Bhi09G001744 (gene) Wax gourd

Overview
NameBhi09G001744
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionS12-like, 30S ribosomal protein S12 subfamily protein
Locationchr9 : 58138199 .. 58139552 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGGATCGACATGAGAGTCCAACTACATTGCATTGCCAGAATCCATGTTGTATATGAAAGAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCGAGATCACTAACTAATACTAATCTAATACTAATAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCACGGGCTTTACGCAATCAATCGGATCATATAGATATTCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCAACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTTCCTTGGGAGGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAGAGGAAAAAAACGAAGATTTCACATAGTACTTTTGATCGAAGGGAATAAAAAGAAAAAAAAAGAGAGGGAAAAATAAGTAAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTAAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAACCAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCATTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGCAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATCTTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATTGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCTGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTTCGTGTC

mRNA sequence

TTCGGATCGACATGAGAGTCCAACTACATTGCATTGCCAGAATCCATGTTGTATATGAAAGAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCGAGATCACTAACTAATACTAATCTAATACTAATAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCACGGGCTTTACGCAATCAATCGGATCATATAGATATTCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCAACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTTCCTTGGGAGGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAGAGGAAAAAAACGAAGATTTCACATAGTACTTTTGATCGAAGGGAATAAAAAGAAAAAAAAAGAGAGGGAAAAATAAGTAAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTAAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAACCAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCATTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGCAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATCTTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATTGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCTGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTTCGTGTC

Coding sequence (CDS)

ATGAATGAAAACGTGACTAAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAACCAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCATTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGCAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Homology
[Close]
BLAST of Bhi09G001744 vs. Swiss-Prot
Match: sp|A4GYN8|RR12B_POPTR (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-41
Identity = 85/93 (91.40%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 48  TVLSSGSKGDLSVNFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLV 107
           T + SGSKGDLSVNFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 108 RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 95  RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]
BLAST of Bhi09G001744 vs. Swiss-Prot
Match: sp|A4QJX7|RR12B_OLIPU (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-35
Identity = 75/86 (87.21%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 55  KGDLSVNFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKD 114
           +G  +  +STITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 LPGVRYHIVRGTLDAVGVKDRQQGRS 141
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]
BLAST of Bhi09G001744 vs. Swiss-Prot
Match: sp|Q1KXY0|RR12_HELAN (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 64  TITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIV 123
           TITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Bhi09G001744 vs. Swiss-Prot
Match: sp|Q332V3|RR12_LACSA (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 64  TITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIV 123
           TITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Bhi09G001744 vs. Swiss-Prot
Match: sp|Q0G9J5|RR12_LIRTU (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 64  TITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIV 123
           TITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Bhi09G001744 vs. TAIR10
Match: ATCG00065.1 (ribosomal protein S12A)

HSP 1 Score: 148.3 bits (373), Expect = 3.6e-36
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 64  TITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIV 123
           TITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]
BLAST of Bhi09G001744 vs. TAIR10
Match: ATCG01230.1 (ribosomal protein S12B)

HSP 1 Score: 148.3 bits (373), Expect = 3.6e-36
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 64  TITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIV 123
           TITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]
BLAST of Bhi09G001744 vs. TAIR10
Match: ATCG00905.1 (ribosomal protein S12C)

HSP 1 Score: 148.3 bits (373), Expect = 3.6e-36
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 64  TITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIV 123
           TITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]
BLAST of Bhi09G001744 vs. TAIR10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-22
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 0 

Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGH 97
           EE      +R +     K  +    ST TPK  NSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSAVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]
BLAST of Bhi09G001744 vs. TAIR10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-22
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 0 

Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGH 97
           EE      +R +     K  +    ST TPK  NSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSAVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]
BLAST of Bhi09G001744 vs. TrEMBL
Match: tr|A0A2P5QHR4|A0A2P5QHR4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29018 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.0e-58
Identity = 122/142 (85.92%), Postives = 125/142 (88.03%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+ V VTLRD +EEGRRFSNEEKDPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 8   HENVTEFVLVTLRDRVEEGRRFSNEEKDPMTSKELNEEPYE---------SGSKGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Bhi09G001744 vs. TrEMBL
Match: tr|A0A2P5QJ53|A0A2P5QJ53_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD28493 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.9e-56
Identity = 119/142 (83.80%), Postives = 123/142 (86.62%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +EN+T  +  TLRD +EEGRRFSNEEKDPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 8   HENMTDNIMPTLRDRVEEGRRFSNEEKDPMTSKELNEEPYE---------SGSKGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Bhi09G001744 vs. TrEMBL
Match: tr|U5CU38|U5CU38_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.8e-56
Identity = 119/142 (83.80%), Postives = 124/142 (87.32%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +EN T+LV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Bhi09G001744 vs. TrEMBL
Match: tr|A0A059C1Y4|A0A059C1Y4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00717 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.6e-56
Identity = 119/142 (83.80%), Postives = 122/142 (85.92%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEGRRFSNEEKDPMTSKELNEEP              KGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 135

[Close]
BLAST of Bhi09G001744 vs. TrEMBL
Match: tr|A0A1U8MFI5|A0A1U8MFI5_GOSHI (30S ribosomal protein S12, chloroplastic OS=Gossypium hirsutum OX=3635 GN=LOC107936164 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.0e-53
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+ V VTLRD +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVN
Sbjct: 8   HENVTEFVLVTLRDRVEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           F TITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FFTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 135

[Close]
BLAST of Bhi09G001744 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 2.3e-68
Identity = 137/143 (95.80%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120
           NFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]
BLAST of Bhi09G001744 vs. NCBI nr
Match: PPD74055.1 (hypothetical protein GOBAR_DD29018 [Gossypium barbadense])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 122/142 (85.92%), Postives = 125/142 (88.03%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+ V VTLRD +EEGRRFSNEEKDPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 8   HENVTEFVLVTLRDRVEEGRRFSNEEKDPMTSKELNEEPYE---------SGSKGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Bhi09G001744 vs. NCBI nr
Match: PPD74578.1 (hypothetical protein GOBAR_DD28493 [Gossypium barbadense])

HSP 1 Score: 226.9 bits (577), Expect = 4.4e-56
Identity = 119/142 (83.80%), Postives = 123/142 (86.62%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +EN+T  +  TLRD +EEGRRFSNEEKDPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 8   HENMTDNIMPTLRDRVEEGRRFSNEEKDPMTSKELNEEPYE---------SGSKGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Bhi09G001744 vs. NCBI nr
Match: ERM95251.1 (hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda])

HSP 1 Score: 226.5 bits (576), Expect = 5.8e-56
Identity = 119/142 (83.80%), Postives = 124/142 (87.32%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +EN T+LV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Bhi09G001744 vs. NCBI nr
Match: KCW72264.1 (hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis])

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 119/142 (83.80%), Postives = 122/142 (85.92%), Query Frame = 0 

Query: 2   NENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEGRRFSNEEKDPMTSKELNEEP              KGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVN 67

Query: 62  FSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYH 121
           FSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHN QEHS VLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 135

The following BLAST results are available for this feature:
BLAST of Bhi09G001744 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4GYN8|RR12B_POPTR6.1e-4191.4030S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
sp|A4QJX7|RR12B_OLIPU1.0e-3587.2130S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
sp|Q1KXY0|RR12_HELAN1.3e-3593.7530S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A... [more]
sp|Q332V3|RR12_LACSA1.3e-3593.7530S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE... [more]
sp|Q0G9J5|RR12_LIRTU1.3e-3593.7530S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r... [more]
BLAST of Bhi09G001744 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00065.13.6e-3694.81ribosomal protein S12A[more]
ATCG01230.13.6e-3694.81ribosomal protein S12B[more]
ATCG00905.13.6e-3694.81ribosomal protein S12C[more]
AT2G07675.18.7e-2249.51Ribosomal protein S12/S23 family protein[more]
ATMG00980.18.7e-2249.51Ribosomal protein S12/S23 family protein[more]
BLAST of Bhi09G001744 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5QHR4|A0A2P5QHR4_GOSBA7.0e-5885.92Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29018 PE=3 SV... [more]
tr|A0A2P5QJ53|A0A2P5QJ53_GOSBA2.9e-5683.80Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD28493 PE=3 SV... [more]
tr|U5CU38|U5CU38_AMBTC3.8e-5683.80Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290... [more]
tr|A0A059C1Y4|A0A059C1Y4_EUCGR8.6e-5683.80Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00717 PE=4 SV... [more]
tr|A0A1U8MFI5|A0A1U8MFI5_GOSHI1.0e-5381.6930S ribosomal protein S12, chloroplastic OS=Gossypium hirsutum OX=3635 GN=LOC107... [more]
BLAST of Bhi09G001744 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932068.12.3e-6895.80uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar... [more]
PPD74055.11.1e-5785.92hypothetical protein GOBAR_DD29018 [Gossypium barbadense][more]
PPD74578.14.4e-5683.80hypothetical protein GOBAR_DD28493 [Gossypium barbadense][more]
ERM95251.15.8e-5683.80hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda][more]
KCW72264.11.3e-5583.80hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005679Ribosomal_S12_bac
IPR006032Ribosomal_S12/S23
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001744Bhi09M001744mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 83..102
score: 72.71
coord: 67..82
score: 78.82
coord: 119..135
score: 64.3
coord: 135..143
score: 32.37
coord: 102..119
score: 85.8
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 58..138
e-value: 5.4E-27
score: 93.6
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 27..141
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 52..140
e-value: 2.3E-43
score: 145.0
IPR005679Ribosomal protein S12, bacterial-typeCDDcd03368Ribosomal_S12coord: 64..135
e-value: 5.16482E-48
score: 151.517
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 23..143
e-value: 2.2E-41
score: 142.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..35
NoneNo IPR availablePANTHERPTHR11652:SF128S RIBOSOMAL PROTEIN S12, MITOCHONDRIALcoord: 27..141
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 60..140

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G001744Cucumber (Gy14) v1cgywgoB689
Bhi09G001744Cucurbita moschata (Rifu)cmowgoB0614
Bhi09G001744Wild cucumber (PI 183967)cpiwgoB344
Bhi09G001744Cucumber (Chinese Long) v3cucwgoB347
Bhi09G001744Cucumber (Chinese Long) v2cuwgoB341
Bhi09G001744Bottle gourd (USVL1VR-Ls)lsiwgoB400
Bhi09G001744Melon (DHL92) v3.6.1medwgoB438
Bhi09G001744Melon (DHL92) v3.5.1mewgoB436
Bhi09G001744Watermelon (Charleston Gray)wcgwgoB485
Bhi09G001744Watermelon (97103) v2wgowmbB584
Bhi09G001744Watermelon (97103) v1wgowmB628
Bhi09G001744Silver-seed gourdcarwgoB0124