Bhi09G000787 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000787
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Reticulon-like protein
Location	chr9 : 21502667 .. 21502879 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCACTCCTTCATCGTGCCGATTCGACCCTCAATCTCGCACAAAGTCAGCATCATGCCTCGCTATTTCTTCCCCCCAGAAGAAAACCCCTTCGCCTTCCATTCAGGAGCTTTTGCTTTTGTCCCCTTCCACTCTCAATGAATCGACGTCTTGTCTAGTGGGTTGTGCTTCTCTGAGGAGTGTGAAAAGGTCGAGAGGTGGAGATTAA

mRNA sequence

ATGGATTTCACTCCTTCATCGTGCCGATTCGACCCTCAATCTCGCACAAAGTCAGCATCATGCCTCGCTATTTCTTCCCCCCAGAAGAAAACCCCTTCGCCTTCCATTCAGGAGCTTTTGCTTTTGTCCCCTTCCACTCTCAATGAATCGACGTCTTGTCTAGTGGGTTGTGCTTCTCTGAGGAGTGTGAAAAGGTCGAGAGGTGGAGATTAA

Coding sequence (CDS)

ATGGATTTCACTCCTTCATCGTGCCGATTCGACCCTCAATCTCGCACAAAGTCAGCATCATGCCTCGCTATTTCTTCCCCCCAGAAGAAAACCCCTTCGCCTTCCATTCAGGAGCTTTTGCTTTTGTCCCCTTCCACTCTCAATGAATCGACGTCTTGTCTAGTGGGTTGTGCTTCTCTGAGGAGTGTGAAAAGGTCGAGAGGTGGAGATTAA

Protein sequence

MDFTPSSCRFDPQSRTKSASCLAISSPQKKTPSPSIQELLLLSPSTLNESTSCLVGCASLRSVKRSRGGD

Homology

[Close]

BLAST of Bhi09G000787 vs. TrEMBL
Match: tr|A0A0A0KBW7|A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-08
Identity = 48/109 (44.04%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MDFTP S R DP+SRTKS+S L             AISSP++KTPSPSIQ++L LSPST+
Sbjct: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60

Query: 61  NESTSCLV-----------------------------GCASLRSVKRSR 68
            +S S LV                             GCAS RS++RSR
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSR 109

[Close]

BLAST of Bhi09G000787 vs. TrEMBL
Match: tr|A0A1S3BJV4|A0A1S3BJV4_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103490500 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 47/109 (43.12%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MD TP S R DP+SR KS+S L             AISSP++KTPSPSIQ+LL LSPST+
Sbjct: 1   MDLTPPSHRSDPRSRPKSSSRLAFEADQTPHFSVDAISSPRRKTPSPSIQDLLFLSPSTV 60

Query: 61  NESTSCLV-----------------------------GCASLRSVKRSR 68
            +S S LV                             GCAS RS++RSR
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSR 109

[Close]

BLAST of Bhi09G000787 vs. NCBI nr
Match: XP_022971163.1 (reticulon-like protein B17 [Cucurbita maxima])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 52/107 (48.60%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MDFTP S R +P+SRTKSAS L             AISSP KK+PSPSIQ+LLLLSPSTL
Sbjct: 1   MDFTPPSHRSEPRSRTKSASRLAIEGDEIPHFSVDAISSPPKKSPSPSIQDLLLLSPSTL 60

Query: 61  NESTSCLV---------------------------GCASLRSVKRSR 68
            +S S LV                           GCAS RSV+RSR
Sbjct: 61  RKSRSRLVDRFEMNDEVTDAAAAARRRCKTRGPQIGCASPRSVRRSR 107

[Close]

BLAST of Bhi09G000787 vs. NCBI nr
Match: XP_023533892.1 (reticulon-like protein B17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 52/108 (48.15%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MDFTP S R +P+SRTKSAS L             AISSP KK+PSPSIQ+LLLLSPSTL
Sbjct: 1   MDFTPPSHRSEPRSRTKSASRLAIEGDEIPHFSVDAISSPPKKSPSPSIQDLLLLSPSTL 60

Query: 61  NESTSCLV----------------------------GCASLRSVKRSR 68
            +S S LV                            GCAS RSV+RSR
Sbjct: 61  RKSRSRLVDRFEMNDEVTDAAAAAARRRCKTRGPQIGCASPRSVRRSR 108

[Close]

BLAST of Bhi09G000787 vs. NCBI nr
Match: XP_004149275.1 (PREDICTED: reticulon-like protein B17 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 48/109 (44.04%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MDFTP S R DP+SRTKS+S L             AISSP++KTPSPSIQ++L LSPST+
Sbjct: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60

Query: 61  NESTSCLV-----------------------------GCASLRSVKRSR 68
            +S S LV                             GCAS RS++RSR
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSR 109

[Close]

BLAST of Bhi09G000787 vs. NCBI nr
Match: KGN46983.1 (hypothetical protein Csa_6G157090 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 48/109 (44.04%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MDFTP S R DP+SRTKS+S L             AISSP++KTPSPSIQ++L LSPST+
Sbjct: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60

Query: 61  NESTSCLV-----------------------------GCASLRSVKRSR 68
            +S S LV                             GCAS RS++RSR
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSR 109

[Close]

BLAST of Bhi09G000787 vs. NCBI nr
Match: XP_022947074.1 (reticulon-like protein B17 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 50/106 (47.17%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MDFTPSSCRFDPQSRTKSASCL-------------AISSPQKKTPSPSIQELLLLSPSTL 60
           MDFTP S R + +SRTKSAS L             AISSP KK+PSPSIQ+L LLSPSTL
Sbjct: 1   MDFTPPSHRSETRSRTKSASRLAIEGDEIPHFSVDAISSPPKKSPSPSIQDLFLLSPSTL 60

Query: 61  NESTSCLV--------------------------GCASLRSVKRSR 68
            +S S LV                          GCAS RSV+RSR
Sbjct: 61  RKSRSRLVDRFEMNDEVTDAAAARRRCKTRGPQIGCASPRSVRRSR 106

The following BLAST results are available for this feature:

BLAST of Bhi09G000787 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G000787 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G000787 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBW7\|A0A0A0KBW7_CUCSA	7.2e-08	44.04	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G157090 PE=4 SV=1	[more]
tr\|A0A1S3BJV4\|A0A1S3BJV4_CUCME	1.0e-06	43.12	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103490500 PE=4 SV=1	[more]

BLAST of Bhi09G000787 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971163.1	1.3e-08	48.60	reticulon-like protein B17 [Cucurbita maxima]	[more]
XP_023533892.1	1.7e-08	48.15	reticulon-like protein B17 [Cucurbita pepo subsp. pepo]	[more]
XP_004149275.1	1.1e-07	44.04	PREDICTED: reticulon-like protein B17 [Cucumis sativus]	[more]
KGN46983.1	1.1e-07	44.04	hypothetical protein Csa_6G157090 [Cucumis sativus]	[more]
XP_022947074.1	2.4e-07	47.17	reticulon-like protein B17 [Cucurbita moschata]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000787	Bhi09M000787	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G000787	Watermelon (97103) v1	wgowmB586
Bhi09G000787	Silver-seed gourd	carwgoB0133
Bhi09G000787	Silver-seed gourd	carwgoB0545
Bhi09G000787	Cucumber (Gy14) v1	cgywgoB432
Bhi09G000787	Cucumber (Gy14) v2	cgybwgoB660
Bhi09G000787	Cucurbita maxima (Rimu)	cmawgoB0494
Bhi09G000787	Cucurbita maxima (Rimu)	cmawgoB1119
Bhi09G000787	Cucurbita moschata (Rifu)	cmowgoB0493
Bhi09G000787	Cucurbita moschata (Rifu)	cmowgoB1118
Bhi09G000787	Cucurbita pepo (Zucchini)	cpewgoB0210
Bhi09G000787	Cucurbita pepo (Zucchini)	cpewgoB0420
Bhi09G000787	Wild cucumber (PI 183967)	cpiwgoB703
Bhi09G000787	Cucumber (Chinese Long) v3	cucwgoB716
Bhi09G000787	Cucumber (Chinese Long) v2	cuwgoB691
Bhi09G000787	Bottle gourd (USVL1VR-Ls)	lsiwgoB271
Bhi09G000787	Melon (DHL92) v3.6.1	medwgoB255
Bhi09G000787	Melon (DHL92) v3.5.1	mewgoB254
Bhi09G000787	Watermelon (Charleston Gray)	wcgwgoB069
Bhi09G000787	Watermelon (97103) v2	wgowmbB615