Bhi09G001492 (gene) Wax gourd

Overview
NameBhi09G001492
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionCytochrome c biogenesis FC
Locationchr9 : 48631692 .. 48631844 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGCTCTAGGCACCCCCATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGTCCGCCCTTCGTCGGGTGGTGCTTGTGTGTGGGGTGTGCTACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAACGTGCCGATAG

mRNA sequence

ATGGGGTGCTCTAGGCACCCCCATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGTCCGCCCTTCGTCGGGTGGTGCTTGTGTGTGGGGTGTGCTACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAACGTGCCGATAG

Coding sequence (CDS)

ATGGGGTGCTCTAGGCACCCCCATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGTCCGCCCTTCGTCGGGTGGTGCTTGTGTGTGGGGTGTGCTACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAACGTGCCGATAG

Protein sequence

MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR
Homology
[Close]
BLAST of Bhi09G001492 vs. Swiss-Prot
Match: sp|P93286|CCMFC_ARATH (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMFC PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-15
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   MGCSRHPH--LERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPH  LERRVEGFGP+AFPV P  GGACV GV PEIGLEALALP  R
Sbjct: 173 MRCSGHPHLDLERRVEGFGPLAFPVPPELGGACVGGVPPEIGLEALALPRSR 224

[Close]
BLAST of Bhi09G001492 vs. TAIR10
Match: ATMG00180.1 (cytochrome C biogenesis 452)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-16
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   MGCSRHPH--LERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPH  LERRVEGFGP+AFPV P  GGACV GV PEIGLEALALP  R
Sbjct: 173 MRCSGHPHLDLERRVEGFGPLAFPVPPELGGACVGGVPPEIGLEALALPRSR 224

[Close]
BLAST of Bhi09G001492 vs. TrEMBL
Match: tr|D5I3C4|D5I3C4_CITLA (Cytochrome c biogenesis FC OS=Citrullus lanatus OX=3654 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPT R
Sbjct: 173 MRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTSR 222

[Close]
BLAST of Bhi09G001492 vs. TrEMBL
Match: tr|G3EU31|G3EU31_CUCME (Cytochrome c biogenesis FC OS=Cucumis melo subsp. melo OX=412675 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRV GFGPVAFPVRPSSGGACV GVLPEIGLEALALPT R
Sbjct: 177 MRCSGHPHLERRVSGFGPVAFPVRPSSGGACVGGVLPEIGLEALALPTSR 226

[Close]
BLAST of Bhi09G001492 vs. TrEMBL
Match: tr|G3EIX3|G3EIX3_CUCSA (Cytochrome c biogenesis FC OS=Cucumis sativus OX=3659 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRV GFGPVAFPVRPSSGGACV GVLPEIGLEALALPT R
Sbjct: 177 MRCSGHPHLERRVSGFGPVAFPVRPSSGGACVGGVLPEIGLEALALPTSR 226

[Close]
BLAST of Bhi09G001492 vs. TrEMBL
Match: tr|D5I3F3|D5I3F3_CUCPE (Cytochrome c biogenesis FC OS=Cucurbita pepo OX=3663 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERR EGFGPVAF VRPSSGG CVWGVLPEIGLEALALPT R
Sbjct: 173 MRCSGHPHLERRFEGFGPVAF-VRPSSGGTCVWGVLPEIGLEALALPTSR 221

[Close]
BLAST of Bhi09G001492 vs. TrEMBL
Match: tr|A0A142BZ14|A0A142BZ14_ZIZJJ (Cytochrome c biogenesis FC OS=Ziziphus jujuba OX=326968 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRVEGFGPVAFPV PSSGGACV GV PEIGLEALALPT R
Sbjct: 174 MRCSGHPHLERRVEGFGPVAFPVPPSSGGACVRGVPPEIGLEALALPTSR 223

[Close]
BLAST of Bhi09G001492 vs. NCBI nr
Match: YP_003587254.1 (cytochrome c biogenesis FC [Citrullus lanatus] >ACV96627.1 cytochrome c biogenesis FC (mitochondrion) [Citrullus lanatus])

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPT R
Sbjct: 173 MRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTSR 222

[Close]
BLAST of Bhi09G001492 vs. NCBI nr
Match: YP_004849321.1 (cytochrome c biogenesis FC (mitochondrion) [Cucumis sativus] >ADZ10748.1 cytochrome c biogenesis FC (mitochondrion) [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRV GFGPVAFPVRPSSGGACV GVLPEIGLEALALPT R
Sbjct: 177 MRCSGHPHLERRVSGFGPVAFPVRPSSGGACVGGVLPEIGLEALALPTSR 226

[Close]
BLAST of Bhi09G001492 vs. NCBI nr
Match: AEN56115.1 (cytochrome c biogenesis FC (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRV GFGPVAFPVRPSSGGACV GVLPEIGLEALALPT R
Sbjct: 177 MRCSGHPHLERRVSGFGPVAFPVRPSSGGACVGGVLPEIGLEALALPTSR 226

[Close]
BLAST of Bhi09G001492 vs. NCBI nr
Match: YP_003587367.1 (cytochrome c biogenesis FC [Cucurbita pepo] >ACV96669.1 cytochrome c biogenesis FC (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERR EGFGPVAF VRPSSGG CVWGVLPEIGLEALALPT R
Sbjct: 173 MRCSGHPHLERRFEGFGPVAF-VRPSSGGTCVWGVLPEIGLEALALPTSR 221

[Close]
BLAST of Bhi09G001492 vs. NCBI nr
Match: YP_009241673.1 (cytochrome c biogenesis FC (mitochondrion) [Ziziphus jujuba] >AMP43658.1 cytochrome c biogenesis FC (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MGCSRHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIGLEALALPTCR 51
           M CS HPHLERRVEGFGPVAFPV PSSGGACV GV PEIGLEALALPT R
Sbjct: 174 MRCSGHPHLERRVEGFGPVAFPVPPSSGGACVRGVPPEIGLEALALPTSR 223

The following BLAST results are available for this feature:
BLAST of Bhi09G001492 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P93286|CCMFC_ARATH4.5e-1576.92Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsi... [more]
BLAST of Bhi09G001492 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00180.12.5e-1676.92cytochrome C biogenesis 452[more]
BLAST of Bhi09G001492 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|D5I3C4|D5I3C4_CITLA1.3e-1994.00Cytochrome c biogenesis FC OS=Citrullus lanatus OX=3654 GN=ccmFc PE=4 SV=1[more]
tr|G3EU31|G3EU31_CUCME1.6e-1790.00Cytochrome c biogenesis FC OS=Cucumis melo subsp. melo OX=412675 GN=ccmFc PE=4 S... [more]
tr|G3EIX3|G3EIX3_CUCSA1.6e-1790.00Cytochrome c biogenesis FC OS=Cucumis sativus OX=3659 GN=ccmFc PE=4 SV=1[more]
tr|D5I3F3|D5I3F3_CUCPE2.3e-1688.00Cytochrome c biogenesis FC OS=Cucurbita pepo OX=3663 GN=ccmFc PE=4 SV=1[more]
tr|A0A142BZ14|A0A142BZ14_ZIZJJ2.3e-1688.00Cytochrome c biogenesis FC OS=Ziziphus jujuba OX=326968 GN=ccmFc PE=4 SV=1[more]
BLAST of Bhi09G001492 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_003587254.12.0e-1994.00cytochrome c biogenesis FC [Citrullus lanatus] >ACV96627.1 cytochrome c biogenes... [more]
YP_004849321.12.4e-1790.00cytochrome c biogenesis FC (mitochondrion) [Cucumis sativus] >ADZ10748.1 cytochr... [more]
AEN56115.12.4e-1790.00cytochrome c biogenesis FC (mitochondrion) [Cucumis melo subsp. melo][more]
YP_003587367.13.5e-1688.00cytochrome c biogenesis FC [Cucurbita pepo] >ACV96669.1 cytochrome c biogenesis ... [more]
YP_009241673.13.5e-1688.00cytochrome c biogenesis FC (mitochondrion) [Ziziphus jujuba] >AMP43658.1 cytochr... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001492Bhi09M001492mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G001492Cucumber (Gy14) v2cgybwgoB666
Bhi09G001492Cucurbita maxima (Rimu)cmawgoB0027
Bhi09G001492Cucurbita maxima (Rimu)cmawgoB0616
Bhi09G001492Cucurbita moschata (Rifu)cmowgoB0021
Bhi09G001492Cucurbita moschata (Rifu)cmowgoB0616
Bhi09G001492Cucurbita pepo (Zucchini)cpewgoB0714
Bhi09G001492Cucurbita pepo (Zucchini)cpewgoB0989
Bhi09G001492Wild cucumber (PI 183967)cpiwgoB709
Bhi09G001492Cucumber (Chinese Long) v3cucwgoB722
Bhi09G001492Cucumber (Chinese Long) v2cuwgoB694
Bhi09G001492Bottle gourd (USVL1VR-Ls)lsiwgoB280
Bhi09G001492Melon (DHL92) v3.6.1medwgoB256
Bhi09G001492Melon (DHL92) v3.5.1mewgoB240
Bhi09G001492Watermelon (Charleston Gray)wcgwgoB063
Bhi09G001492Watermelon (97103) v2wgowmbB609
Bhi09G001492Watermelon (97103) v1wgowmB581
Bhi09G001492Silver-seed gourdcarwgoB0088
Bhi09G001492Silver-seed gourdcarwgoB0519
Bhi09G001492Silver-seed gourdcarwgoB1030