Bhi09G001061 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G001061
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ty3-gypsy retrotransposon protein
Location	chr9 : 31702403 .. 31702714 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTACAACTGCCAATTTCACCTTCCAAAGGGTATGATGTATTGCTGGGCTCGAGAGGATCAGTTCAAACAGTCGGAGTGTGTAAAGGTGTGTTTATAACCATTTCTGATTTATCAATTATACAAGAAGACTTTCTCCCTCTATCTTTGGCCAGCGCGGACGTCATTTTGGGAGTAGCTTTGGGGCAGATTACCTTCGATTATAGGCTGTCAACGATGGAATTCAAAGTTGAGGAATGGACAGTGCAGTTGCAAGGAGACCGGGGGCTGGTTAAATCTCAAATATCCTTGAAGTCTATGGCCAAGGCG

mRNA sequence

ATGGAGCTACAACTGCCAATTTCACCTTCCAAAGGGTATGATGTATTGCTGGGCTCGAGAGGATCAGTTCAAACAGTCGGAGTGTGTAAAGGTGTGTTTATAACCATTTCTGATTTATCAATTATACAAGAAGACTTTCTCCCTCTATCTTTGGCCAGCGCGGACGTCATTTTGGGAGTAGCTTTGGGGCAGATTACCTTCGATTATAGGCTGTCAACGATGGAATTCAAAGTTGAGGAATGGACAGTGCAGTTGCAAGGAGACCGGGGGCTGGTTAAATCTCAAATATCCTTGAAGTCTATGGCCAAGGCG

Coding sequence (CDS)

ATGGAGCTACAACTGCCAATTTCACCTTCCAAAGGGTATGATGTATTGCTGGGCTCGAGAGGATCAGTTCAAACAGTCGGAGTGTGTAAAGGTGTGTTTATAACCATTTCTGATTTATCAATTATACAAGAAGACTTTCTCCCTCTATCTTTGGCCAGCGCGGACGTCATTTTGGGAGTAGCTTTGGGGCAGATTACCTTCGATTATAGGCTGTCAACGATGGAATTCAAAGTTGAGGAATGGACAGTGCAGTTGCAAGGAGACCGGGGGCTGGTTAAATCTCAAATATCCTTGAAGTCTATGGCCAAGGCG

Protein sequence

MELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGVALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA

Homology

[Close]

BLAST of Bhi09G001061 vs. TAIR10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 3   LQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSL--ASADVILG 60
           L+LP S +    VLLG R  +QT+G C G+ + + ++  I E+FL L L     DVILG
Sbjct: 316 LKLPTSTTNQASVLLGQRQCIQTIGTCFGINLLVQEVE-INENFLLLDLTKTDVDVILG 373

[Close]

BLAST of Bhi09G001061 vs. TAIR10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 3   LQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLA--SADVILG 60
           L+LP S +    VLLG R  +Q+VG C G+ + + ++  I E+FL L LA    DVILG
Sbjct: 156 LKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVE-ITENFLLLDLAKTDVDVILG 213

[Close]

BLAST of Bhi09G001061 vs. TrEMBL
Match: tr|A5CAG1|A5CAG1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 40/107 (37.38%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +L LP++ +  Y+V++G+  SV+  G+C+GV I++  L+++ EDFLPL L + DVILG+ 
Sbjct: 32  QLALPLTTTTSYEVMMGTGISVKGKGICRGVCISMQGLTVV-EDFLPLELGNTDVILGMP 91

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
               LG +  ++++ TM+ K+ +  + L+GD  L + ++SLK+M +A
Sbjct: 92  WLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRIEVSLKAMTRA 137

[Close]

BLAST of Bhi09G001061 vs. TrEMBL
Match: tr|A0A087FZI0|A0A087FZI0_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina OX=50452 GN=AALP_AAs71112U000100 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 43/107 (40.19%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +L L +  +KGY V++G+  +VQ  G+CK V +++  LS++ + FLPL L SADVILG+ 
Sbjct: 271 QLGLRVEGTKGYGVVMGTGLTVQGQGICKEVELSVQGLSVVAQ-FLPLELGSADVILGMQ 330

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
              ++G +  +++L  + FKVE   V+LQG+ G+  S ++LK + KA
Sbjct: 331 WLESVGDMVCNWKLQKLSFKVEGRQVELQGNPGICCSPVTLKGLWKA 376

[Close]

BLAST of Bhi09G001061 vs. TrEMBL
Match: tr|F6GVT4|F6GVT4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 39/107 (36.45%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +L LP++    Y V++G   S++  G+C+GV I++  L+++ EDFLPL L + DVILG+ 
Sbjct: 82  QLALPLTTITSYGVMMGIGISMKGKGICRGVCISMQGLTVV-EDFLPLELGNTDVILGMP 141

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
               LG +  ++++ TM+ K+ +  + L+ D  L ++++SLK+MA+A
Sbjct: 142 WLGTLGDVKVNWKMLTMKIKMGKAVIVLKRDPSLSRTEVSLKAMARA 187

[Close]

BLAST of Bhi09G001061 vs. TrEMBL
Match: tr|A5B2I6|A5B2I6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 37/103 (35.92%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 2    ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
            +L LP++ +  Y V++G+  SV+  G+C+GV I++  L+++ EDFLPL L + DVILG+ 
Sbjct: 1090 QLTLPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVV-EDFLPLELGNTDVILGMP 1149

Query: 62   ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKS 101
                LG +  ++++ TM+ K+ +  + L+GD  L +++ S  S
Sbjct: 1150 WLGTLGDVKVNWKMLTMKIKMGKAVMVLKGDPSLSRTETSTTS 1191

[Close]

BLAST of Bhi09G001061 vs. TrEMBL
Match: tr|A0A087GAS3|A0A087GAS3_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 3   LQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV-- 62
           L+L    +KGY V+ G+  +VQ  G+CK V +++  L ++   FLPL L SADVILG+  
Sbjct: 423 LRLRTEETKGYGVVTGTGLTVQGQGICKAVELSLQGLLVVAH-FLPLELGSADVILGMQW 482

Query: 63  --ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
             ++G +  +++L  + FKVE   V+LQGD  +  S +++K + KA
Sbjct: 483 LESVGDMVCNWKLQKLSFKVEGRRVELQGDPCICCSPVTMKGLWKA 527

[Close]

BLAST of Bhi09G001061 vs. NCBI nr
Match: XP_021867096.1 (uncharacterized protein LOC110805782 [Spinacia oleracea])

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +L +PI+ S G+ V LG+  SV+  GVCKGV + ++D   IQEDFLPL L ++DVILG+ 
Sbjct: 492 KLGIPIADSAGFRVSLGNGESVKGKGVCKGVRMIVNDHIDIQEDFLPLELGNSDVILGIQ 551

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAK 104
               LG +  +++   M +++ E  V L+GD  L +S+ISLK+M K
Sbjct: 552 WLEKLGPVVTNWKTQVMTYQIGEVPVTLKGDPSLSRSRISLKAMMK 597

[Close]

BLAST of Bhi09G001061 vs. NCBI nr
Match: XP_022848903.1 (uncharacterized protein LOC111371244 [Olea europaea var. sylvestris])

HSP 1 Score: 82.8 bits (203), Expect = 7.5e-13
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +LQ+P  P+ GY +++G+  +V+  GVCKGV I++  + ++ +DFLPL L   DVILG+ 
Sbjct: 434 QLQIPTVPTHGYGIIMGTGSAVRGCGVCKGVVISLPSIEVV-DDFLPLKLGCTDVILGMK 493

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
               +G++  D+   TM+ KV    V LQGD  L K+Q S+K+M KA
Sbjct: 494 WLETVGKMQVDWGNLTMKIKVGGQVVTLQGDVSLQKAQGSVKAMVKA 539

[Close]

BLAST of Bhi09G001061 vs. NCBI nr
Match: XP_019105193.1 (PREDICTED: uncharacterized protein LOC109135022 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           EL+L IS + G+ V LG+  +V   GVC+GV + + ++  + EDFLPL L ++D+ILGV 
Sbjct: 509 ELELVISDAGGFGVSLGNGEAVHGTGVCQGVTLKLGEIE-VTEDFLPLGLGNSDLILGVQ 568

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
               LG +  +++   M+F+VE   V L+GD  L +S+ISL++M KA
Sbjct: 569 WLEKLGSVITNWKTQVMQFEVEGRVVTLRGDPSLARSKISLRAMIKA 614

[Close]

BLAST of Bhi09G001061 vs. NCBI nr
Match: XP_024030016.1 (uncharacterized protein LOC112094120 [Morus notabilis])

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 42/107 (39.25%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +++L +     Y V++G+  SV+  GVC+G+ +++ D+ I+ EDFLPL L S+D+ILG+ 
Sbjct: 188 KMELTVDKIGDYGVVMGTGLSVKGEGVCRGIVVSLQDIEIV-EDFLPLELGSSDIILGIQ 247

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
               LG +T ++R  TM+F V    V L+GD G+ ++ +SLK++ KA
Sbjct: 248 WLETLGVMTVNWRSLTMKFMVGNRQVTLKGDPGMNRTSVSLKALQKA 293

[Close]

BLAST of Bhi09G001061 vs. NCBI nr
Match: CAN66553.1 (hypothetical protein VITISV_018166 [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 6.4e-12
Identity = 40/107 (37.38%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 2   ELQLPISPSKGYDVLLGSRGSVQTVGVCKGVFITISDLSIIQEDFLPLSLASADVILGV- 61
           +L LP++ +  Y+V++G+  SV+  G+C+GV I++  L+++ EDFLPL L + DVILG+ 
Sbjct: 32  QLALPLTTTTSYEVMMGTGISVKGKGICRGVCISMQGLTVV-EDFLPLELGNTDVILGMP 91

Query: 62  ---ALGQITFDYRLSTMEFKVEEWTVQLQGDRGLVKSQISLKSMAKA 105
               LG +  ++++ TM+ K+ +  + L+GD  L + ++SLK+M +A
Sbjct: 92  WLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRIEVSLKAMTRA 137

The following BLAST results are available for this feature:

BLAST of Bhi09G001061 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G001061 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G30770.1	1.2e-04	42.37	Eukaryotic aspartyl protease family protein	[more]
AT3G29750.1	2.0e-04	44.07	Eukaryotic aspartyl protease family protein	[more]

BLAST of Bhi09G001061 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5CAG1\|A5CAG1_VITVI	4.2e-12	37.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018166 PE=4 SV=1	[more]
tr\|A0A087FZI0\|A0A087FZI0_ARAAL	2.1e-11	40.19	Uncharacterized protein (Fragment) OS=Arabis alpina OX=50452 GN=AALP_AAs71112U00...	[more]
tr\|F6GVT4\|F6GVT4_VITVI	1.4e-10	36.45	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0083g00660 PE=4 SV=...	[more]
tr\|A5B2I6\|A5B2I6_VITVI	2.6e-09	35.92	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1	[more]
tr\|A0A087GAS3\|A0A087GAS3_ARAAL	2.6e-09	38.68	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA8G317800 PE=4 SV=1	[more]

BLAST of Bhi09G001061 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021867096.1	2.0e-13	44.34	uncharacterized protein LOC110805782 [Spinacia oleracea]	[more]
XP_022848903.1	7.5e-13	42.06	uncharacterized protein LOC111371244 [Olea europaea var. sylvestris]	[more]
XP_019105193.1	2.2e-12	42.06	PREDICTED: uncharacterized protein LOC109135022 [Beta vulgaris subsp. vulgaris]	[more]
XP_024030016.1	4.9e-12	39.25	uncharacterized protein LOC112094120 [Morus notabilis]	[more]
CAN66553.1	6.4e-12	37.38	hypothetical protein VITISV_018166 [Vitis vinifera]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001061	Bhi09M001061	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G001061	Cucumber (Gy14) v1	cgywgoB778
Bhi09G001061	Cucumber (Gy14) v2	cgybwgoB674
Bhi09G001061	Cucurbita maxima (Rimu)	cmawgoB0493
Bhi09G001061	Cucurbita maxima (Rimu)	cmawgoB1130
Bhi09G001061	Cucurbita moschata (Rifu)	cmowgoB0492
Bhi09G001061	Cucurbita moschata (Rifu)	cmowgoB1128
Bhi09G001061	Cucurbita pepo (Zucchini)	cpewgoB0209
Bhi09G001061	Cucurbita pepo (Zucchini)	cpewgoB0421
Bhi09G001061	Wild cucumber (PI 183967)	cpiwgoB717
Bhi09G001061	Cucumber (Chinese Long) v3	cucwgoB731
Bhi09G001061	Cucumber (Chinese Long) v2	cuwgoB705
Bhi09G001061	Bottle gourd (USVL1VR-Ls)	lsiwgoB281
Bhi09G001061	Melon (DHL92) v3.6.1	medwgoB257
Bhi09G001061	Melon (DHL92) v3.5.1	mewgoB256
Bhi09G001061	Watermelon (Charleston Gray)	wcgwgoB062
Bhi09G001061	Watermelon (97103) v2	wgowmbB608
Bhi09G001061	Watermelon (97103) v1	wgowmB580
Bhi09G001061	Silver-seed gourd	carwgoB0015
Bhi09G001061	Silver-seed gourd	carwgoB0098