Bhi09G001896 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G001896
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr9 : 62373630 .. 62373815 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGCTTGGAGTGGGATAAAATCCTCAGTAGATCATTTTCGGGTTTTTGGATGTGTAGCACATGCACATGTTCCAGATGCAAAAAGAACCAAATTAGACAATAAAAGCATTTCTTGTGTGTTATTGGGAGTTAGTGAGGAGTCAAAAGGTTACAGACTATATGATCCGGTCGGTGGAAAGGTTTTT

mRNA sequence

GAGGCTTGGAGTGGGATAAAATCCTCAGTAGATCATTTTCGGGTTTTTGGATGTGTAGCACATGCACATGTTCCAGATGCAAAAAGAACCAAATTAGACAATAAAAGCATTTCTTGTGTGTTATTGGGAGTTAGTGAGGAGTCAAAAGGTTACAGACTATATGATCCGGTCGGTGGAAAGGTTTTT

Coding sequence (CDS)

GAGGCTTGGAGTGGGATAAAATCCTCAGTAGATCATTTTCGGGTTTTTGGATGTGTAGCACATGCACATGTTCCAGATGCAAAAAGAACCAAATTAGACAATAAAAGCATTTCTTGTGTGTTATTGGGAGTTAGTGAGGAGTCAAAAGGTTACAGACTATATGATCCGGTCGGTGGAAAGGTTTTT

Protein sequence

EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGKVF

Homology

[Close]

BLAST of Bhi09G001896 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 3   WSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGKV 62
           W+  + S  H +VFGC A AHVP  +RTKLD+KSI C+ +G  +E  GYRL+DPV  KV
Sbjct: 638 WTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKV 696

[Close]

BLAST of Bhi09G001896 vs. TrEMBL
Match: tr|A0A2K3LT24|A0A2K3LT24_TRIPR (Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g037710 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-24
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
          EAWSG+K SVDHFRVFGC+AHAHVPDA+RTKLDN+S +CVLLGVSEESKGYRL+DPV  K
Sbjct: 25 EAWSGVKPSVDHFRVFGCIAHAHVPDARRTKLDNRSTTCVLLGVSEESKGYRLFDPVAKK 84

Query: 61 V 62
          V
Sbjct: 85 V 85

[Close]

BLAST of Bhi09G001896 vs. TrEMBL
Match: tr|A0A2N9GII1|A0A2N9GII1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27255 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K SVDHFRVFGC+AH HVP+ +RTKLDN+SI+CVLLGVSEESKGYRL+DPV  +
Sbjct: 353 EAWSGVKPSVDHFRVFGCIAHVHVPEERRTKLDNRSITCVLLGVSEESKGYRLFDPVAKR 412

Query: 61  V 62
           V
Sbjct: 413 V 413

[Close]

BLAST of Bhi09G001896 vs. TrEMBL
Match: tr|A0A2N9H9R9|A0A2N9H9R9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K S+DHFRVFGC+AH HVP+ +RTKLDN+SI+CVLLGVSEESKGYRL+DPV  +
Sbjct: 644 EAWSGVKPSIDHFRVFGCIAHVHVPEERRTKLDNRSITCVLLGVSEESKGYRLFDPVAKR 703

Query: 61  V 62
           V
Sbjct: 704 V 704

[Close]

BLAST of Bhi09G001896 vs. TrEMBL
Match: tr|A0A2N9J8J5|A0A2N9J8J5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60817 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K S+DHFRVFGC+AH HVP+  RTKLDN+SI+CVLLGVSEESKGYRL+DPV  +
Sbjct: 538 EAWSGVKPSIDHFRVFGCIAHVHVPEEMRTKLDNRSITCVLLGVSEESKGYRLFDPVAKR 597

Query: 61  V 62
           V
Sbjct: 598 V 598

[Close]

BLAST of Bhi09G001896 vs. TrEMBL
Match: tr|A0A2K3MZ63|A0A2K3MZ63_TRIPR (Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K SV+HFRVFGC+AH HVP+AKRTKLD++SI+CVLLGVSEESKGYR +DPV  K
Sbjct: 644 EAWSGVKPSVNHFRVFGCIAHVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKK 703

Query: 61  V 62
           +
Sbjct: 704 I 704

[Close]

BLAST of Bhi09G001896 vs. NCBI nr
Match: PNX81686.1 (retrotransposon-related protein, partial [Trifolium pratense])

HSP 1 Score: 118.2 bits (295), Expect = 9.7e-24
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
          EAWSG+K SVDHFRVFGC+AHAHVPDA+RTKLDN+S +CVLLGVSEESKGYRL+DPV  K
Sbjct: 25 EAWSGVKPSVDHFRVFGCIAHAHVPDARRTKLDNRSTTCVLLGVSEESKGYRLFDPVAKK 84

Query: 61 V 62
          V
Sbjct: 85 V 85

[Close]

BLAST of Bhi09G001896 vs. NCBI nr
Match: PNX96091.1 (retrotransposon-related protein [Trifolium pratense])

HSP 1 Score: 112.5 bits (280), Expect = 5.3e-22
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K SV+HFRVFGC+AH HVP+AKRTKLD++SI+CVLLGVSEESKGYR +DPV  K
Sbjct: 644 EAWSGVKPSVNHFRVFGCIAHVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKK 703

Query: 61  V 62
           +
Sbjct: 704 I 704

[Close]

BLAST of Bhi09G001896 vs. NCBI nr
Match: CAN74050.1 (hypothetical protein VITISV_040588 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K +V+HFRVFGCVAH HVPDAK+TKLDNKS+ CVLLG S+E KGY+LYDPV  K
Sbjct: 425 EAWSGVKPTVEHFRVFGCVAHVHVPDAKKTKLDNKSLECVLLGFSDELKGYKLYDPVAKK 484

Query: 61  V 62
           V
Sbjct: 485 V 485

[Close]

BLAST of Bhi09G001896 vs. NCBI nr
Match: CAN81156.1 (hypothetical protein VITISV_016610 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG+K SV+HFRVFGC++H HVPD+KRTKLD+KS+SCVLLG SEESK YRLYDPV  +
Sbjct: 360 EAWSGVKPSVEHFRVFGCISHVHVPDSKRTKLDDKSLSCVLLGXSEESKAYRLYDPVSQR 419

Query: 61  V 62
           +
Sbjct: 420 I 420

[Close]

BLAST of Bhi09G001896 vs. NCBI nr
Match: CAN74283.1 (hypothetical protein VITISV_032452 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   EAWSGIKSSVDHFRVFGCVAHAHVPDAKRTKLDNKSISCVLLGVSEESKGYRLYDPVGGK 60
           EAWSG K SVDHFRVFGC++H H+PD+KRTKLD+KS+ CVLLGVSEE K YRLYDPV  K
Sbjct: 595 EAWSGSKPSVDHFRVFGCISHVHIPDSKRTKLDDKSVKCVLLGVSEELKAYRLYDPVSQK 654

Query: 61  V 62
           +
Sbjct: 655 I 655

The following BLAST results are available for this feature:

BLAST of Bhi09G001896 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	2.3e-13	54.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Bhi09G001896 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G001896 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K3LT24\|A0A2K3LT24_TRIPR	6.4e-24	83.61	Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19...	[more]
tr\|A0A2N9GII1\|A0A2N9GII1_FAGSY	1.2e-22	78.69	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27255 PE=4 SV=1	[more]
tr\|A0A2N9H9R9\|A0A2N9H9R9_FAGSY	1.6e-22	77.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1	[more]
tr\|A0A2N9J8J5\|A0A2N9J8J5_FAGSY	3.5e-22	77.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60817 PE=4 SV=1	[more]
tr\|A0A2K3MZ63\|A0A2K3MZ63_TRIPR	3.5e-22	77.05	Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 P...	[more]

BLAST of Bhi09G001896 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX81686.1	9.7e-24	83.61	retrotransposon-related protein, partial [Trifolium pratense]	[more]
PNX96091.1	5.3e-22	77.05	retrotransposon-related protein [Trifolium pratense]	[more]
CAN74050.1	1.2e-21	77.05	hypothetical protein VITISV_040588 [Vitis vinifera]	[more]
CAN81156.1	1.2e-21	75.41	hypothetical protein VITISV_016610 [Vitis vinifera]	[more]
CAN74283.1	2.6e-21	75.41	hypothetical protein VITISV_032452 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001896	Bhi09M001896	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..62
None	No IPR available	PANTHER	PTHR11439:SF204	SUBFAMILY NOT NAMED	coord: 1..62

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G001896	Cucumber (Gy14) v2	cgybwgoB329
Bhi09G001896	Wild cucumber (PI 183967)	cpiwgoB343
Bhi09G001896	Cucumber (Chinese Long) v3	cucwgoB346
Bhi09G001896	Cucumber (Chinese Long) v2	cuwgoB340
Bhi09G001896	Melon (DHL92) v3.6.1	medwgoB437
Bhi09G001896	Melon (DHL92) v3.5.1	mewgoB435