CPSGNKEANYAELDEEEEMILMSYVELYKARREDTWFLDSGCSNHMCGDRTMF 110

[Close]
BLAST of Bhi09G002297 vs. NCBI nr
Match: XP_020410736.1 (uncharacterized protein LOC109946662 [Prunus persica])

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-16
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANYAE+DEEEEMLLMSY EL+  +RED WFLDSGCSNHMCGDR+MF
Sbjct: 68  CPSANKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNHMCGDRTMF 120

[Close]
BLAST of Bhi09G002297 vs. NCBI nr
Match: CAN72768.1 (hypothetical protein VITISV_020056 [Vitis vinifera])

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANY E+DE+EEMLLMSY EL+  KRED WFLDSGCS+HMCGDR+MF
Sbjct: 197 CPSGNKEANYLELDEKEEMLLMSYVELYKAKREDAWFLDSGCSSHMCGDRTMF 249

The following BLAST results are available for this feature:
BLAST of Bhi09G002297 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi09G002297 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi09G002297 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3M2V4|A0A2K3M2V4_TRIPR5.7e-1884.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol... [more]
tr|A0A2N9H9R9|A0A2N9H9R9_FAGSY3.7e-1783.02Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1[more]
tr|A0A2N9G6A8|A0A2N9G6A8_FAGSY1.4e-1681.13Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26069 PE=4 SV=1[more]
tr|A0A2N9GII1|A0A2N9GII1_FAGSY1.4e-1681.13Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27255 PE=4 SV=1[more]
tr|A5BW94|A5BW94_VITVI2.7e-1577.36Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020056 PE=4 SV=1[more]
BLAST of Bhi09G002297 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652786.12.3e-1886.54PREDICTED: uncharacterized protein LOC105435094 [Cucumis sativus][more]
PNX85109.18.7e-1884.62retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium ... [more]
XP_021827718.19.6e-1781.13uncharacterized protein LOC110768314 [Prunus avium][more]
XP_020410736.12.1e-1681.13uncharacterized protein LOC109946662 [Prunus persica][more]
CAN72768.14.0e-1577.36hypothetical protein VITISV_020056 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M002297Bhi09M002297mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G002297Cucurbita maxima (Rimu)cmawgoB0038
Bhi09G002297Cucurbita maxima (Rimu)cmawgoB0621
Bhi09G002297Cucurbita moschata (Rifu)cmowgoB0031
Bhi09G002297Cucurbita moschata (Rifu)cmowgoB0615
Bhi09G002297Cucurbita pepo (Zucchini)cpewgoB0713
Bhi09G002297Cucurbita pepo (Zucchini)cpewgoB0998
Bhi09G002297Bottle gourd (USVL1VR-Ls)lsiwgoB397
Bhi09G002297Melon (DHL92) v3.6.1medwgoB608
Bhi09G002297Melon (DHL92) v3.5.1mewgoB602
Bhi09G002297Watermelon (97103) v2wgowmbB558
Bhi09G002297Watermelon (97103) v1wgowmB637
Bhi09G002297Silver-seed gourdcarwgoB0789
Bhi09G002297Silver-seed gourdcarwgoB1225