Bhi09G000965 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000965
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr9 : 28467410 .. 28469945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAAATGGAGAAATTGCAAAAAGAAAAAAAAGGAGGAAAAGAACTTTGGAGATGAGTTTTCAATTTAAAGATCTTTTAGTCTAGATTGCCCCTTAGGAACAAAAGAAAGCCCTAAAATGAAATGAAACACCCATCTAAAAACTTCAGATGGTGTGGAAGACACTGTCAATTTCTTCTAAAACCCCTTTTTCATCAACACATGGCTTCCAAGACGCTGCCTTCTGCTTCTTCCACTGTTTCAATTTCTTCCAAACCTAAGCTCTCCTCTCTATTTACTCAATCTCCCACAATTCCATCATCAATTCCCCAAATTTCCCCTTCAAATCATCCTAAATCCCCGCCCCAACCACTTCCATCACAGCAAAACTTCGATACACGGATTTCCTCTCAACACCGCCTTCCGACCTTCCTACAGAATTGCCGGACAGGTAAGATTACTGCAACTGAAGCATTACATTTCTTTCACCTCATGTTGCGTTCAAATCCTATCCCTCCCACGTCTTCATTCAATCTGTTACTTGGTGGACTTACTCAGATTAAGCATTATTCTCAAGTATTTTCTCTCTATAATAAAATGCGCCTTGCTGGACTTTTTCCTAATTTCTTCACGCTGAATATTTTGATTAATTGCCTTTGTAACGTGAATCGGGTTAGTGAAGGCTTTGCGGCCATGGCAGCGATTTTAAGGAGGGGTTATATTCCTGATAAAATCACATATTCCACCTTGGTTAAGGGCTTGTGTATGGAGCATAGGATTAGTGAAGCGACACGACTATTTATGAGAATGCATAAGTTAGGTTGTAGGCATGATGTGGTTACTTATGGAACTTTAATCAAGGGGCTCTGTCGAACGGGGAATATTAACATTGCACTTAAGTTGCATCAAGAAATGCTCAATGAAACTGGTCAATATGGGATTAATTGTAAGCCTGATGTTATTTGCTATAGTATCATCATAGATGGGCTTTGTAAGTATAGACGGGAAGATGAGGCAAGAGAACTTTTTGAGGAAATGAAAACTCAGGGAATGATTCCCGATGTCATTTCATATACCTCTTTGATTCATGGATTTTGCTGGGGTGAAAAGTGGGAGGAGGCTAAACGTTTGTTCAACGAGATGGTGGATCAAGGCGTTCGACCAAATGTGGTCACATTTAATGTGTTGATTGATATGCTTTGCAAGGAAGGTAAAGTTATCAAGGCTAAGGAGTTGCTTGACATGATGATTCAAAGAGGTATTGTTCCTGATTTGGTTACTTATACTTCACTGATTGAGGGGTTTTGTAAGGTTGGTGACTTGAATAGTGCCAGGGAGCTATTCATTAATATGCCTAGTAAGGGTTGTGAACCTGATGTGATTAGCTATACTATGCTAATCAACGGGTATTGTAAAACATTGAAGGTGAATGAAGCAATGAAGCTTTACAATGAAATGCTTCAAGTGGGAAAGAGGCCAAATGTGAAAACATATGGTGCCTTATTAACAGGGCTTTTTCAGGCAGGCAAGGTTGGTGATGCAAAGAAACTATTTGGTGTCATGAAAGCTTATGGTGTTGCCATAGATTCATGTATATATGGTATTTTCTTAGATGGGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGGAACTTTTTAATGAGCTAAAATCATACAACTTGAAATTGGACATTGGAATCTTTAATTGTCTAATTGATGGCCTATGTAAAGTAGGGACACTTGAAACTGCTTGGGAGCTTTTCAAAAAACTATCCCAAGAAGGGCTTCAACCAAATGTTGTGACTTACAACATTATGATCCATGGGTTTTGTAGAAAGGGACAAGTAGATAAGGCAAACATTTTGTTTCAACATATGGAAGAAAATGGTTGTACTCCCAATGTAATTACTTGTAATACGCTTCTGCGTGGTTTTTGCGAGAGTAATAAATCAAAGGAGGTGGTTGAACTTCTTCATAGGATGGTTCAAAGGGATGTGTCGCCAGATGTCAGGACTTGCACCATAGTCGTAGACATGCTTTGCAAAGACGAAAAATATCGAGAATGTATAGACTTGCTTCCAAGGTTTCCTGTCCAAAAGCGTTGATGTTGATAATAGAACACTTACTAGTAGACTCTTAGGACCTATATGATTTGCAAATTTCTAATCAGCTACATGAATGAACAACACATCGTTCATGGACTCGATAGGTTTCCACCTCTTTTCCTCTCTGTTTCACTTTCAATTCTTGTAGATTGCTTGCCTTTATAGATCCTAACTTTAATTTTCTGATGTGTTATTGGAATTTTAGGTGGATCATATATATTAATAGCAAACTAACCAACATGGAACAAATAAGTATGCCCTCTTAGTCATTGGATCAATTTTATATTCTTCAGTCTTCATTGTTTGTCTAATTTAGCTTATTGAATGTGTGCTTGATTGTAAGGATTAAAAATCTTATTAAATACTTTACTTTATCATTCACGTGGATTTTGTTTTAAATTAGGTTTTTATTTGATTTCTTTCTTCAAAACTCTATCAAATTTCGTTAAACG

mRNA sequence

CGAAAATGGAGAAATTGCAAAAAGAAAAAAAAGGAGGAAAAGAACTTTGGAGATGAGTTTTCAATTTAAAGATCTTTTAGTCTAGATTGCCCCTTAGGAACAAAAGAAAGCCCTAAAATGAAATGAAACACCCATCTAAAAACTTCAGATGGTGTGGAAGACACTGTCAATTTCTTCTAAAACCCCTTTTTCATCAACACATGGCTTCCAAGACGCTGCCTTCTGCTTCTTCCACTGTTTCAATTTCTTCCAAACCTAAGCTCTCCTCTCTATTTACTCAATCTCCCACAATTCCATCATCAATTCCCCAAATTTCCCCTTCAAATCATCCTAAATCCCCGCCCCAACCACTTCCATCACAGCAAAACTTCGATACACGGATTTCCTCTCAACACCGCCTTCCGACCTTCCTACAGAATTGCCGGACAGGTAAGATTACTGCAACTGAAGCATTACATTTCTTTCACCTCATGTTGCGTTCAAATCCTATCCCTCCCACGTCTTCATTCAATCTGTTACTTGGTGGACTTACTCAGATTAAGCATTATTCTCAAGTATTTTCTCTCTATAATAAAATGCGCCTTGCTGGACTTTTTCCTAATTTCTTCACGCTGAATATTTTGATTAATTGCCTTTGTAACGTGAATCGGGTTAGTGAAGGCTTTGCGGCCATGGCAGCGATTTTAAGGAGGGGTTATATTCCTGATAAAATCACATATTCCACCTTGGTTAAGGGCTTGTGTATGGAGCATAGGATTAGTGAAGCGACACGACTATTTATGAGAATGCATAAGTTAGGTTGTAGGCATGATGTGGTTACTTATGGAACTTTAATCAAGGGGCTCTGTCGAACGGGGAATATTAACATTGCACTTAAGTTGCATCAAGAAATGCTCAATGAAACTGGTCAATATGGGATTAATTGTAAGCCTGATGTTATTTGCTATAGTATCATCATAGATGGGCTTTGTAAGTATAGACGGGAAGATGAGGCAAGAGAACTTTTTGAGGAAATGAAAACTCAGGGAATGATTCCCGATGTCATTTCATATACCTCTTTGATTCATGGATTTTGCTGGGGTGAAAAGTGGGAGGAGGCTAAACGTTTGTTCAACGAGATGGTGGATCAAGGCGTTCGACCAAATGTGGTCACATTTAATGTGTTGATTGATATGCTTTGCAAGGAAGGTAAAGTTATCAAGGCTAAGGAGTTGCTTGACATGATGATTCAAAGAGGTATTGTTCCTGATTTGGTTACTTATACTTCACTGATTGAGGGGTTTTGTAAGGTTGGTGACTTGAATAGTGCCAGGGAGCTATTCATTAATATGCCTAGTAAGGGTTGTGAACCTGATGTGATTAGCTATACTATGCTAATCAACGGGTATTGTAAAACATTGAAGGTGAATGAAGCAATGAAGCTTTACAATGAAATGCTTCAAGTGGGAAAGAGGCCAAATGTGAAAACATATGGTGCCTTATTAACAGGGCTTTTTCAGGCAGGCAAGGTTGGTGATGCAAAGAAACTATTTGGTGTCATGAAAGCTTATGGTGTTGCCATAGATTCATGTATATATGGTATTTTCTTAGATGGGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGGAACTTTTTAATGAGCTAAAATCATACAACTTGAAATTGGACATTGGAATCTTTAATTGTCTAATTGATGGCCTATGTAAAGTAGGGACACTTGAAACTGCTTGGGAGCTTTTCAAAAAACTATCCCAAGAAGGGCTTCAACCAAATGTTGTGACTTACAACATTATGATCCATGGGTTTTGTAGAAAGGGACAAGTAGATAAGGCAAACATTTTGTTTCAACATATGGAAGAAAATGGTTGTACTCCCAATGTAATTACTTGTAATACGCTTCTGCGTGGTTTTTGCGAGAGTAATAAATCAAAGGAGGTGGTTGAACTTCTTCATAGGATGGTTCAAAGGGATGTGTCGCCAGATGTCAGGACTTGCACCATAGTCGTAGACATGCTTTGCAAAGACGAAAAATATCGAGAATGTATAGACTTGCTTCCAAGGTTTCCTGTCCAAAAGCGTTGATGTTGATAATAGAACACTTACTAGTAGACTCTTAGGACCTATATGATTTGCAAATTTCTAATCAGCTACATGAATGAACAACACATCGTTCATGGACTCGATAGGTTTCCACCTCTTTTCCTCTCTGTTTCACTTTCAATTCTTGTAGATTGCTTGCCTTTATAGATCCTAACTTTAATTTTCTGATGTGTTATTGGAATTTTAGGTGGATCATATATATTAATAGCAAACTAACCAACATGGAACAAATAAGTATGCCCTCTTAGTCATTGGATCAATTTTATATTCTTCAGTCTTCATTGTTTGTCTAATTTAGCTTATTGAATGTGTGCTTGATTGTAAGGATTAAAAATCTTATTAAATACTTTACTTTATCATTCACGTGGATTTTGTTTTAAATTAGGTTTTTATTTGATTTCTTTCTTCAAAACTCTATCAAATTTCGTTAAACG

Coding sequence (CDS)

ATGAAACACCCATCTAAAAACTTCAGATGGTGTGGAAGACACTGTCAATTTCTTCTAAAACCCCTTTTTCATCAACACATGGCTTCCAAGACGCTGCCTTCTGCTTCTTCCACTGTTTCAATTTCTTCCAAACCTAAGCTCTCCTCTCTATTTACTCAATCTCCCACAATTCCATCATCAATTCCCCAAATTTCCCCTTCAAATCATCCTAAATCCCCGCCCCAACCACTTCCATCACAGCAAAACTTCGATACACGGATTTCCTCTCAACACCGCCTTCCGACCTTCCTACAGAATTGCCGGACAGGTAAGATTACTGCAACTGAAGCATTACATTTCTTTCACCTCATGTTGCGTTCAAATCCTATCCCTCCCACGTCTTCATTCAATCTGTTACTTGGTGGACTTACTCAGATTAAGCATTATTCTCAAGTATTTTCTCTCTATAATAAAATGCGCCTTGCTGGACTTTTTCCTAATTTCTTCACGCTGAATATTTTGATTAATTGCCTTTGTAACGTGAATCGGGTTAGTGAAGGCTTTGCGGCCATGGCAGCGATTTTAAGGAGGGGTTATATTCCTGATAAAATCACATATTCCACCTTGGTTAAGGGCTTGTGTATGGAGCATAGGATTAGTGAAGCGACACGACTATTTATGAGAATGCATAAGTTAGGTTGTAGGCATGATGTGGTTACTTATGGAACTTTAATCAAGGGGCTCTGTCGAACGGGGAATATTAACATTGCACTTAAGTTGCATCAAGAAATGCTCAATGAAACTGGTCAATATGGGATTAATTGTAAGCCTGATGTTATTTGCTATAGTATCATCATAGATGGGCTTTGTAAGTATAGACGGGAAGATGAGGCAAGAGAACTTTTTGAGGAAATGAAAACTCAGGGAATGATTCCCGATGTCATTTCATATACCTCTTTGATTCATGGATTTTGCTGGGGTGAAAAGTGGGAGGAGGCTAAACGTTTGTTCAACGAGATGGTGGATCAAGGCGTTCGACCAAATGTGGTCACATTTAATGTGTTGATTGATATGCTTTGCAAGGAAGGTAAAGTTATCAAGGCTAAGGAGTTGCTTGACATGATGATTCAAAGAGGTATTGTTCCTGATTTGGTTACTTATACTTCACTGATTGAGGGGTTTTGTAAGGTTGGTGACTTGAATAGTGCCAGGGAGCTATTCATTAATATGCCTAGTAAGGGTTGTGAACCTGATGTGATTAGCTATACTATGCTAATCAACGGGTATTGTAAAACATTGAAGGTGAATGAAGCAATGAAGCTTTACAATGAAATGCTTCAAGTGGGAAAGAGGCCAAATGTGAAAACATATGGTGCCTTATTAACAGGGCTTTTTCAGGCAGGCAAGGTTGGTGATGCAAAGAAACTATTTGGTGTCATGAAAGCTTATGGTGTTGCCATAGATTCATGTATATATGGTATTTTCTTAGATGGGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGGAACTTTTTAATGAGCTAAAATCATACAACTTGAAATTGGACATTGGAATCTTTAATTGTCTAATTGATGGCCTATGTAAAGTAGGGACACTTGAAACTGCTTGGGAGCTTTTCAAAAAACTATCCCAAGAAGGGCTTCAACCAAATGTTGTGACTTACAACATTATGATCCATGGGTTTTGTAGAAAGGGACAAGTAGATAAGGCAAACATTTTGTTTCAACATATGGAAGAAAATGGTTGTACTCCCAATGTAATTACTTGTAATACGCTTCTGCGTGGTTTTTGCGAGAGTAATAAATCAAAGGAGGTGGTTGAACTTCTTCATAGGATGGTTCAAAGGGATGTGTCGCCAGATGTCAGGACTTGCACCATAGTCGTAGACATGCTTTGCAAAGACGAAAAATATCGAGAATGTATAGACTTGCTTCCAAGGTTTCCTGTCCAAAAGCGTTGA

Protein sequence

MKHPSKNFRWCGRHCQFLLKPLFHQHMASKTLPSASSTVSISSKPKLSSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRISSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHYSQVFSLYNKMRLAGLFPNFFTLNILINCLCNVNRVSEGFAAMAAILRRGYIPDKITYSTLVKGLCMEHRISEATRLFMRMHKLGCRHDVVTYGTLIKGLCRTGNINIALKLHQEMLNETGQYGINCKPDVICYSIIIDGLCKYRREDEARELFEEMKTQGMIPDVISYTSLIHGFCWGEKWEEAKRLFNEMVDQGVRPNVVTFNVLIDMLCKEGKVIKAKELLDMMIQRGIVPDLVTYTSLIEGFCKVGDLNSARELFINMPSKGCEPDVISYTMLINGYCKTLKVNEAMKLYNEMLQVGKRPNVKTYGALLTGLFQAGKVGDAKKLFGVMKAYGVAIDSCIYGIFLDGLCKNGCLFEAMELFNELKSYNLKLDIGIFNCLIDGLCKVGTLETAWELFKKLSQEGLQPNVVTYNIMIHGFCRKGQVDKANILFQHMEENGCTPNVITCNTLLRGFCESNKSKEVVELLHRMVQRDVSPDVRTCTIVVDMLCKDEKYRECIDLLPRFPVQKR

Homology

[Close]

BLAST of Bhi09G000965 vs. TrEMBL
Match: tr|A0A0A0K7C1|A0A0A0K7C1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230920 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-23
Identity = 74/124 (59.68%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 29  SKTLPSASSTVSISSKPKL-SSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRI 88
           + ++ SASS V+ISSK KL SSLFT SPTIPSS PQIS +NHPK       S      RI
Sbjct: 5   ANSVASASSIVAISSKAKLFSSLFTHSPTIPSSNPQISSANHPK-------SLHALSERI 64

Query: 89  SSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHYSQVFS 148
           S QH LP F+ NC+ G IT+T+AL FF LM+RS       SFNLLLG L +IKHYSQVFS
Sbjct: 65  SLQHGLPMFIHNCKKGNITSTQALQFFDLMMRS-----IISFNLLLGALAKIKHYSQVFS 116

Query: 149 LYNK 152
           LY K
Sbjct: 125 LYKK 116

[Close]

BLAST of Bhi09G000965 vs. TrEMBL
Match: tr|A0A1S4DYL3|A0A1S4DYL3_CUCME (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 72/115 (62.61%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 29  SKTLPSASSTVSISSKPKL-SSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRI 88
           SKT+PSASS V    +P L SSLFT SP IPSS PQ S   HPKS      S QNF+T I
Sbjct: 5   SKTVPSASSIV----RPNLSSSLFTHSPIIPSSNPQFSSPIHPKSLH---VSPQNFNTPI 64

Query: 89  SSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHY 143
           S Q +L  FL NC+TG ITAT+A HFFHLM+ SNP PP SSF  LL GLT+IKHY
Sbjct: 65  SCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHY 112

[Close]

BLAST of Bhi09G000965 vs. TrEMBL
Match: tr|A0A0A0K5F6|A0A0A0K5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.2e-21
Identity = 70/115 (60.87%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 29  SKTLPSASSTVSISSKPKL-SSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRI 88
           SKT+PSASS V    KP L SSLFT SPTIPSS P  S + H KS      S QNF+T I
Sbjct: 5   SKTVPSASSIV----KPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLN---VSPQNFNTPI 64

Query: 89  SSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHY 143
           S Q +L  FL NC+TG ITAT+A  FFHLM+ SNP PP SSF  LL GL +IKHY
Sbjct: 65  SFQQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHY 112

[Close]

BLAST of Bhi09G000965 vs. TrEMBL
Match: tr|A0A0A0K5M0|A0A0A0K5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.0e-20
Identity = 71/118 (60.17%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 27  MASKT-LPSASSTVSISSKPKLSSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDT 86
           M SKT LPSA      S KP LS L T S TIPSSIPQ S +NHP +    LP+  N   
Sbjct: 1   MHSKTLLPSA------SFKPNLSPLCTLSSTIPSSIPQTSSTNHPNT---VLPAAFN-RK 60

Query: 87  RISSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHYS 144
            IS  H L  FL+NC+TG ITAT+A HFF LMLRS PIPP SSFN LLGGL +I HYS
Sbjct: 61  GISFHHPLSLFLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYS 108

[Close]

BLAST of Bhi09G000965 vs. TrEMBL
Match: tr|A0A0A0K784|A0A0A0K784_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.1e-20
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 32  LPSASSTVSISSKPKLSSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRISSQH 91
           +PS +   S S KP LS L T S TIPSSIPQ S ++HP      LP+  N +  IS  H
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPN---PILPAAFNRE-EISFHH 60

Query: 92  RLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHYSQV 146
            L  FL+NC+TG ITA +A HFF LM+RS+PIPP SSFN LLGGL +I HYSQ+
Sbjct: 61  PLSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL 110

[Close]

BLAST of Bhi09G000965 vs. NCBI nr
Match: KGN44217.1 (hypothetical protein Csa_7G230920 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 4.6e-23
Identity = 74/124 (59.68%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 29  SKTLPSASSTVSISSKPKL-SSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRI 88
           + ++ SASS V+ISSK KL SSLFT SPTIPSS PQIS +NHPK       S      RI
Sbjct: 5   ANSVASASSIVAISSKAKLFSSLFTHSPTIPSSNPQISSANHPK-------SLHALSERI 64

Query: 89  SSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHYSQVFS 148
           S QH LP F+ NC+ G IT+T+AL FF LM+RS       SFNLLLG L +IKHYSQVFS
Sbjct: 65  SLQHGLPMFIHNCKKGNITSTQALQFFDLMMRS-----IISFNLLLGALAKIKHYSQVFS 116

Query: 149 LYNK 152
           LY K
Sbjct: 125 LYKK 116

[Close]

BLAST of Bhi09G000965 vs. NCBI nr
Match: XP_016901072.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-22
Identity = 72/115 (62.61%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 29  SKTLPSASSTVSISSKPKL-SSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRI 88
           SKT+PSASS V    +P L SSLFT SP IPSS PQ S   HPKS      S QNF+T I
Sbjct: 5   SKTVPSASSIV----RPNLSSSLFTHSPIIPSSNPQFSSPIHPKSLH---VSPQNFNTPI 64

Query: 89  SSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHY 143
           S Q +L  FL NC+TG ITAT+A HFFHLM+ SNP PP SSF  LL GLT+IKHY
Sbjct: 65  SCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHY 112

[Close]

BLAST of Bhi09G000965 vs. NCBI nr
Match: XP_022155826.1 (pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-22
Identity = 73/130 (56.15%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 27  MASKTLPSASSTVSISS----KPKLSSLFTQSPTIPSSIPQISPSNHPKSPP-------- 86
           M SK++ SASS V++SS    K KLSSLFTQSP I SS PQ+SP +  K PP        
Sbjct: 1   MVSKSVASASSVVAVSSSAPAKGKLSSLFTQSPRIRSSNPQVSPGSSSKRPPLLSRPPKP 60

Query: 87  --QPLPSQQNFDTRISSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLL 143
              P  S +   T IS Q R  TFLQNC+TG +TA EAL FF LMLR+ P P  SSFNLL
Sbjct: 61  TVSPEDSPEELTTGISFQDRHRTFLQNCKTGNVTAAEALQFFDLMLRTKPTPAMSSFNLL 120

[Close]

BLAST of Bhi09G000965 vs. NCBI nr
Match: XP_011659273.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-21
Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 32  LPSASSTVSISSKPKLSSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRISSQH 91
           +PS +   S S KP LS L T S TIPSSIPQ S ++HP      LP+  N +  IS  H
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPN---PILPAAFNRE-EISFHH 60

Query: 92  RLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHYSQVFS 148
            L  FL+NC+TG ITA +A HFF LM+RS+PIPP SSFN LLGGL +I HYSQ+FS
Sbjct: 61  PLSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFS 112

[Close]

BLAST of Bhi09G000965 vs. NCBI nr
Match: KGN44728.1 (hypothetical protein Csa_7G374710 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-20
Identity = 70/115 (60.87%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 29  SKTLPSASSTVSISSKPKL-SSLFTQSPTIPSSIPQISPSNHPKSPPQPLPSQQNFDTRI 88
           SKT+PSASS V    KP L SSLFT SPTIPSS P  S + H KS      S QNF+T I
Sbjct: 5   SKTVPSASSIV----KPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLN---VSPQNFNTPI 64

Query: 89  SSQHRLPTFLQNCRTGKITATEALHFFHLMLRSNPIPPTSSFNLLLGGLTQIKHY 143
           S Q +L  FL NC+TG ITAT+A  FFHLM+ SNP PP SSF  LL GL +IKHY
Sbjct: 65  SFQQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHY 112

The following BLAST results are available for this feature:

BLAST of Bhi09G000965 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G000965 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G000965 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7C1\|A0A0A0K7C1_CUCSA	3.0e-23	59.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230920 PE=4 SV=1	[more]
tr\|A0A1S4DYL3\|A0A1S4DYL3_CUCME	1.1e-22	62.61	pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis...	[more]
tr\|A0A0A0K5F6\|A0A0A0K5F6_CUCSA	8.2e-21	60.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1	[more]
tr\|A0A0A0K5M0\|A0A0A0K5M0_CUCSA	7.0e-20	60.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1	[more]
tr\|A0A0A0K784\|A0A0A0K784_CUCSA	9.1e-20	56.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1	[more]

BLAST of Bhi09G000965 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44217.1	4.6e-23	59.68	hypothetical protein Csa_7G230920 [Cucumis sativus]	[more]
XP_016901072.1	1.7e-22	62.61	PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3...	[more]
XP_022155826.1	2.3e-22	56.15	pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia]	[more]
XP_011659273.1	9.5e-21	56.90	PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-...	[more]
KGN44728.1	1.2e-20	60.87	hypothetical protein Csa_7G374710 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000965	Bhi09M000965	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 512..542 e-value: 8.7E-7 score: 28.4 coord: 267..299 e-value: 4.7E-11 score: 42.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 197..230 e-value: 1.1E-6 score: 26.4 coord: 588..622 e-value: 6.8E-8 score: 30.2 coord: 484..516 e-value: 2.8E-6 score: 25.2 coord: 449..481 e-value: 4.8E-5 score: 21.3 coord: 553..587 e-value: 1.3E-10 score: 38.8 coord: 273..307 e-value: 7.0E-10 score: 36.5 coord: 162..195 e-value: 7.0E-4 score: 17.6 coord: 413..447 e-value: 7.3E-8 score: 30.1 coord: 343..376 e-value: 7.2E-10 score: 36.4 coord: 519..552 e-value: 6.8E-7 score: 27.1 coord: 378..412 e-value: 3.7E-9 score: 34.2 coord: 308..342 e-value: 2.7E-8 score: 31.5 coord: 232..259 e-value: 1.3E-5 score: 23.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 375..424 e-value: 4.3E-18 score: 65.1 coord: 126..173 e-value: 1.3E-9 score: 38.0 coord: 194..243 e-value: 2.6E-14 score: 53.0 coord: 550..598 e-value: 1.5E-20 score: 73.0 coord: 305..354 e-value: 8.3E-19 score: 67.4 coord: 445..494 e-value: 1.9E-9 score: 37.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 411..445 score: 12.518
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 376..410 score: 13.548
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 621..653 score: 6.281
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 125..159 score: 8.583
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 481..515 score: 10.052
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 195..229 score: 11.027
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 516..550 score: 12.244
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 271..305 score: 13.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 230..260 score: 10.808
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 446..480 score: 10.084
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 306..340 score: 13.526
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 551..585 score: 14.524
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 341..375 score: 13.23
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 586..620 score: 11.838
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 160..194 score: 9.197
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 442..511 e-value: 6.9E-16 score: 60.3 coord: 512..578 e-value: 2.2E-23 score: 84.7 coord: 579..648 e-value: 1.5E-16 score: 62.4 coord: 367..441 e-value: 8.9E-25 score: 89.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 263..359 e-value: 2.1E-34 score: 120.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 100..262 e-value: 2.6E-35 score: 124.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..82
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 289..481 coord: 100..291 coord: 427..638 coord: 268..358
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 275..473

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G000965	Cucumber (Gy14) v1	cgywgoB778
Bhi09G000965	Cucumber (Gy14) v2	cgybwgoB667
Bhi09G000965	Cucumber (Gy14) v2	cgybwgoB674
Bhi09G000965	Cucurbita maxima (Rimu)	cmawgoB0493
Bhi09G000965	Cucurbita maxima (Rimu)	cmawgoB1130
Bhi09G000965	Cucurbita moschata (Rifu)	cmowgoB0492
Bhi09G000965	Cucurbita moschata (Rifu)	cmowgoB1128
Bhi09G000965	Cucurbita pepo (Zucchini)	cpewgoB0209
Bhi09G000965	Cucurbita pepo (Zucchini)	cpewgoB0416
Bhi09G000965	Wild cucumber (PI 183967)	cpiwgoB710
Bhi09G000965	Wild cucumber (PI 183967)	cpiwgoB717
Bhi09G000965	Cucumber (Chinese Long) v3	cucwgoB726
Bhi09G000965	Cucumber (Chinese Long) v3	cucwgoB731
Bhi09G000965	Cucumber (Chinese Long) v2	cuwgoB698
Bhi09G000965	Cucumber (Chinese Long) v2	cuwgoB705
Bhi09G000965	Bottle gourd (USVL1VR-Ls)	lsiwgoB281
Bhi09G000965	Melon (DHL92) v3.6.1	medwgoB244
Bhi09G000965	Melon (DHL92) v3.6.1	medwgoB248
Bhi09G000965	Melon (DHL92) v3.6.1	medwgoB260
Bhi09G000965	Melon (DHL92) v3.5.1	mewgoB244
Bhi09G000965	Melon (DHL92) v3.5.1	mewgoB259
Bhi09G000965	Watermelon (Charleston Gray)	wcgwgoB062
Bhi09G000965	Watermelon (97103) v2	wgowmbB608
Bhi09G000965	Watermelon (97103) v1	wgowmB580
Bhi09G000965	Silver-seed gourd	carwgoB0015