Bhi09G000788 (gene) Wax gourd

Overview
NameBhi09G000788
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRibonuclease
Locationchr9 : 21538037 .. 21538562 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGCAATATCCAGTCCCAAAATGGGCTTCCACGCCTTGTATAATGGGCATCGATGAAGCTGGTGGAGGCCCTATTTTAGGTTTTCTATGTTCCTATTCGTTTCGTTCCATTTCTGCCTCTTTAATTCCGCTTCGATCATCATATTTTGGGATATGATTTTGAATACTCTTTTCTTTATGAAATATCACTACATTTGATGATCTCAGGGACAATGGTGTATGGATGCTTGTACTGCGCCAGTTCATATTTGAAAGAACTTTCGTCTTTGATTTTTGCAGGTTTAGCTTCTTGCTCCTATGATTTTCTTTTAACTGTTGTTCATCATATCTCTATTTCGTTTACTTTTCTTCCAACTTGTGATGTGTTGCCTTTAGACTCAAAAACTTTGAAAGAAGAGAAGAAGGAGGAATTGTTTGAAGATTTGAAGTCTAACGAGACAATTGGATGGGCTGTTAATGTCATAGATCCTCGAGAACTTTCATCTAAAATGCTAAATAAGTCAATCTTCAGTGGTTTATAA

mRNA sequence

ATGTCTTCGCAATATCCAGTCCCAAAATGGGCTTCCACGCCTTGTATAATGGGCATCGATGAAGCTGGTGGAGGCCCTATTTTAGGGACAATGGTGTATGGATGCTTGTACTGCGCCAGTTCATATTTGAAAGAACTTTCGTCTTTGATTTTTGCAGGTTTAGCTTCTTGCTCCTATGATTTTCTTTTAACTGTTGTTCATCATATCTCTATTTCGTTTACTTTTCTTCCAACTTGTGATGTGTTGCCTTTAGACTCAAAAACTTTGAAAGAAGAGAAGAAGGAGGAATTGTTTGAAGATTTGAAGTCTAACGAGACAATTGGATGGGCTGTTAATGTCATAGATCCTCGAGAACTTTCATCTAAAATGCTAAATAAGTCAATCTTCAGTGGTTTATAA

Coding sequence (CDS)

ATGTCTTCGCAATATCCAGTCCCAAAATGGGCTTCCACGCCTTGTATAATGGGCATCGATGAAGCTGGTGGAGGCCCTATTTTAGGGACAATGGTGTATGGATGCTTGTACTGCGCCAGTTCATATTTGAAAGAACTTTCGTCTTTGATTTTTGCAGGTTTAGCTTCTTGCTCCTATGATTTTCTTTTAACTGTTGTTCATCATATCTCTATTTCGTTTACTTTTCTTCCAACTTGTGATGTGTTGCCTTTAGACTCAAAAACTTTGAAAGAAGAGAAGAAGGAGGAATTGTTTGAAGATTTGAAGTCTAACGAGACAATTGGATGGGCTGTTAATGTCATAGATCCTCGAGAACTTTCATCTAAAATGCTAAATAAGTCAATCTTCAGTGGTTTATAA

Protein sequence

MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYDFLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELSSKMLNKSIFSGL
Homology
[Close]
BLAST of Bhi09G000788 vs. Swiss-Prot
Match: sp|Q9SEZ6|RNH2A_ARATH (Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 7.9e-27
Identity = 64/127 (50.39%), Postives = 79/127 (62.20%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           M S+   P+WAS PC+MGIDEAG GP+LG MVYGC+YC  SY   L+SL FA        
Sbjct: 1   MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EEL+E LK ++++GWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELS 95

Query: 121 SKMLNKS 128
           +KML K+
Sbjct: 121 AKMLAKN 95

[Close]
BLAST of Bhi09G000788 vs. Swiss-Prot
Match: sp|O75792|RNH2A_HUMAN (Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-11
Identity = 40/122 (32.79%), Postives = 58/122 (47.54%), Query Frame = 0 

Query: 6   PVPK-WASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYDFLLT 65
           PVP      PC++G+DEAG GP+LG MVY   YC    L +L +L  A            
Sbjct: 19  PVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVA------------ 78

Query: 66  VVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELSSKML 125
                               DSKTL E ++E LF  ++  + +GWA++V+ P  +S+ ML
Sbjct: 79  --------------------DSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSML 108

Query: 126 NK 127
            +
Sbjct: 139 GR 108

[Close]
BLAST of Bhi09G000788 vs. Swiss-Prot
Match: sp|Q2TBT5|RNH2A_BOVIN (Ribonuclease H2 subunit A OS=Bos taurus OX=9913 GN=RNASEH2A PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-11
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           +SS  P P     PC++G+DEAG GP+LG MVY   YC  S L++L +L  A        
Sbjct: 16  LSSPVP-PVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVA-------- 75

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSN-ETIGWAVNVIDPREL 120
                                   DSKTL E +++ LF  ++ + + +GWA++V+ P  +
Sbjct: 76  ------------------------DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLI 109

Query: 121 SSKMLNK 127
           S+ ML +
Sbjct: 136 STSMLGR 109

[Close]
BLAST of Bhi09G000788 vs. Swiss-Prot
Match: sp|Q9CWY8|RNH2A_MOUSE (Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 0 

Query: 6   PVPK-WASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYDFLLT 65
           PVP      PC++G+DEAG GP+LG MVY   YC  S L +L +L  A            
Sbjct: 19  PVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVA------------ 78

Query: 66  VVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSN-ETIGWAVNVIDPRELSSKM 125
                               DSKTL E ++E LF  ++ + + +GWA++V+ P  +S+ M
Sbjct: 79  --------------------DSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSM 109

Query: 126 LNK 127
           L +
Sbjct: 139 LGR 109

[Close]
BLAST of Bhi09G000788 vs. Swiss-Prot
Match: sp|Q5U209|RNH2A_RAT (Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 0 

Query: 6   PVPK-WASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYDFLLT 65
           PVP      PC++G+DEAG GP+LG MVY   YC  S L +L +L  A            
Sbjct: 19  PVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVA------------ 78

Query: 66  VVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSN-ETIGWAVNVIDPRELSSKM 125
                               DSKTL E ++E LF  ++ + + +GWA++++ P  +S+ M
Sbjct: 79  --------------------DSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSM 109

Query: 126 LNK 127
           L +
Sbjct: 139 LGR 109

[Close]
BLAST of Bhi09G000788 vs. TAIR10
Match: AT2G25100.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-28
Identity = 64/127 (50.39%), Postives = 79/127 (62.20%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           M S+   P+WAS PC+MGIDEAG GP+LG MVYGC+YC  SY   L+SL FA        
Sbjct: 1   MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EEL+E LK ++++GWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELS 95

Query: 121 SKMLNKS 128
           +KML K+
Sbjct: 121 AKMLAKN 95

[Close]
BLAST of Bhi09G000788 vs. TrEMBL
Match: tr|A0A1S3BXP1|A0A1S3BXP1_CUCME (Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33
Identity = 80/126 (63.49%), Postives = 87/126 (69.05%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MS Q  +PKWAS PC+MGIDEAG GP+LG MVYGCLYCASSYLKELSSL FA        
Sbjct: 1   MSLQDSLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFEDLK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

[Close]
BLAST of Bhi09G000788 vs. TrEMBL
Match: tr|A0A0A0KTZ4|A0A0A0KTZ4_CUCSA (Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-33
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MSSQ  +PKW S PC+MGIDEAG GP+LG MVYGCLYCASSYLK+LSSL FA        
Sbjct: 1   MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFEDLK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

[Close]
BLAST of Bhi09G000788 vs. TrEMBL
Match: tr|A0A0B0NKK6|A0A0B0NKK6_GOSAR (Ribonuclease OS=Gossypium arboreum OX=29729 GN=F383_18865 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.7e-30
Identity = 73/127 (57.48%), Postives = 86/127 (67.72%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           M S+ P+PKWASTPCIMGIDEAG GP+LG MVYGCLYCA SY K L+SL FA        
Sbjct: 1   MGSEAPLPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLASLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFE+LK++E+IGW+V+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFENLKADESIGWSVDVIDPRELS 95

Query: 121 SKMLNKS 128
           +KML K+
Sbjct: 121 AKMLKKN 95

[Close]
BLAST of Bhi09G000788 vs. TrEMBL
Match: tr|A0A1U8J799|A0A1U8J799_GOSHI (Ribonuclease OS=Gossypium hirsutum OX=3635 GN=LOC107904365 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.7e-30
Identity = 73/127 (57.48%), Postives = 86/127 (67.72%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           M S+ P+PKWASTPCIMGIDEAG GP+LG MVYGCLYCA SY K L+SL FA        
Sbjct: 1   MGSEAPLPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLASLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFE+LK++E+IGW+V+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFENLKADESIGWSVDVIDPRELS 95

Query: 121 SKMLNKS 128
           +KML K+
Sbjct: 121 AKMLKKN 95

[Close]
BLAST of Bhi09G000788 vs. TrEMBL
Match: tr|A0A2P5W9S1|A0A2P5W9S1_GOSBA (Ribonuclease OS=Gossypium barbadense OX=3634 GN=GOBAR_AA32881 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.7e-30
Identity = 73/127 (57.48%), Postives = 86/127 (67.72%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           M S+ P+PKWASTPCIMGIDEAG GP+LG MVYGCLYCA SY K L+SL FA        
Sbjct: 1   MGSEAPLPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLASLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFE+LK++E+IGW+V+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFENLKADESIGWSVDVIDPRELS 95

Query: 121 SKMLNKS 128
           +KML K+
Sbjct: 121 AKMLKKN 95

[Close]
BLAST of Bhi09G000788 vs. NCBI nr
Match: XP_022145114.1 (ribonuclease H2 subunit A [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 80/126 (63.49%), Postives = 89/126 (70.63%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MSSQ P+PKWAS PC+MGIDEAG GP+LG MVYGCLYCASSYL+ELSSL FA        
Sbjct: 1   MSSQEPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLEELSSLSFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFE+LK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFENLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

[Close]
BLAST of Bhi09G000788 vs. NCBI nr
Match: XP_008453982.1 (PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-33
Identity = 80/126 (63.49%), Postives = 87/126 (69.05%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MS Q  +PKWAS PC+MGIDEAG GP+LG MVYGCLYCASSYLKELSSL FA        
Sbjct: 1   MSLQDSLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFEDLK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

[Close]
BLAST of Bhi09G000788 vs. NCBI nr
Match: XP_004152096.1 (PREDICTED: ribonuclease H2 subunit A [Cucumis sativus] >KGN53090.1 hypothetical protein Csa_4G015800 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MSSQ  +PKW S PC+MGIDEAG GP+LG MVYGCLYCASSYLK+LSSL FA        
Sbjct: 1   MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFEDLK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

[Close]
BLAST of Bhi09G000788 vs. NCBI nr
Match: XP_022979887.1 (ribonuclease H2 subunit A [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 79/126 (62.70%), Postives = 86/126 (68.25%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MSSQ P+PKWAS PC+MGIDEAG GP+LG MVYGCLYC  SYLKELSSL FA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFE LK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFEGLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

[Close]
BLAST of Bhi09G000788 vs. NCBI nr
Match: XP_023527419.1 (ribonuclease H2 subunit A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 79/126 (62.70%), Postives = 86/126 (68.25%), Query Frame = 0 

Query: 1   MSSQYPVPKWASTPCIMGIDEAGGGPILGTMVYGCLYCASSYLKELSSLIFAGLASCSYD 60
           MSSQ P+PKWAS PC+MGIDEAG GP+LG MVYGCLYC  SYLKELSSL FA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  FLLTVVHHISISFTFLPTCDVLPLDSKTLKEEKKEELFEDLKSNETIGWAVNVIDPRELS 120
                                   DSKTLKEEK+EELFE LK+NE+IGWAV+VIDPRELS
Sbjct: 61  ------------------------DSKTLKEEKREELFEGLKANESIGWAVDVIDPRELS 94

Query: 121 SKMLNK 127
           SKMLNK
Sbjct: 121 SKMLNK 94

The following BLAST results are available for this feature:
BLAST of Bhi09G000788 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SEZ6|RNH2A_ARATH7.9e-2750.39Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2[more]
sp|O75792|RNH2A_HUMAN4.7e-1132.79Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2[more]
sp|Q2TBT5|RNH2A_BOVIN6.1e-1132.28Ribonuclease H2 subunit A OS=Bos taurus OX=9913 GN=RNASEH2A PE=1 SV=1[more]
sp|Q9CWY8|RNH2A_MOUSE1.8e-1033.33Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2[more]
sp|Q5U209|RNH2A_RAT2.3e-1032.52Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1[more]
BLAST of Bhi09G000788 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25100.14.4e-2850.39Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of Bhi09G000788 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BXP1|A0A1S3BXP1_CUCME5.5e-3363.49Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1[more]
tr|A0A0A0KTZ4|A0A0A0KTZ4_CUCSA7.2e-3362.70Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1[more]
tr|A0A0B0NKK6|A0A0B0NKK6_GOSAR5.7e-3057.48Ribonuclease OS=Gossypium arboreum OX=29729 GN=F383_18865 PE=3 SV=1[more]
tr|A0A1U8J799|A0A1U8J799_GOSHI5.7e-3057.48Ribonuclease OS=Gossypium hirsutum OX=3635 GN=LOC107904365 PE=3 SV=1[more]
tr|A0A2P5W9S1|A0A2P5W9S1_GOSBA5.7e-3057.48Ribonuclease OS=Gossypium barbadense OX=3634 GN=GOBAR_AA32881 PE=3 SV=1[more]
BLAST of Bhi09G000788 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145114.11.3e-3363.49ribonuclease H2 subunit A [Momordica charantia][more]
XP_008453982.18.3e-3363.49PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo][more]
XP_004152096.11.1e-3262.70PREDICTED: ribonuclease H2 subunit A [Cucumis sativus] >KGN53090.1 hypothetical ... [more]
XP_022979887.11.4e-3262.70ribonuclease H2 subunit A [Cucurbita maxima][more]
XP_023527419.11.4e-3262.70ribonuclease H2 subunit A [Cucurbita pepo subsp. pepo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR001352RNase_HII/HIII
IPR024567RNase_HII/HIII_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043137 DNA replication, removal of RNA primer
biological_process GO:0006298 mismatch repair
cellular_component GO:0032299 ribonuclease H2 complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000788Bhi09M000788mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024567Ribonuclease HII/HIII domainPFAMPF01351RNase_HIIcoord: 17..49
e-value: 2.7E-6
score: 27.3
NoneNo IPR availablePANTHERPTHR10954:SF7RIBONUCLEASE H2 SUBUNIT Acoord: 85..127
NoneNo IPR availablePANTHERPTHR10954:SF7RIBONUCLEASE H2 SUBUNIT Acoord: 11..52
IPR001352Ribonuclease HII/HIIIPANTHERPTHR10954RIBONUCLEASE H2 SUBUNIT Acoord: 85..127
IPR001352Ribonuclease HII/HIIIPANTHERPTHR10954RIBONUCLEASE H2 SUBUNIT Acoord: 11..52
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 10..42
coord: 81..125

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G000788Cucumber (Gy14) v1cgywgoB432
Bhi09G000788Cucumber (Gy14) v2cgybwgoB660
Bhi09G000788Cucurbita maxima (Rimu)cmawgoB0494
Bhi09G000788Cucurbita maxima (Rimu)cmawgoB1119
Bhi09G000788Cucurbita moschata (Rifu)cmowgoB0493
Bhi09G000788Cucurbita moschata (Rifu)cmowgoB1118
Bhi09G000788Cucurbita pepo (Zucchini)cpewgoB0210
Bhi09G000788Cucurbita pepo (Zucchini)cpewgoB0420
Bhi09G000788Wild cucumber (PI 183967)cpiwgoB703
Bhi09G000788Cucumber (Chinese Long) v3cucwgoB716
Bhi09G000788Cucumber (Chinese Long) v2cuwgoB691
Bhi09G000788Bottle gourd (USVL1VR-Ls)lsiwgoB271
Bhi09G000788Melon (DHL92) v3.6.1medwgoB255
Bhi09G000788Melon (DHL92) v3.5.1mewgoB254
Bhi09G000788Watermelon (Charleston Gray)wcgwgoB069
Bhi09G000788Watermelon (97103) v2wgowmbB615
Bhi09G000788Watermelon (97103) v1wgowmB586
Bhi09G000788Silver-seed gourdcarwgoB0133
Bhi09G000788Silver-seed gourdcarwgoB0545