Bhi09G001248 (gene) Wax gourd

NameBhi09G001248
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionsmall subunit processome component 20 homolog
Locationchr9 : 39039741 .. 39040412 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACCCATACTAGATATGTAAGATATGGCTATGGTTATCTTTATTGCACTAGTTGAGGCTACTACCACTTTTAAGTGCTCGGTTTTATTTTTCTCTTTAAGAATTACAGTTGAATTTATTCATGCTCTTTTAGGCGACATATTTGGCGTCCGTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTGCTCTCTAGTGAGAAGGCTGGGCTTGAAGAATTAAATAGACTTGTGTACCTTGCCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGCTGATTATTTGGATTTTATTTATGGGTAAGTTGGAAATTTTTCATTCTAGACAATTTTTTCTACCTTCTAATCATTATTTCATCTCCAACCTTGGTTGTTGGAATCATGTAGTATTCCCTTAACCGTGTTAATTATAGGCCAGAGGTCAGCAAAAGATTCTCTTCTGAAGAGTTTCAAACAGATAAGGTTGAAAATGTTGTAGATAATTTGCGTCACCCAGATAAGGGAGTTCGTATATCTACTCTCAGAATATTGTGCCACTATGAGCCTTTGCGGTCTGCCTCCCTTACAAAGAACCCTTCAATTGATCACAAGATGGAAACTGAAAATTTGGAACAATATTCTGATGATTCAATAGGCGGTGAG

mRNA sequence

ATGCATACCCATACTAGATATGTAAGATATGGCTATGGCGACATATTTGGCGTCCGTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTGCTCTCTAGTGAGAAGGCTGGGCTTGAAGAATTAAATAGACTTGTGTACCTTGCCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGCTGATTATTTGGATTTTATTTATGGGCCAGAGGTCAGCAAAAGATTCTCTTCTGAAGAGTTTCAAACAGATAAGGTTGAAAATGTTGTAGATAATTTGCGTCACCCAGATAAGGGAGTTCGTATATCTACTCTCAGAATATTGTGCCACTATGAGCCTTTGCGGTCTGCCTCCCTTACAAAGAACCCTTCAATTGATCACAAGATGGAAACTGAAAATTTGGAACAATATTCTGATGATTCAATAGGCGGTGAG

Coding sequence (CDS)

ATGCATACCCATACTAGATATGTAAGATATGGCTATGGCGACATATTTGGCGTCCGTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTGCTCTCTAGTGAGAAGGCTGGGCTTGAAGAATTAAATAGACTTGTGTACCTTGCCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGCTGATTATTTGGATTTTATTTATGGGCCAGAGGTCAGCAAAAGATTCTCTTCTGAAGAGTTTCAAACAGATAAGGTTGAAAATGTTGTAGATAATTTGCGTCACCCAGATAAGGGAGTTCGTATATCTACTCTCAGAATATTGTGCCACTATGAGCCTTTGCGGTCTGCCTCCCTTACAAAGAACCCTTCAATTGATCACAAGATGGAAACTGAAAATTTGGAACAATATTCTGATGATTCAATAGGCGGTGAG

Protein sequence

MHTHTRYVRYGYGDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYLDFIYGPEVSKRFSSEEFQTDKVENVVDNLRHPDKGVRISTLRILCHYEPLRSASLTKNPSIDHKMETENLEQYSDDSIGGE
BLAST of Bhi09G001248 vs. TAIR10
Match: AT4G30990.2 (ARM repeat superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0

Query: 24  ESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYLDFIYGPEVSKR 83
           +S++G T+ S  K+     + LEE    +  AK Y SC QVL  VAD L+F++ P ++  
Sbjct: 560 QSLLGTTLRSCYKMTGINHSDLEE---ALSFAKDYKSCEQVLSPVADVLEFMHRPALAHG 619

Query: 84  FSS--EEFQTDKV----ENVVDNLRHPDKGVRISTLRILCHYEPLRSASLTKNPSIDHKM 141
            S    E Q +K     E   +NLRHP+K +R+ TLRILCH+E L S    +      KM
Sbjct: 620 RSKPYPELQANKAGDAFEIFSENLRHPNKNIRLMTLRILCHFETLSSDPSFEEHPPKKKM 679

BLAST of Bhi09G001248 vs. TrEMBL
Match: tr|A0A0A0LIC2|A0A0A0LIC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G148430 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.5e-55
Identity = 117/149 (78.52%), Postives = 128/149 (85.91%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           GDIFG+ KE LESIIGATIGSYLKLLSSEKAGLEEL+RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 554 GDIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYL 613

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           DFIYGP    ++SKR  SEEFQ DKVE+ V    DNLRH DKGVR+STLRILCHYEPL+S
Sbjct: 614 DFIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCHYEPLQS 673

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
           A+LTK  SID++ME ENLE YSDD +G E
Sbjct: 674 ATLTKESSIDNEMEAENLEPYSDDLVGSE 702

BLAST of Bhi09G001248 vs. TrEMBL
Match: tr|A0A1S3C531|A0A1S3C531_CUCME (U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo OX=3656 GN=LOC103496945 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.1e-52
Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           GDIFG+ KE LESIIGATIGSYLKLLSSEKAGLEEL+RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 557 GDIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYL 616

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           DFIYGP    ++SKR  SEEFQ DKVE+ V    DNLRH DKGVR+STLRILC YEPL+S
Sbjct: 617 DFIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCQYEPLQS 676

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
           A+L K  SID++ME EN   YSDD +G E
Sbjct: 677 ANLAKESSIDNEMEAENFALYSDDLVGSE 705

BLAST of Bhi09G001248 vs. TrEMBL
Match: tr|A0A2I4HWH3|A0A2I4HWH3_9ROSI (small subunit processome component 20 homolog isoform X1 OS=Juglans regia OX=51240 GN=LOC109022127 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           G + G+ K+  +S+IGA + SY K    +++  EE ++ +YLAK+Y S +QVL AVADYL
Sbjct: 554 GSVAGLPKQTWQSVIGAALSSYNKSRHGKESQPEETSKFLYLAKKYISSAQVLSAVADYL 613

Query: 73  DFIYGPEVSKRFSSEEFQ--------TDKVENVVDNLRHPDKGVRISTLRILCHYEPLRS 132
           D +YGP V    S+ ++          D V    DNLR  +KG+R+STLRILCHYEPLRS
Sbjct: 614 DIVYGPTVEAHSSNRKYHPELSVEKAVDAVMIFADNLRDSNKGLRLSTLRILCHYEPLRS 673

Query: 133 ASLTKNPSIDHKMETE 141
              T + ++  K ++E
Sbjct: 674 VDSTNDQAVGKKTKSE 689

BLAST of Bhi09G001248 vs. TrEMBL
Match: tr|A0A2I4HWK0|A0A2I4HWK0_9ROSI (small subunit processome component 20 homolog isoform X3 OS=Juglans regia OX=51240 GN=LOC109022127 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           G + G+ K+  +S+IGA + SY K    +++  EE ++ +YLAK+Y S +QVL AVADYL
Sbjct: 486 GSVAGLPKQTWQSVIGAALSSYNKSRHGKESQPEETSKFLYLAKKYISSAQVLSAVADYL 545

Query: 73  DFIYGPEVSKRFSSEEFQ--------TDKVENVVDNLRHPDKGVRISTLRILCHYEPLRS 132
           D +YGP V    S+ ++          D V    DNLR  +KG+R+STLRILCHYEPLRS
Sbjct: 546 DIVYGPTVEAHSSNRKYHPELSVEKAVDAVMIFADNLRDSNKGLRLSTLRILCHYEPLRS 605

Query: 133 ASLTKNPSIDHKMETE 141
              T + ++  K ++E
Sbjct: 606 VDSTNDQAVGKKTKSE 621

BLAST of Bhi09G001248 vs. TrEMBL
Match: tr|A0A2I4HWH7|A0A2I4HWH7_9ROSI (small subunit processome component 20 homolog isoform X2 OS=Juglans regia OX=51240 GN=LOC109022127 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           G + G+ K+  +S+IGA + SY K    +++  EE ++ +YLAK+Y S +QVL AVADYL
Sbjct: 554 GSVAGLPKQTWQSVIGAALSSYNKSRHGKESQPEETSKFLYLAKKYISSAQVLSAVADYL 613

Query: 73  DFIYGPEVSKRFSSEEFQ--------TDKVENVVDNLRHPDKGVRISTLRILCHYEPLRS 132
           D +YGP V    S+ ++          D V    DNLR  +KG+R+STLRILCHYEPLRS
Sbjct: 614 DIVYGPTVEAHSSNRKYHPELSVEKAVDAVMIFADNLRDSNKGLRLSTLRILCHYEPLRS 673

Query: 133 ASLTKNPSIDHKMETE 141
              T + ++  K ++E
Sbjct: 674 VDSTNDQAVGKKTKSE 689

BLAST of Bhi09G001248 vs. NCBI nr
Match: XP_011649103.1 (PREDICTED: small subunit processome component 20 homolog [Cucumis sativus] >KGN61498.1 hypothetical protein Csa_2G148430 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 5.3e-55
Identity = 117/149 (78.52%), Postives = 128/149 (85.91%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           GDIFG+ KE LESIIGATIGSYLKLLSSEKAGLEEL+RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 554 GDIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYL 613

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           DFIYGP    ++SKR  SEEFQ DKVE+ V    DNLRH DKGVR+STLRILCHYEPL+S
Sbjct: 614 DFIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCHYEPLQS 673

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
           A+LTK  SID++ME ENLE YSDD +G E
Sbjct: 674 ATLTKESSIDNEMEAENLEPYSDDLVGSE 702

BLAST of Bhi09G001248 vs. NCBI nr
Match: XP_023513964.1 (small subunit processome component 20 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.7 bits (561), Expect = 3.4e-54
Identity = 117/149 (78.52%), Postives = 126/149 (84.56%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           GDIFGV KEN ES+IGATIGSYLKLLS EKAGLEE  RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 552 GDIFGVPKENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYL 611

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           DFI+GP    +VSKR  SEEFQ DKVE+ V    DNLRHPDKGVRISTLRILCHYEPLRS
Sbjct: 612 DFIHGPALEVDVSKRIYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPLRS 671

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
             L K+P+ID++METENLE  SDDS+G E
Sbjct: 672 GILIKDPAIDNEMETENLESCSDDSVGSE 700

BLAST of Bhi09G001248 vs. NCBI nr
Match: XP_008457216.1 (PREDICTED: U3 small nucleolar RNA-associated protein 20 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           GDIFG+ KE LESIIGATIGSYLKLLSSEKAGLEEL+RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 557 GDIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYL 616

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           DFIYGP    ++SKR  SEEFQ DKVE+ V    DNLRH DKGVR+STLRILC YEPL+S
Sbjct: 617 DFIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCQYEPLQS 676

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
           A+L K  SID++ME EN   YSDD +G E
Sbjct: 677 ANLAKESSIDNEMEAENFALYSDDLVGSE 705

BLAST of Bhi09G001248 vs. NCBI nr
Match: XP_022999923.1 (small subunit processome component 20 homolog [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           G+IFGV +EN ES+IGATIGSYLKLLS EKAGLEE  RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 552 GNIFGVPEENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYL 611

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           DFI+GP    +VSKR  SEEFQ DKVE+ V    DNLRHPDKGVRISTLRILCHYEPLRS
Sbjct: 612 DFIHGPALEVDVSKRIYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPLRS 671

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
               K+P+ID++METENLE  S DS+G E
Sbjct: 672 EIRIKDPAIDNEMETENLESCSYDSVGSE 700

BLAST of Bhi09G001248 vs. NCBI nr
Match: XP_022964369.1 (small subunit processome component 20 homolog [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 3.5e-51
Identity = 112/149 (75.17%), Postives = 124/149 (83.22%), Query Frame = 0

Query: 13  GDIFGVRKENLESIIGATIGSYLKLLSSEKAGLEELNRLVYLAKRYSSCSQVLVAVADYL 72
           G+IFGV KEN ES+IGATIGSYLKLLS EKAGLEE  RLVYLAKRYSSCSQVLVAVADYL
Sbjct: 552 GNIFGVPKENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYL 611

Query: 73  DFIYGP----EVSKRFSSEEFQTDKVENVV----DNLRHPDKGVRISTLRILCHYEPLRS 132
           +FI+GP    +VSKR  SEEFQ DKVE+ V    DNLRHPDK VR+STLRILCHYEPLRS
Sbjct: 612 EFIHGPALEVDVSKRIYSEEFQADKVEDAVQVFADNLRHPDKVVRMSTLRILCHYEPLRS 671

Query: 133 ASLTKNPSIDHKMETENLEQYSDDSIGGE 154
             L K+P+ D++METENLE  SDDS+G E
Sbjct: 672 GILIKDPATDNEMETENLESCSDDSVGSE 700

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT4G30990.22.5e-1439.02ARM repeat superfamily protein[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LIC2|A0A0A0LIC2_CUCSA3.5e-5578.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G148430 PE=4 SV=1[more]
tr|A0A1S3C531|A0A1S3C531_CUCME2.1e-5275.84U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A2I4HWH3|A0A2I4HWH3_9ROSI3.0e-2243.38small subunit processome component 20 homolog isoform X1 OS=Juglans regia OX=512... [more]
tr|A0A2I4HWK0|A0A2I4HWK0_9ROSI3.0e-2243.38small subunit processome component 20 homolog isoform X3 OS=Juglans regia OX=512... [more]
tr|A0A2I4HWH7|A0A2I4HWH7_9ROSI3.0e-2243.38small subunit processome component 20 homolog isoform X2 OS=Juglans regia OX=512... [more]
Match NameE-valueIdentityDescription
XP_011649103.15.3e-5578.52PREDICTED: small subunit processome component 20 homolog [Cucumis sativus] >KGN6... [more]
XP_023513964.13.4e-5478.52small subunit processome component 20 homolog [Cucurbita pepo subsp. pepo][more]
XP_008457216.13.2e-5275.84PREDICTED: U3 small nucleolar RNA-associated protein 20 [Cucumis melo][more]
XP_022999923.12.7e-5175.84small subunit processome component 20 homolog [Cucurbita maxima][more]
XP_022964369.13.5e-5175.17small subunit processome component 20 homolog [Cucurbita moschata][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0030686 90S preribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001248Bhi09M001248mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..153