Bhi09G001895 (gene) Wax gourd

Overview
NameBhi09G001895
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr9 : 62370241 .. 62370555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAACTGGGAGTTGGTCGAACCTGGATATGTTGAACCAGCTAGCGAATTGTTGCAAACAGAAGCCCAGCGAAAGAAAAATGATGAGATGAAGATGAAAGACTTGAAAGTAAAGAATTATCTCTTTCAAGACATTGATCGTACAGTTTTAGAAACCATTCTCAAGAAGAACACTTCTAAAGAAATATGGAATGCAATGAAGAAAAAGTTTGAAGGCAATGCAAGGGTCAAGAGGTCTCATCTACAAGCTCTTCGTAGAGACTTTGAAATTCTTGAGATGAAGTCTGGTGAAGGAGTGACAGAATACTTCTCCAGA

mRNA sequence

GAAAACTGGGAGTTGGTCGAACCTGGATATGTTGAACCAGCTAGCGAATTGTTGCAAACAGAAGCCCAGCGAAAGAAAAATGATGAGATGAAGATGAAAGACTTGAAAGTAAAGAATTATCTCTTTCAAGACATTGATCGTACAGTTTTAGAAACCATTCTCAAGAAGAACACTTCTAAAGAAATATGGAATGCAATGAAGAAAAAGTTTGAAGGCAATGCAAGGGTCAAGAGGTCTCATCTACAAGCTCTTCGTAGAGACTTTGAAATTCTTGAGATGAAGTCTGGTGAAGGAGTGACAGAATACTTCTCCAGA

Coding sequence (CDS)

GAAAACTGGGAGTTGGTCGAACCTGGATATGTTGAACCAGCTAGCGAATTGTTGCAAACAGAAGCCCAGCGAAAGAAAAATGATGAGATGAAGATGAAAGACTTGAAAGTAAAGAATTATCTCTTTCAAGACATTGATCGTACAGTTTTAGAAACCATTCTCAAGAAGAACACTTCTAAAGAAATATGGAATGCAATGAAGAAAAAGTTTGAAGGCAATGCAAGGGTCAAGAGGTCTCATCTACAAGCTCTTCGTAGAGACTTTGAAATTCTTGAGATGAAGTCTGGTGAAGGAGTGACAGAATACTTCTCCAGA

Protein sequence

ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSKEIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR
Homology
[Close]
BLAST of Bhi09G001895 vs. TrEMBL
Match: tr|A0A2K3M2V4|A0A2K3M2V4_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g041175 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-42
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WEL+EPGYVEPAS ++ T+AQRKKNDEMK+KDLK KNYLFQ IDRTVLETILKK+TSK
Sbjct: 34  EYWELIEPGYVEPASGVVLTDAQRKKNDEMKLKDLKAKNYLFQAIDRTVLETILKKDTSK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           +IW+AMKKKFEGNARVKRSHLQALRR+FE LEM+SGEGVTEYFSR
Sbjct: 94  DIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTEYFSR 138

[Close]
BLAST of Bhi09G001895 vs. TrEMBL
Match: tr|A0A2N9J8J5|A0A2N9J8J5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60817 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 88/105 (83.81%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WELVEPGY EPASE +QT+AQ+KKNDEMK+KDLKVKNYLFQ IDRTVL+TILKK+T+K
Sbjct: 34  EFWELVEPGYNEPASESVQTDAQQKKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           +IW+AMKKKFEGNARVKRSHLQALRR+FE LEM+SGEGVT+YFSR
Sbjct: 94  DIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTKYFSR 138

[Close]
BLAST of Bhi09G001895 vs. TrEMBL
Match: tr|A0A2N9H9R9|A0A2N9H9R9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 88/105 (83.81%), Postives = 99/105 (94.29%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E W LVE GY+EPASE +QT+AQRKKNDEMK+KDLKVKNYLFQ IDRTVL+TILKK+T+K
Sbjct: 34  EFWGLVESGYIEPASESVQTDAQRKKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           +IW+AMKKKFEGNARVKRSHLQALRR+FE LEM+SGEGVTEYFSR
Sbjct: 94  DIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTEYFSR 138

[Close]
BLAST of Bhi09G001895 vs. TrEMBL
Match: tr|A0A2K3MZ63|A0A2K3MZ63_TRIPR (Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WEL++PG+VEPAS   QTE QRKKNDEMK+KDLK KNYLFQ IDRTVL TILKK+TSK
Sbjct: 34  EYWELIDPGFVEPASGTTQTEVQRKKNDEMKLKDLKAKNYLFQAIDRTVLNTILKKDTSK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           EIW+AMKKK+EGN RVKRSHLQALRR+FEILEM+  EG+TEYFSR
Sbjct: 94  EIWDAMKKKYEGNERVKRSHLQALRREFEILEMREDEGMTEYFSR 138

[Close]
BLAST of Bhi09G001895 vs. TrEMBL
Match: tr|A0A2N9G6A8|A0A2N9G6A8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26069 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E W LVE GY+EPASE +QT+AQRKKNDEMK+KDLKVKNYLFQ IDRTVL+TILKK+T+K
Sbjct: 34  EFWGLVESGYIEPASESVQTDAQRKKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           +IW+AMKKKFEGNARVKRSHLQAL R+FE LEM+  EGVTEYFSR
Sbjct: 94  DIWDAMKKKFEGNARVKRSHLQALHREFETLEMRFDEGVTEYFSR 138

[Close]
BLAST of Bhi09G001895 vs. NCBI nr
Match: PNX85109.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense])

HSP 1 Score: 180.3 bits (456), Expect = 3.5e-42
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WEL+EPGYVEPAS ++ T+AQRKKNDEMK+KDLK KNYLFQ IDRTVLETILKK+TSK
Sbjct: 34  EYWELIEPGYVEPASGVVLTDAQRKKNDEMKLKDLKAKNYLFQAIDRTVLETILKKDTSK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           +IW+AMKKKFEGNARVKRSHLQALRR+FE LEM+SGEGVTEYFSR
Sbjct: 94  DIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTEYFSR 138

[Close]
BLAST of Bhi09G001895 vs. NCBI nr
Match: XP_019416461.1 (PREDICTED: uncharacterized protein LOC109327762 [Lupinus angustifolius])

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WEL+EPGYVEPAS ++ TEAQRKKNDEMK+ DLK KNYLFQ IDRTVL+TILKK+TSK
Sbjct: 86  EYWELIEPGYVEPASGMVLTEAQRKKNDEMKLMDLKTKNYLFQAIDRTVLDTILKKDTSK 145

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           EIW+AMKKKFEGNARVKRSHLQALRR+FE LEM+SGEGVTEYFSR
Sbjct: 146 EIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTEYFSR 190

[Close]
BLAST of Bhi09G001895 vs. NCBI nr
Match: XP_019414640.1 (PREDICTED: uncharacterized protein LOC109326411 [Lupinus angustifolius])

HSP 1 Score: 177.9 bits (450), Expect = 1.7e-41
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WEL+EPGYVEPAS ++ TEAQRKKNDEMK+ DLK KNYLFQ IDRTVL+TILKK+TSK
Sbjct: 75  EYWELIEPGYVEPASGMVLTEAQRKKNDEMKLMDLKTKNYLFQAIDRTVLDTILKKDTSK 134

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           EIW+AMKKKFEGNARVKRSHLQALRR+FE LEM+SGEGVT+YFSR
Sbjct: 135 EIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTKYFSR 179

[Close]
BLAST of Bhi09G001895 vs. NCBI nr
Match: XP_015877784.1 ((R)-mandelonitrile lyase 1-like [Ziziphus jujuba])

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WELVEPGYVEP + LLQT AQ+KKNDEMK+KDLKVKNYLFQ IDRTVL+TIL+K+T+K
Sbjct: 646 EYWELVEPGYVEPITGLLQTGAQQKKNDEMKLKDLKVKNYLFQAIDRTVLDTILEKDTTK 705

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           EIW+A+KKKF+GNARVKRSHLQ LRR+FE LEM+ GEGVTEYFSR
Sbjct: 706 EIWDAIKKKFKGNARVKRSHLQTLRREFETLEMRYGEGVTEYFSR 750

[Close]
BLAST of Bhi09G001895 vs. NCBI nr
Match: PNX96091.1 (retrotransposon-related protein [Trifolium pratense])

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-39
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 1   ENWELVEPGYVEPASELLQTEAQRKKNDEMKMKDLKVKNYLFQDIDRTVLETILKKNTSK 60
           E WEL++PG+VEPAS   QTE QRKKNDEMK+KDLK KNYLFQ IDRTVL TILKK+TSK
Sbjct: 34  EYWELIDPGFVEPASGTTQTEVQRKKNDEMKLKDLKAKNYLFQAIDRTVLNTILKKDTSK 93

Query: 61  EIWNAMKKKFEGNARVKRSHLQALRRDFEILEMKSGEGVTEYFSR 106
           EIW+AMKKK+EGN RVKRSHLQALRR+FEILEM+  EG+TEYFSR
Sbjct: 94  EIWDAMKKKYEGNERVKRSHLQALRREFEILEMREDEGMTEYFSR 138

The following BLAST results are available for this feature:
BLAST of Bhi09G001895 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi09G001895 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi09G001895 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3M2V4|A0A2K3M2V4_TRIPR2.3e-4284.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol... [more]
tr|A0A2N9J8J5|A0A2N9J8J5_FAGSY1.2e-4183.81Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60817 PE=4 SV=1[more]
tr|A0A2N9H9R9|A0A2N9H9R9_FAGSY1.5e-4183.81Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1[more]
tr|A0A2K3MZ63|A0A2K3MZ63_TRIPR1.4e-3980.00Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 P... [more]
tr|A0A2N9G6A8|A0A2N9G6A8_FAGSY1.8e-3980.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26069 PE=4 SV=1[more]
BLAST of Bhi09G001895 vs. NCBI nr
Match NameE-valueIdentityDescription
PNX85109.13.5e-4284.76retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium ... [more]
XP_019416461.16.0e-4284.76PREDICTED: uncharacterized protein LOC109327762 [Lupinus angustifolius][more]
XP_019414640.11.7e-4183.81PREDICTED: uncharacterized protein LOC109326411 [Lupinus angustifolius][more]
XP_015877784.11.6e-3980.95(R)-mandelonitrile lyase 1-like [Ziziphus jujuba][more]
PNX96091.12.1e-3980.00retrotransposon-related protein [Trifolium pratense][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001895Bhi09M001895mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 31..104
e-value: 2.6E-9
score: 36.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G001895Cucumber (Gy14) v2cgybwgoB329
Bhi09G001895Wild cucumber (PI 183967)cpiwgoB343
Bhi09G001895Cucumber (Chinese Long) v3cucwgoB346
Bhi09G001895Cucumber (Chinese Long) v2cuwgoB340
Bhi09G001895Melon (DHL92) v3.6.1medwgoB437
Bhi09G001895Melon (DHL92) v3.5.1mewgoB435