Bhi09G001897 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G001897
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr9 : 62373840 .. 62374530 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAAAACAATGGGATTGGGATGCAAAACAAATAATAGCAGTACACTTAGATTTGGGTGATGGTGATGATGCAGATGAGGAAGAAAATGTGAGTGAAAATGAACTTGATAATGATAGAGAAGATGGAGTTAGGGAGGAGGATCACATTTTTTGTGATGGTGGGAAAAATGTGAGGAATTTAAGGGAATCTCGTGAGAGGCGTCTTCCTACATGGATGGATGATTATATTAGTGGAGAAGGTCTTTTAGAGGATGAAGCTCATATGGCACTAGGGATATCAACTGATCCATTGTATTTTGAAGATGCTATACAAGATGAAAATTGGAGGCTGGCCATGGACAATGAAATCAGATCCATTGAGAAGAACAAAACGTGGACACTTGTTGAACTACCAATTGGAGCTAAAAAGATTGGAGTAAAGTGGGTCTACAAAAACAAATACAATGAGCACGGAAAAATTGACAAGTACAAGGCTCGATTGGTTGCTAAAGGCTACTCTCAACAATATGGAGTAGACTACACAGAAGTTTTTGCACCAGTGGCAAGGATGGATATAATAAGAATGATTATTGCTCTAGCTGCACAAAAGGATTGGAATATTTTTCAGCTTGATGTTAAGTCAGCTTTTCTCCATGGTGAGTTAACTGAAGATGTTTATATAGAGCAACCAAAAGGGTATCAAAAGAAGG

mRNA sequence

GAAGAAAAACAATGGGATTGGGATGCAAAACAAATAATAGCAGTACACTTAGATTTGGGTGATGGTGATGATGCAGATGAGGAAGAAAATGTGAGTGAAAATGAACTTGATAATGATAGAGAAGATGGAGTTAGGGAGGAGGATCACATTTTTTGTGATGGTGGGAAAAATGTGAGGAATTTAAGGGAATCTCGTGAGAGGCGTCTTCCTACATGGATGGATGATTATATTAGTGGAGAAGGTCTTTTAGAGGATGAAGCTCATATGGCACTAGGGATATCAACTGATCCATTGTATTTTGAAGATGCTATACAAGATGAAAATTGGAGGCTGGCCATGGACAATGAAATCAGATCCATTGAGAAGAACAAAACGTGGACACTTGTTGAACTACCAATTGGAGCTAAAAAGATTGGAGTAAAGTGGGTCTACAAAAACAAATACAATGAGCACGGAAAAATTGACAAGTACAAGGCTCGATTGGTTGCTAAAGGCTACTCTCAACAATATGGAGTAGACTACACAGAAGTTTTTGCACCAGTGGCAAGGATGGATATAATAAGAATGATTATTGCTCTAGCTGCACAAAAGGATTGGAATATTTTTCAGCTTGATGTTAAGTCAGCTTTTCTCCATGGTGAGTTAACTGAAGATGTTTATATAGAGCAACCAAAAGGGTATCAAAAGAAGG

Coding sequence (CDS)

GAAGAAAAACAATGGGATTGGGATGCAAAACAAATAATAGCAGTACACTTAGATTTGGGTGATGGTGATGATGCAGATGAGGAAGAAAATGTGAGTGAAAATGAACTTGATAATGATAGAGAAGATGGAGTTAGGGAGGAGGATCACATTTTTTGTGATGGTGGGAAAAATGTGAGGAATTTAAGGGAATCTCGTGAGAGGCGTCTTCCTACATGGATGGATGATTATATTAGTGGAGAAGGTCTTTTAGAGGATGAAGCTCATATGGCACTAGGGATATCAACTGATCCATTGTATTTTGAAGATGCTATACAAGATGAAAATTGGAGGCTGGCCATGGACAATGAAATCAGATCCATTGAGAAGAACAAAACGTGGACACTTGTTGAACTACCAATTGGAGCTAAAAAGATTGGAGTAAAGTGGGTCTACAAAAACAAATACAATGAGCACGGAAAAATTGACAAGTACAAGGCTCGATTGGTTGCTAAAGGCTACTCTCAACAATATGGAGTAGACTACACAGAAGTTTTTGCACCAGTGGCAAGGATGGATATAATAAGAATGATTATTGCTCTAGCTGCACAAAAGGATTGGAATATTTTTCAGCTTGATGTTAAGTCAGCTTTTCTCCATGGTGAGTTAACTGAAGATGTTTATATAGAGCAACCAAAAGGGTATCAAAAGAAGG

Protein sequence

EEKQWDWDAKQIIAVHLDLGDGDDADEEENVSENELDNDREDGVREEDHIFCDGGKNVRNLRESRERRLPTWMDDYISGEGLLEDEAHMALGISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQKK

Homology

[Close]

BLAST of Bhi09G001897 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-29
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 89   MALGISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIG-AKKIGVKWVYKNK 148
            ++L   ++P     A++DE WR AM +EI +   N TW LV  P      +G +W++  K
Sbjct: 948  VSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKK 1007

Query: 149  YNEHGKIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVK 208
            YN  G +++YKARLVAKGY+Q+ G+DY E F+PV +   IR+++ +A  + W I QLDV 
Sbjct: 1008 YNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVN 1067

Query: 209  SAFLHGELTEDVYIEQPKGYQKK 231
            +AFL G LT+DVY+ QP G+  K
Sbjct: 1068 NAFLQGTLTDDVYMSQPPGFIDK 1090

[Close]

BLAST of Bhi09G001897 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 61/142 (42.96%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 90   ALGISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKI-GVKWVYKNKY 149
            +L  +++P     A++D+ WR AM +EI +   N TW LV  P  +  I G +W++  K+
Sbjct: 932  SLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKF 991

Query: 150  NEHGKIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKS 209
            N  G +++YKARLVAKGY+Q+ G+DY E F+PV +   IR+++ +A  + W I QLDV +
Sbjct: 992  NSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNN 1051

Query: 210  AFLHGELTEDVYIEQPKGYQKK 231
            AFL G LT++VY+ QP G+  K
Sbjct: 1052 AFLQGTLTDEVYMSQPPGFVDK 1073

[Close]

BLAST of Bhi09G001897 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-28
Identity = 59/117 (50.43%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 112 AMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYG 171
           AM  E+ S++KN T+ LVELP G + +  KWV+K K +   K+ +YKARLV KG+ Q+ G
Sbjct: 829 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 172 VDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQ 229
           +D+ E+F+PV +M  IR I++LAA  D  + QLDVK+AFLHG+L E++Y+EQP+G++
Sbjct: 889 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFE 945

[Close]

BLAST of Bhi09G001897 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 9.9e-25
Identity = 54/133 (40.60%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 94   STDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGK 153
            S D + + D     +W  A++ E+ + + N TWT+ + P     +  +WV+  KYNE G 
Sbjct: 893  SFDEIQYRD--DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 952

Query: 154  IDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHG 213
              +YKARLVA+G++Q+Y +DY E FAPVAR+   R I++L  Q +  + Q+DVK+AFL+G
Sbjct: 953  PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNG 1012

Query: 214  ELTEDVYIEQPKG 227
             L E++Y+  P+G
Sbjct: 1013 TLKEEIYMRLPQG 1023

[Close]

BLAST of Bhi09G001897 vs. Swiss-Prot
Match: sp|P92520|M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 93  ISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHG 152
           I  +P     A++D  W  AM  E+ ++ +NKTW LV  P+    +G KWV+K K +  G
Sbjct: 24  IKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDG 83

Query: 153 KIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQ 197
            +D+ KARLVAKG+ Q+ G+ + E ++PV R   IR I+ +A Q
Sbjct: 84  TLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Bhi09G001897 vs. TAIR10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-31
Identity = 60/132 (45.45%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 96  DPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKID 155
           +P  + +A +   W  AMD+EI ++E   TW +  LP   K IG KWVYK KYN  G I+
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 156 KYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGEL 215
           +YKARLVAKGY+QQ G+D+ E F+PV ++  +++I+A++A  ++ + QLD+ +AFL+G+L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 216 TEDVYIEQPKGY 228
            E++Y++ P GY
Sbjct: 205 DEEIYMKLPPGY 216

[Close]

BLAST of Bhi09G001897 vs. TAIR10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-18
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 93  ISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHG 152
           I  +P     A++D  W  AM  E+ ++ +NKTW LV  P+    +G KWV+K K +  G
Sbjct: 24  IKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDG 83

Query: 153 KIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQ 197
            +D+ KARLVAKG+ Q+ G+ + E ++PV R   IR I+ +A Q
Sbjct: 84  TLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Bhi09G001897 vs. TrEMBL
Match: tr|A0A2N9H9R9|A0A2N9H9R9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.9e-81
Identity = 147/194 (75.77%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 37  DNDREDGVREEDHIFCDGGKNVRNLRESRERRLPTWMDDYISGEGLLEDEAHMALGISTD 96
           +N   +GVREE+    +G + VR LR+SRER+ PTWM DY+SGEGL EDE HMAL  STD
Sbjct: 754 ENTDVEGVREEEDGSSEGEERVRELRQSRERQPPTWMGDYVSGEGLFEDEVHMALVESTD 813

Query: 97  PLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDK 156
           PLYFE+A++  NWRLAM++EI+SIEKN+TWTL ELP GAK+IGVKWVYK KYNEHGKIDK
Sbjct: 814 PLYFEEAVKSANWRLAMNSEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDK 873

Query: 157 YKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELT 216
           YKARLVAKGYSQ+YGVDYTEVFAPVARMD +RMIIALAAQK+W IFQLDVKSAFLHGEL+
Sbjct: 874 YKARLVAKGYSQKYGVDYTEVFAPVARMDTVRMIIALAAQKNWTIFQLDVKSAFLHGELS 933

Query: 217 EDVYIEQPKGYQKK 231
           E+VY+EQP+GY+KK
Sbjct: 934 EEVYVEQPRGYEKK 947

[Close]

BLAST of Bhi09G001897 vs. TrEMBL
Match: tr|A0A2N9GWV7|A0A2N9GWV7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31696 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.9e-81
Identity = 147/194 (75.77%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 37  DNDREDGVREEDHIFCDGGKNVRNLRESRERRLPTWMDDYISGEGLLEDEAHMALGISTD 96
           +N   +GVREE+    +G + VR LR+SRER+ PTWM DY+SGEGL EDE HMAL  STD
Sbjct: 657 ENTDVEGVREEEDGSSEGEERVRELRQSRERQPPTWMGDYVSGEGLFEDEVHMALVESTD 716

Query: 97  PLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDK 156
           PLYFE+A++  NWRLAM++EI+SIEKN+TWTL ELP GAK+IGVKWVYK KYNEHGKIDK
Sbjct: 717 PLYFEEAVKSANWRLAMNSEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDK 776

Query: 157 YKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELT 216
           YKARLVAKGYSQ+YGVDYTEVFAPVARMD +RMIIALAAQK+W IFQLDVKSAFLHGEL+
Sbjct: 777 YKARLVAKGYSQKYGVDYTEVFAPVARMDTVRMIIALAAQKNWTIFQLDVKSAFLHGELS 836

Query: 217 EDVYIEQPKGYQKK 231
           E+VY+EQP+GY+KK
Sbjct: 837 EEVYVEQPRGYEKK 850

[Close]

BLAST of Bhi09G001897 vs. TrEMBL
Match: tr|A0A2N9GII1|A0A2N9GII1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27255 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 5.2e-79
Identity = 141/177 (79.66%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 54  GGKNVRNLRESRERRLPTWMDDYISGEGLLEDEAHMALGISTDPLYFEDAIQDENWRLAM 113
           G + VR LR+SRER+ PTWM DY+SGEGL EDE HMAL  STDPLYFE+A++  NWRLAM
Sbjct: 456 GEERVRELRQSRERQPPTWMGDYVSGEGLFEDEVHMALVESTDPLYFEEAVKSANWRLAM 515

Query: 114 DNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYGVD 173
           ++EI+SIEKN+TWTL ELP GAK+IGVKWVYK KYNEHGKIDKYKARLVAKGYSQ+YGVD
Sbjct: 516 NSEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKYGVD 575

Query: 174 YTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQKK 231
           YTEVFAPVARMD +RMIIALAAQK+W IFQLDVKSAFLHGEL+E+VY+EQP+GY+KK
Sbjct: 576 YTEVFAPVARMDTVRMIIALAAQKNWTIFQLDVKSAFLHGELSEEVYVEQPRGYEKK 632

[Close]

BLAST of Bhi09G001897 vs. TrEMBL
Match: tr|A0A2K3MZ63|A0A2K3MZ63_TRIPR (Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76
Identity = 156/238 (65.55%), Postives = 184/238 (77.31%), Query Frame = 0


Query: 1   EEKQWDWDAKQIIAVHLDLGDG---------XXXXXXXXVSENELDNDREDGVREEDHIF 60
           E+KQWDW+ KQ +A  L+  DG         XXXXXXXX           + +REE+H  
Sbjct: 714 EDKQWDWEEKQTVA-DLEWNDGENEERVXXXXXXXXXXXXXXXXXXXXEREVIREEEH-- 773

Query: 61  CDGGKNVRNLRESRERRLPTWMDDYISGEGLLEDEAHMALGISTDPLYFEDAIQDENWRL 120
            D  +    ++E RERR P WM D+ SGEGL EDEAHMAL +S DPL FE+A++ ENWRL
Sbjct: 774 -DSNEGEEIVKEYRERRPPGWMSDFESGEGLSEDEAHMALMVSIDPLCFEEAVKSENWRL 833

Query: 121 AMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYG 180
           AM+ EI+SIEKN+TWTL ELP GAK+IGVKWVYK KYNEHGKIDKYKARLVAKGYSQ++G
Sbjct: 834 AMEKEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKHG 893

Query: 181 VDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQK 230
           VDYTEV+APVARMD IRMIIA+AA K+W IFQLDVKSAFLHG+L EDVY+EQP+GY+K
Sbjct: 894 VDYTEVYAPVARMDTIRMIIAIAAHKNWQIFQLDVKSAFLHGKLDEDVYVEQPRGYEK 947

[Close]

BLAST of Bhi09G001897 vs. TrEMBL
Match: tr|A5B3I2|A5B3I2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004365 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63
Identity = 127/237 (53.59%), Postives = 162/237 (68.35%), Query Frame = 0


Query: 1   EEKQWDWDAKQIIAVHLDLGDGXXXXXXXXVSENE--LDNDREDGVREEDHIFCDGGKNV 60
           E K WDWD     ++  DL  G          ENE   ++D E  +  E+  F       
Sbjct: 679 EHKNWDWDKTYEKSIVCDLEWGDLEEEATMFDENEEGTESDLEADIEAEEDNFSSDSLTE 738

Query: 61  RNLRES---RERRLPTWMDDYISGEGLLED--EAHMALGISTDPLYFEDAIQDENWRLAM 120
            +   S   R RR P WM DY  GEGL E+  EAH+A+  + DP++FEDA++ E W+ AM
Sbjct: 739 DSSPSSTAERIRRPPAWMRDYDIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAM 798

Query: 121 DNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYGVD 180
           D E+ +I KN TW L ELP G KKIGVKW+YK K+NE+G++DKYKARLVAKGY+QQ+GVD
Sbjct: 799 DLELAAINKNGTWELTELPEGGKKIGVKWIYKTKFNENGEVDKYKARLVAKGYTQQHGVD 858

Query: 181 YTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQKK 231
           YTEVFAPVARM+ IR+++ALAAQ+ W I+QLDVKSAFLHGEL E+V++EQP GY +K
Sbjct: 859 YTEVFAPVARMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQK 915

[Close]

BLAST of Bhi09G001897 vs. NCBI nr
Match: PNX96091.1 (retrotransposon-related protein [Trifolium pratense])

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 156/238 (65.55%), Postives = 184/238 (77.31%), Query Frame = 0


Query: 1   EEKQWDWDAKQIIAVHLDLGDG---------XXXXXXXXVSENELDNDREDGVREEDHIF 60
           E+KQWDW+ KQ +A  L+  DG         XXXXXXXX           + +REE+H  
Sbjct: 714 EDKQWDWEEKQTVA-DLEWNDGENEERVXXXXXXXXXXXXXXXXXXXXEREVIREEEH-- 773

Query: 61  CDGGKNVRNLRESRERRLPTWMDDYISGEGLLEDEAHMALGISTDPLYFEDAIQDENWRL 120
            D  +    ++E RERR P WM D+ SGEGL EDEAHMAL +S DPL FE+A++ ENWRL
Sbjct: 774 -DSNEGEEIVKEYRERRPPGWMSDFESGEGLSEDEAHMALMVSIDPLCFEEAVKSENWRL 833

Query: 121 AMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYG 180
           AM+ EI+SIEKN+TWTL ELP GAK+IGVKWVYK KYNEHGKIDKYKARLVAKGYSQ++G
Sbjct: 834 AMEKEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKHG 893

Query: 181 VDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQK 230
           VDYTEV+APVARMD IRMIIA+AA K+W IFQLDVKSAFLHG+L EDVY+EQP+GY+K
Sbjct: 894 VDYTEVYAPVARMDTIRMIIAIAAHKNWQIFQLDVKSAFLHGKLDEDVYVEQPRGYEK 947

[Close]

BLAST of Bhi09G001897 vs. NCBI nr
Match: KZV32403.1 (hypothetical protein F511_03686 [Dorcoceras hygrometricum])

HSP 1 Score: 251.9 bits (642), Expect = 2.1e-63
Identity = 128/205 (62.44%), Postives = 159/205 (77.56%), Query Frame = 0


Query: 33  ENELDNDREDGVREEDHIFCDGGKNVRNLRE----SRERRLPTWMDDYISGEGLL--EDE 92
           ENE  +D E+   E      +G + VR+L E    +RE+R+PTWMDDY+SGEGL   E E
Sbjct: 3   ENEKIDDTEETSNEG---ISEGEEGVRDLAETVTQTREKRMPTWMDDYVSGEGLSGEEVE 62

Query: 93  AHMALG-ISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVELPIGAKKIGVKWVYK 152
           A+M    I+ DP+ FE+A++ E WR ++D+EI SIEKN+TW L++LPIGAKKIGVKW+YK
Sbjct: 63  AYMVQEVIADDPILFEEAVRHEKWRKSIDSEISSIEKNQTWELMDLPIGAKKIGVKWIYK 122

Query: 153 NKYNEHGKIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMIIALAAQKDWNIFQLD 212
            K NE G+IDK+KARLVAKGYSQQ G+D+TEVFAPVARMD +RMI+ALAA + W IFQLD
Sbjct: 123 TKLNERGEIDKHKARLVAKGYSQQQGIDFTEVFAPVARMDTVRMIVALAACRGWEIFQLD 182

Query: 213 VKSAFLHGELTEDVYIEQPKGYQKK 231
           VKS FLHG L+EDVY+EQPKGY  K
Sbjct: 183 VKSVFLHGSLSEDVYVEQPKGYVNK 204

[Close]

BLAST of Bhi09G001897 vs. NCBI nr
Match: CAN65188.1 (hypothetical protein VITISV_004365 [Vitis vinifera])

HSP 1 Score: 251.1 bits (640), Expect = 3.5e-63
Identity = 127/237 (53.59%), Postives = 162/237 (68.35%), Query Frame = 0


Query: 1   EEKQWDWDAKQIIAVHLDLGDGXXXXXXXXVSENE--LDNDREDGVREEDHIFCDGGKNV 60
           E K WDWD     ++  DL  G          ENE   ++D E  +  E+  F       
Sbjct: 679 EHKNWDWDKTYEKSIVCDLEWGDLEEEATMFDENEEGTESDLEADIEAEEDNFSSDSLTE 738

Query: 61  RNLRES---RERRLPTWMDDYISGEGLLED--EAHMALGISTDPLYFEDAIQDENWRLAM 120
            +   S   R RR P WM DY  GEGL E+  EAH+A+  + DP++FEDA++ E W+ AM
Sbjct: 739 DSSPSSTAERIRRPPAWMRDYDIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAM 798

Query: 121 DNEIRSIEKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYGVD 180
           D E+ +I KN TW L ELP G KKIGVKW+YK K+NE+G++DKYKARLVAKGY+QQ+GVD
Sbjct: 799 DLELAAINKNGTWELTELPEGGKKIGVKWIYKTKFNENGEVDKYKARLVAKGYTQQHGVD 858

Query: 181 YTEVFAPVARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQKK 231
           YTEVFAPVARM+ IR+++ALAAQ+ W I+QLDVKSAFLHGEL E+V++EQP GY +K
Sbjct: 859 YTEVFAPVARMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQK 915

[Close]

BLAST of Bhi09G001897 vs. NCBI nr
Match: PNX85069.1 (retrotransposon-related protein [Trifolium pratense])

HSP 1 Score: 245.0 bits (624), Expect = 2.5e-61
Identity = 115/160 (71.88%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 73  MDDYISGEGLL--EDEAHMALGISTDPLYFEDAIQDENWRLAMDNEIRSIEKNKTWTLVE 132
           MDDY SGEGL   EDEA+M L  + DP+YFE+A++ E WR+AMD EI++IEKN+TW L +
Sbjct: 1   MDDYESGEGLSQEEDEANMVLFATADPVYFEEAVKSEKWRVAMDAEIKAIEKNETWVLTD 60

Query: 133 LPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYGVDYTEVFAPVARMDIIRMI 192
           LP  AKKIGVKWVYK K NE+G++DKYKARLVAKGY+QQ+GVDYTEVFAPVARMD +RMI
Sbjct: 61  LPEHAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQQFGVDYTEVFAPVARMDTVRMI 120

Query: 193 IALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQKK 231
           +ALAAQ+ W I+QLDVKSAFLHGEL EDV++EQP+GY+KK
Sbjct: 121 VALAAQRGWIIYQLDVKSAFLHGELNEDVFVEQPRGYEKK 160

[Close]

BLAST of Bhi09G001897 vs. NCBI nr
Match: CAN72600.1 (hypothetical protein VITISV_036712 [Vitis vinifera])

HSP 1 Score: 243.4 bits (620), Expect = 7.4e-61
Identity = 113/170 (66.47%), Postives = 139/170 (81.76%), Query Frame = 0


Query: 63  ESRERRLPTWMDDYISGEGLLED--EAHMALGISTDPLYFEDAIQDENWRLAMDNEIRSI 122
           E + RR P WM+DYISG+GL E   E +MAL  STDP+ +E+ +    WRLAMD+EI SI
Sbjct: 715 ERKVRRAPIWMEDYISGKGLSEGEIELNMALVASTDPINYEEVVMSSKWRLAMDSEINSI 774

Query: 123 EKNKTWTLVELPIGAKKIGVKWVYKNKYNEHGKIDKYKARLVAKGYSQQYGVDYTEVFAP 182
           EKN+TW L +LP GAK IGVKW+YK K NE G++DKYKARLVAKGYSQQ GVD+T+++AP
Sbjct: 775 EKNQTWKLTDLPTGAKTIGVKWIYKTKLNELGEVDKYKARLVAKGYSQQQGVDFTKIYAP 834

Query: 183 VARMDIIRMIIALAAQKDWNIFQLDVKSAFLHGELTEDVYIEQPKGYQKK 231
           VARMD +RMI+AL AQ+ W I+QLDVKSAFL+GEL EDVY++QPKGY+KK
Sbjct: 835 VARMDTVRMIVALTAQRGWTIYQLDVKSAFLNGELNEDVYVDQPKGYEKK 884

The following BLAST results are available for this feature:

BLAST of Bhi09G001897 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94HW2\|POLR1_ARATH	1.0e-29	44.06	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
sp\|Q9ZT94\|POLR2_ARATH	1.1e-28	42.96	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
sp\|P10978\|POLX_TOBAC	1.5e-28	50.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
sp\|P04146\|COPIA_DROME	9.9e-25	40.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
sp\|P92520\|M820_ARATH	5.8e-17	40.38	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Bhi09G001897 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	2.5e-31	45.45	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.2e-18	40.38	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of Bhi09G001897 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9H9R9\|A0A2N9H9R9_FAGSY	1.9e-81	75.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1	[more]
tr\|A0A2N9GWV7\|A0A2N9GWV7_FAGSY	1.9e-81	75.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31696 PE=4 SV=1	[more]
tr\|A0A2N9GII1\|A0A2N9GII1_FAGSY	5.2e-79	79.66	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27255 PE=4 SV=1	[more]
tr\|A0A2K3MZ63\|A0A2K3MZ63_TRIPR	1.4e-76	65.55	Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 P...	[more]
tr\|A5B3I2\|A5B3I2_VITVI	2.3e-63	53.59	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004365 PE=4 SV=1	[more]

BLAST of Bhi09G001897 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX96091.1	2.1e-76	65.55	retrotransposon-related protein [Trifolium pratense]	[more]
KZV32403.1	2.1e-63	62.44	hypothetical protein F511_03686 [Dorcoceras hygrometricum]	[more]
CAN65188.1	3.5e-63	53.59	hypothetical protein VITISV_004365 [Vitis vinifera]	[more]
PNX85069.1	2.5e-61	71.88	retrotransposon-related protein [Trifolium pratense]	[more]
CAN72600.1	7.4e-61	66.47	hypothetical protein VITISV_036712 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001897	Bhi09M001897	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 123..230 e-value: 3.6E-39 score: 134.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..43
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 89..229
None	No IPR available	PANTHER	PTHR11439:SF204	SUBFAMILY NOT NAMED	coord: 89..229
None	No IPR available	SUPERFAMILY	SSF56672	DNA/RNA polymerases	coord: 122..220

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G001897	Cucumber (Gy14) v2	cgybwgoB329
Bhi09G001897	Wild cucumber (PI 183967)	cpiwgoB343
Bhi09G001897	Cucumber (Chinese Long) v3	cucwgoB346
Bhi09G001897	Cucumber (Chinese Long) v2	cuwgoB340
Bhi09G001897	Melon (DHL92) v3.6.1	medwgoB437
Bhi09G001897	Melon (DHL92) v3.5.1	mewgoB435