Bhi09G000567 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000567
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	disease resistance protein RGA2-like
Location	chr9 : 14815997 .. 14816213 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAAAGATTGGTGTGGATTCTTCTTCTTCAACTTTGTCTAAATTATCTCAACTTGAGATTGGAAATATTGATATTGAGTTCCTGTCAGATGAGTTATTCTGCAATATGACCAATCTTGAGTTTCTTAACATAGGACATTGCAAAAATATACAATTGTTTTCTTCCCATCTTGTTGATGAGGATAATGATGATGTACTATGGAAAAGACTAG

mRNA sequence

ATGGCTACAAAGATTGGTGTGGATTCTTCTTCTTCAACTTTGTCTAAATTATCTCAACTTGAGATTGGAAATATTGATATTGAGTTCCTGTCAGATGAGTTATTCTGCAATATGACCAATCTTGAGTTTCTTAACATAGGACATTGCAAAAATATACAATTGTTTTCTTCCCATCTTGTTGATGAGGATAATGATGATGTACTATGGAAAAGACTAG

Coding sequence (CDS)

ATGGCTACAAAGATTGGTGTGGATTCTTCTTCTTCAACTTTGTCTAAATTATCTCAACTTGAGATTGGAAATATTGATATTGAGTTCCTGTCAGATGAGTTATTCTGCAATATGACCAATCTTGAGTTTCTTAACATAGGACATTGCAAAAATATACAATTGTTTTCTTCCCATCTTGTTGATGAGGATAATGATGATGTACTATGGAAAAGACTAG

Protein sequence

MATKIGVDSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHLVDEDNDDVLWKRL

Homology

[Close]

BLAST of Bhi09G000567 vs. TrEMBL
Match: tr|A0A0A0K9P7|A0A0A0K9P7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G425940 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-14
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1   MATKIGV-DSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +    SSSSTLSKLS LEIG ID+EFL  ELFCNMT+LE L I  CK++Q+ S H 
Sbjct: 727 MATDLSEHSSSSSTLSKLSFLEIGTIDLEFLPVELFCNMTHLESLIIERCKSLQMSSPHP 786

Query: 61  VDEDNDDVLWKRL 73
           VDEDN DV+WK+L
Sbjct: 787 VDEDN-DVVWKKL 798

[Close]

BLAST of Bhi09G000567 vs. TrEMBL
Match: tr|A0A0A0K5Z6|A0A0A0K5Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G425920 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1   MATKIGVDSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHLV 60
           MAT    DSSS+ LSKLS L I NID+EFL +ELF + T+LE   + +CKN+Q+ SSHLV
Sbjct: 520 MATTPAADSSSA-LSKLSILHIQNIDLEFLPEELFGSTTDLEIFTVVNCKNLQMSSSHLV 579

Query: 61  DEDNDDVLWKRL 73
           DEDND VL K+L
Sbjct: 580 DEDNDGVLGKKL 590

[Close]

BLAST of Bhi09G000567 vs. TrEMBL
Match: tr|A0A1S3CEG6|A0A1S3CEG6_CUCME (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103499950 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MATKIGVD-SSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +  D SSSSTLSKLS LEI NIDI+FLS+ L CNM +LE L I  CK +Q+ SSHL
Sbjct: 641 MATNLAADSSSSSTLSKLSTLEIENIDIKFLSEALNCNMKDLESLTIQSCKYLQMSSSHL 700

Query: 61  VDEDNDDVL-WKRL 73
           V E++D +L WK L
Sbjct: 701 VYEEDDRLLYWKEL 714

[Close]

BLAST of Bhi09G000567 vs. TrEMBL
Match: tr|A0A0A0K890|A0A0A0K890_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G425910 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1   MATKIGVD-SSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +  D SSSSTLSKLS LEI NIDI+FL + L CNM +LE L I +CK++ + SSHL
Sbjct: 154 MATNLAADSSSSSTLSKLSSLEIDNIDIKFLPEVLNCNMKDLESLTIRNCKHLLMSSSHL 213

Query: 61  V-DEDNDDVLWKRL 73
           V +ED   + WK L
Sbjct: 214 VYEEDGRLLYWKEL 227

[Close]

BLAST of Bhi09G000567 vs. TrEMBL
Match: tr|A0A1S3CQH9|A0A1S3CQH9_CUCME (probable disease resistance protein At5g66900 OS=Cucumis melo OX=3656 GN=LOC103503128 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1   MATKIGVD-SSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +  D SSSSTLSKLS LEI NIDI+FL + L CNM +L+ L+I  CK +Q+ SS L
Sbjct: 71  MATNLAADSSSSSTLSKLSTLEIENIDIKFLPEALNCNMKDLQVLSIRSCKYLQMSSSRL 130

Query: 61  VDEDNDD-VLWKRL 73
           V E+ D  V WK L
Sbjct: 131 VYEEEDRLVYWKEL 144

[Close]

BLAST of Bhi09G000567 vs. NCBI nr
Match: KGN45102.1 (hypothetical protein Csa_7G425940 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1   MATKIGV-DSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +    SSSSTLSKLS LEIG ID+EFL  ELFCNMT+LE L I  CK++Q+ S H 
Sbjct: 727 MATDLSEHSSSSSTLSKLSFLEIGTIDLEFLPVELFCNMTHLESLIIERCKSLQMSSPHP 786

Query: 61  VDEDNDDVLWKRL 73
           VDEDN DV+WK+L
Sbjct: 787 VDEDN-DVVWKKL 798

[Close]

BLAST of Bhi09G000567 vs. NCBI nr
Match: XP_011659434.1 (PREDICTED: putative disease resistance protein RGA1 isoform X1 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1   MATKIGV-DSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +    SSSSTLSKLS LEIG ID+EFL  ELFCNMT+LE L I  CK++Q+ S H 
Sbjct: 906 MATDLSEHSSSSSTLSKLSFLEIGTIDLEFLPVELFCNMTHLESLIIERCKSLQMSSPHP 965

Query: 61  VDEDNDDVLWKRL 73
           VDEDN DV+WK+L
Sbjct: 966 VDEDN-DVVWKKL 977

[Close]

BLAST of Bhi09G000567 vs. NCBI nr
Match: XP_011659435.1 (PREDICTED: putative disease resistance protein RGA1 isoform X2 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1   MATKIGV-DSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHL 60
           MAT +    SSSSTLSKLS LEIG ID+EFL  ELFCNMT+LE L I  CK++Q+ S H 
Sbjct: 906 MATDLSEHSSSSSTLSKLSFLEIGTIDLEFLPVELFCNMTHLESLIIERCKSLQMSSPHP 965

Query: 61  VDEDNDDVLWKRL 73
           VDEDN DV+WK+L
Sbjct: 966 VDEDN-DVVWKKL 977

[Close]

BLAST of Bhi09G000567 vs. NCBI nr
Match: KGN45100.1 (hypothetical protein Csa_7G425920 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1   MATKIGVDSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHLV 60
           MAT    DSSS+ LSKLS L I NID+EFL +ELF + T+LE   + +CKN+Q+ SSHLV
Sbjct: 520 MATTPAADSSSA-LSKLSILHIQNIDLEFLPEELFGSTTDLEIFTVVNCKNLQMSSSHLV 579

Query: 61  DEDNDDVLWKRL 73
           DEDND VL K+L
Sbjct: 580 DEDNDGVLGKKL 590

[Close]

BLAST of Bhi09G000567 vs. NCBI nr
Match: XP_011659433.1 (PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1    MATKIGVDSSSSTLSKLSQLEIGNIDIEFLSDELFCNMTNLEFLNIGHCKNIQLFSSHLV 60
            MAT    DSSS+ LSKLS L I NID+EFL +ELF + T+LE   + +CKN+Q+ SSHLV
Sbjct: 932  MATTPAADSSSA-LSKLSILHIQNIDLEFLPEELFGSTTDLEIFTVVNCKNLQMSSSHLV 991

Query: 61   DEDNDDVLWKRL 73
            DEDND VL K+L
Sbjct: 992  DEDNDGVLGKKL 1002

The following BLAST results are available for this feature:

BLAST of Bhi09G000567 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G000567 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G000567 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9P7\|A0A0A0K9P7_CUCSA	9.1e-14	65.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G425940 PE=3 SV=1	[more]
tr\|A0A0A0K5Z6\|A0A0A0K5Z6_CUCSA	2.2e-12	61.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G425920 PE=4 SV=1	[more]
tr\|A0A1S3CEG6\|A0A1S3CEG6_CUCME	6.5e-12	62.16	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103499950 PE=...	[more]
tr\|A0A0A0K890\|A0A0A0K890_CUCSA	2.1e-10	58.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G425910 PE=4 SV=1	[more]
tr\|A0A1S3CQH9\|A0A1S3CQH9_CUCME	6.1e-10	58.11	probable disease resistance protein At5g66900 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of Bhi09G000567 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45102.1	1.4e-13	65.75	hypothetical protein Csa_7G425940 [Cucumis sativus]	[more]
XP_011659434.1	1.4e-13	65.75	PREDICTED: putative disease resistance protein RGA1 isoform X1 [Cucumis sativus]	[more]
XP_011659435.1	1.4e-13	65.75	PREDICTED: putative disease resistance protein RGA1 isoform X2 [Cucumis sativus]	[more]
KGN45100.1	3.4e-12	61.11	hypothetical protein Csa_7G425920 [Cucumis sativus]	[more]
XP_011659433.1	3.4e-12	61.11	PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000567	Bhi09M000567	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 3..63 e-value: 2.2E-6 score: 28.4
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 11..58

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G000567	Silver-seed gourd	carwgoB1015
Bhi09G000567	Cucumber (Gy14) v2	cgybwgoB673
Bhi09G000567	Cucumber (Gy14) v1	cgywgoB238
Bhi09G000567	Cucurbita maxima (Rimu)	cmawgoB0487
Bhi09G000567	Cucurbita maxima (Rimu)	cmawgoB1128
Bhi09G000567	Cucurbita moschata (Rifu)	cmowgoB0486
Bhi09G000567	Cucurbita moschata (Rifu)	cmowgoB1126
Bhi09G000567	Cucurbita pepo (Zucchini)	cpewgoB0201
Bhi09G000567	Cucurbita pepo (Zucchini)	cpewgoB0414
Bhi09G000567	Wild cucumber (PI 183967)	cpiwgoB716
Bhi09G000567	Cucumber (Chinese Long) v3	cucwgoB730
Bhi09G000567	Cucumber (Chinese Long) v2	cuwgoB704
Bhi09G000567	Bottle gourd (USVL1VR-Ls)	lsiwgoB279
Bhi09G000567	Melon (DHL92) v3.6.1	medwgoB249
Bhi09G000567	Melon (DHL92) v3.6.1	medwgoB254
Bhi09G000567	Melon (DHL92) v3.5.1	mewgoB248
Bhi09G000567	Melon (DHL92) v3.5.1	mewgoB253
Bhi09G000567	Silver-seed gourd	carwgoB0439
Bhi09G000567	Silver-seed gourd	carwgoB0546