Bhi09G001552 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G001552
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Glutamate-gated kainate-type ion channel receptor subunit GluR5
Location	chr9 : 50926586 .. 50927071 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCGCTTCCGTTTCATCAGAGGCGGTGAGAGTTCCAAGAGCGTATTGGGAGCAGATGTTGCCGAAGAAGTTACCATCCCCGTCGTCAGCACCGTCGAAAGGGACCAACACAGTCGCTCCTTCCTCTTCTAAATCCATGAAAGTTGATGGGAGTCTCCCTACGAAGGATGGGAACGTTTAGGTTTCGGGTGGTACAGGGAAGTTGATATACTTCCTTGTTTGTTGGAAAAATTATTCGATGTGACCGTTATAATGCGGTCGTTTCCTTCTCATAACCATTAGTTTTTAATTTCTCTCCTGTGCCAGCCTCACGACTAATTTCTTGCCCTAAACGAAGGGGAAAATTGAGGGACTGAAGGACGAGTGGGGCAACATGGCGGTTTACGACGGCACCAGAGTGCCGCTTCTACTGGTTCGGTGGCTTGAGCTCTGA

mRNA sequence

ATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCGCTTCCGTTTCATCAGAGGCGGTGAGAGTTCCAAGAGCGTATTGGGAGCAGATGTTGCCGAAGAAGTTACCATCCCCGTCGTCAGCACCGTCGAAAGGGACCAACACAGTCGCTCCTTCCTCTTCTAAATCCATGAAAGTTGATGGGAGTCTCCCTACGAAGGATGGGAACGGGAAAATTGAGGGACTGAAGGACGAGTGGGGCAACATGGCGGTTTACGACGGCACCAGAGTGCCGCTTCTACTGGTTCGGTGGCTTGAGCTCTGA

Coding sequence (CDS)

ATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCGCTTCCGTTTCATCAGAGGCGGTGAGAGTTCCAAGAGCGTATTGGGAGCAGATGTTGCCGAAGAAGTTACCATCCCCGTCGTCAGCACCGTCGAAAGGGACCAACACAGTCGCTCCTTCCTCTTCTAAATCCATGAAAGTTGATGGGAGTCTCCCTACGAAGGATGGGAACGGGAAAATTGAGGGACTGAAGGACGAGTGGGGCAACATGGCGGTTTACGACGGCACCAGAGTGCCGCTTCTACTGGTTCGGTGGCTTGAGCTCTGA

Protein sequence

MLLSFNLRFILFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKSMKVDGSLPTKDGNGKIEGLKDEWGNMAVYDGTRVPLLLVRWLEL

Homology

[Close]

BLAST of Bhi09G001552 vs. TrEMBL
Match: tr|W9S9P5|W9S9P5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 11 LFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVA-PSSSKSMKVDGS 70
          LFLTL+ AL  + SEA R+P++ WEQMLPKKLPSP+S+PSKGTN+V+  SSSK + VD +
Sbjct: 10 LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPTKDG 76
          LP+ DG
Sbjct: 70 LPSSDG 74

[Close]

BLAST of Bhi09G001552 vs. TrEMBL
Match: tr|A0A0B2Q2G7|A0A0B2Q2G7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_046184 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-10
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 13 LTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKSMKVDGSLPT 72
          L L L    V SE  R+P+ YWEQM+PKKLPSPSS+PSKGTN+V+PSSS + K DG LP 
Sbjct: 11 LLLTLLAFVVLSEGSRLPKEYWEQMMPKKLPSPSSSPSKGTNSVSPSSSLTTKNDG-LPM 70

Query: 73 KDG 76
           DG
Sbjct: 71 SDG 72

[Close]

BLAST of Bhi09G001552 vs. TrEMBL
Match: tr|A0A2P5W5E0|A0A2P5W5E0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34373 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MLLSFNLRFILFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML+S   + +L L L+  +  + SEA R P+ YWEQMLPKKLP+PSS+PSKGTN+V  S+
Sbjct: 1  MLVSCRHKCLLILFLLAFI--LLSEASRSPKVYWEQMLPKKLPTPSSSPSKGTNSVTMST 60

Query: 61 SKSMKVDGSLPTKDG 76
          SK++K D SLP+ DG
Sbjct: 61 SKAVKPDRSLPSSDG 73

[Close]

BLAST of Bhi09G001552 vs. TrEMBL
Match: tr|A0A2P4IB83|A0A2P4IB83_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_36617 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MLLSFNLRFILFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML S+  + +LF  L      V SEA R+P+ YWEQMLPKKLP PSS+PSKGTN+++ SS
Sbjct: 1  MLGSWRHKCLLFTLLAFI---VLSEASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSS 60

Query: 61 SKSMKVDGSLPTKDG 76
          SK++K + +LP+ DG
Sbjct: 61 SKALKANRNLPSSDG 72

[Close]

BLAST of Bhi09G001552 vs. TrEMBL
Match: tr|A0A0S3RNK5|A0A0S3RNK5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G214100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MLLSFNLRFILFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          M  S+  + +LF  L + L    SE  R+P+ YWEQMLPKKLPSPSS+PSKGTN+V PSS
Sbjct: 1  MKASWKHQCLLFTLLAIVLL---SEGSRLPKEYWEQMLPKKLPSPSSSPSKGTNSVTPSS 60

Query: 61 SKSMKVDGSLPTKDG 76
          S +M+  G LPT DG
Sbjct: 61 SSTMENHG-LPTSDG 71

[Close]

BLAST of Bhi09G001552 vs. NCBI nr
Match: EXC32449.1 (hypothetical protein L484_012616 [Morus notabilis])

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 11 LFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVA-PSSSKSMKVDGS 70
          LFLTL+ AL  + SEA R+P++ WEQMLPKKLPSP+S+PSKGTN+V+  SSSK + VD +
Sbjct: 10 LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPTKDG 76
          LP+ DG
Sbjct: 70 LPSSDG 74

[Close]

BLAST of Bhi09G001552 vs. NCBI nr
Match: KHN15525.1 (hypothetical protein glysoja_046184 [Glycine soja])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 13 LTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKSMKVDGSLPT 72
          L L L    V SE  R+P+ YWEQM+PKKLPSPSS+PSKGTN+V+PSSS + K DG LP 
Sbjct: 11 LLLTLLAFVVLSEGSRLPKEYWEQMMPKKLPSPSSSPSKGTNSVSPSSSLTTKNDG-LPM 70

Query: 73 KDG 76
           DG
Sbjct: 71 SDG 72

[Close]

BLAST of Bhi09G001552 vs. NCBI nr
Match: PPR86316.1 (hypothetical protein GOBAR_AA34373 [Gossypium barbadense])

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MLLSFNLRFILFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML+S   + +L L L+  +  + SEA R P+ YWEQMLPKKLP+PSS+PSKGTN+V  S+
Sbjct: 1  MLVSCRHKCLLILFLLAFI--LLSEASRSPKVYWEQMLPKKLPTPSSSPSKGTNSVTMST 60

Query: 61 SKSMKVDGSLPTKDG 76
          SK++K D SLP+ DG
Sbjct: 61 SKAVKPDRSLPSSDG 73

[Close]

BLAST of Bhi09G001552 vs. NCBI nr
Match: POE65790.1 (hypothetical protein CFP56_38260 [Quercus suber] >POF01845.1 hypothetical protein CFP56_36617 [Quercus suber])

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-09
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MLLSFNLRFILFLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML S+  + +LF  L      V SEA R+P+ YWEQMLPKKLP PSS+PSKGTN+++ SS
Sbjct: 1  MLGSWRHKCLLFTLLAFI---VLSEASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSS 60

Query: 61 SKSMKVDGSLPTKDG 76
          SK++K + +LP+ DG
Sbjct: 61 SKALKANRNLPSSDG 72

[Close]

BLAST of Bhi09G001552 vs. NCBI nr
Match: RDX71595.1 (hypothetical protein CR513_49037, partial [Mucuna pruriens])

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-09
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 12 FLTLVLALASVSSEAVRVPRAYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKSMKVDGSLP 71
          FL L L    V SE  R+P+ YWEQMLPKKLPSPSS+PS GTN+V  +SS + K+D +LP
Sbjct: 9  FLFLTLLAFIVLSEGSRLPKGYWEQMLPKKLPSPSSSPSGGTNSVFATSSTASKID-NLP 68

Query: 72 TKDGNGK 79
          + DG G+
Sbjct: 69 SSDGKGQ 74

The following BLAST results are available for this feature:

BLAST of Bhi09G001552 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G001552 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G001552 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9S9P5\|W9S9P5_9ROSA	1.8e-10	63.64	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1	[more]
tr\|A0A0B2Q2G7\|A0A0B2Q2G7_GLYSO	9.1e-10	63.49	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_046184 PE=4 SV=1	[more]
tr\|A0A2P5W5E0\|A0A2P5W5E0_GOSBA	2.0e-09	56.00	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34373 PE=4 SV...	[more]
tr\|A0A2P4IB83\|A0A2P4IB83_QUESU	2.6e-09	54.67	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_36617 PE=4 SV=1	[more]
tr\|A0A0S3RNK5\|A0A0S3RNK5_PHAAN	4.5e-09	57.33	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G...	[more]

BLAST of Bhi09G001552 vs. NCBI nr


Match Name	E-value	Identity	Description
EXC32449.1	2.8e-10	63.64	hypothetical protein L484_012616 [Morus notabilis]	[more]
KHN15525.1	1.4e-09	63.49	hypothetical protein glysoja_046184 [Glycine soja]	[more]
PPR86316.1	3.1e-09	56.00	hypothetical protein GOBAR_AA34373 [Gossypium barbadense]	[more]
POE65790.1	4.0e-09	54.67	hypothetical protein CFP56_38260 [Quercus suber] >POF01845.1 hypothetical protei...	[more]
RDX71595.1	4.0e-09	58.21	hypothetical protein CR513_49037, partial [Mucuna pruriens]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001552	Bhi09M001552	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi09G001552	CmaCh09G010540	Cucurbita maxima (Rimu)	cmawgoB0027

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G001552	Cucumber (Gy14) v2	cgybwgoB679
Bhi09G001552	Cucurbita maxima (Rimu)	cmawgoB0616
Bhi09G001552	Cucurbita moschata (Rifu)	cmowgoB0021
Bhi09G001552	Cucurbita moschata (Rifu)	cmowgoB0616
Bhi09G001552	Cucurbita pepo (Zucchini)	cpewgoB0714
Bhi09G001552	Cucurbita pepo (Zucchini)	cpewgoB0989
Bhi09G001552	Wild cucumber (PI 183967)	cpiwgoB722
Bhi09G001552	Cucumber (Chinese Long) v3	cucwgoB736
Bhi09G001552	Cucumber (Chinese Long) v2	cuwgoB709
Bhi09G001552	Bottle gourd (USVL1VR-Ls)	lsiwgoB280
Bhi09G001552	Melon (DHL92) v3.6.1	medwgoB243
Bhi09G001552	Melon (DHL92) v3.5.1	mewgoB243
Bhi09G001552	Watermelon (Charleston Gray)	wcgwgoB063
Bhi09G001552	Watermelon (97103) v2	wgowmbB609
Bhi09G001552	Watermelon (97103) v1	wgowmB581
Bhi09G001552	Silver-seed gourd	carwgoB0088
Bhi09G001552	Silver-seed gourd	carwgoB1209