Bhi09G000374 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000374
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Phosphatase 2C family protein
Location	chr9 : 9886313 .. 9886524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGCCGGAGGTCACATTTATGTCAAGGACTAAAGAAGATGAATGTTTGATTGTGGCAAATGATGGAGTAGGGGATGTCTTGTCTAATGAAGATGTGATGAAGATGGCGTGTGGCATACTAAGGAGGCGACGCAGGAAGTTGGTGTTTGGTGGAACTCGCATGATCCAATTTCTCCAGCACAATATGCTGCAAATCAAATTAGTAAG

mRNA sequence

ATGTTGGAGCCGGAGGTCACATTTATGTCAAGGACTAAAGAAGATGAATGTTTGATTGTGGCAAATGATGGAGTAGGGGATGTCTTGTCTAATGAAGATGAAGTTGGTGTTTGGTGGAACTCGCATGATCCAATTTCTCCAGCACAATATGCTGCAAATCAAATTAGTAAG

Coding sequence (CDS)

ATGTTGGAGCCGGAGGTCACATTTATGTCAAGGACTAAAGAAGATGAATGTTTGATTGTGGCAAATGATGGAGTAGGGGATGTCTTGTCTAATGAAGATGAAGTTGGTGTTTGGTGGAACTCGCATGATCCAATTTCTCCAGCACAATATGCTGCAAATCAAATTAGTAAG

Protein sequence

MLEPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGVWWNSHDPISPAQYAANQISK

Homology

[Close]

BLAST of Bhi09G000374 vs. Swiss-Prot
Match: sp|Q9CAJ0|P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana OX=3702 GN=HAB1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 20/31 (64.52%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED 34
           EPEVTFM R++EDECLI+A+DG+ DV++N++
Sbjct: 412 EPEVTFMPRSREDECLILASDGLWDVMNNQE 442

[Close]

BLAST of Bhi09G000374 vs. Swiss-Prot
Match: sp|Q9LNP9|P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana OX=3702 GN=HAB2 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-05
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED 34
           +PEVTFM R +EDECLI+A+DG+ DV+SN++
Sbjct: 412 DPEVTFMPRAREDECLILASDGLWDVMSNQE 442

[Close]

BLAST of Bhi09G000374 vs. Swiss-Prot
Match: sp|Q5N9N2|P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-04
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNE---DEVGVWWNSHDPISPA 49
           EPEVT   RT +DECLI+A+DG+ DV++NE   + V   ++++ P +PA
Sbjct: 299 EPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVRACFHNNGPPAPA 347

[Close]

BLAST of Bhi09G000374 vs. Swiss-Prot
Match: sp|P49598|P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana OX=3702 GN=PP2CA PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-04
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV 38
           +PEVT   RT EDECLI+A+DG+ DV+ NE   GV
Sbjct: 307 DPEVTVTDRTDEDECLILASDGLWDVVPNETACGV 341

[Close]

BLAST of Bhi09G000374 vs. Swiss-Prot
Match: sp|Q0JLP9|P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C06 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-04
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 4   PEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV------WWNSHDPISPA 49
           PE+T + R K+DECL++A+DG+ DV+SNE+   V       W+  +  +PA
Sbjct: 367 PEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNPA 417

[Close]

BLAST of Bhi09G000374 vs. TAIR10
Match: AT1G72770.1 (HYPERSENSITIVE TO ABA1)

HSP 1 Score: 49.7 bits (117), Expect = 7.0e-07
Identity = 20/31 (64.52%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED 34
           EPEVTFM R++EDECLI+A+DG+ DV++N++
Sbjct: 412 EPEVTFMPRSREDECLILASDGLWDVMNNQE 442

[Close]

BLAST of Bhi09G000374 vs. TAIR10
Match: AT1G17550.1 (homology to ABI2)

HSP 1 Score: 49.3 bits (116), Expect = 9.2e-07
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED 34
           +PEVTFM R +EDECLI+A+DG+ DV+SN++
Sbjct: 412 DPEVTFMPRAREDECLILASDGLWDVMSNQE 442

[Close]

BLAST of Bhi09G000374 vs. TAIR10
Match: AT3G11410.1 (protein phosphatase 2CA)

HSP 1 Score: 46.2 bits (108), Expect = 7.8e-06
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV 38
           +PEVT   RT EDECLI+A+DG+ DV+ NE   GV
Sbjct: 307 DPEVTVTDRTDEDECLILASDGLWDVVPNETACGV 341

[Close]

BLAST of Bhi09G000374 vs. TAIR10
Match: AT5G57050.1 (Protein phosphatase 2C family protein)

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-05
Identity = 18/31 (58.06%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED 34
           +PEVT + R KED+CLI+A+DG+ DV++NE+
Sbjct: 317 DPEVTSVRRVKEDDCLILASDGLWDVMTNEE 347

[Close]

BLAST of Bhi09G000374 vs. TAIR10
Match: AT4G26080.1 (Protein phosphatase 2C family protein)

HSP 1 Score: 44.3 bits (103), Expect = 3.0e-05
Identity = 18/31 (58.06%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED 34
           +PEVT + R KED+CLI+A+DGV DV+++E+
Sbjct: 327 DPEVTAVKRVKEDDCLILASDGVWDVMTDEE 357

[Close]

BLAST of Bhi09G000374 vs. TrEMBL
Match: tr|M0SHZ3|M0SHZ3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-05
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNED-------EVGVWWNSHDPISP-------- 58
           EPE+TF+ R +EDECLIVA+DG+ DV+SNE+        + +W   + P+ P        
Sbjct: 397 EPEITFVQRAREDECLIVASDGLWDVMSNEEVCDVARRRILLWHKKNGPVPPSTPRGKQA 456

[Close]

BLAST of Bhi09G000374 vs. TrEMBL
Match: tr|A0A2N9GC23|A0A2N9GC23_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24683 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.0e-05
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 4   PEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV--------WWNS--HDPISPAQYAAN 57
           PE+TFM+RT EDECLI+A+DG+ DV++NE EVG         W  S   D +SPAQ  A+
Sbjct: 325 PEITFMTRTDEDECLILASDGLWDVMTNE-EVGEVARRLLRRWRRSLMTDEVSPAQVVAD 384

[Close]

BLAST of Bhi09G000374 vs. TrEMBL
Match: tr|M4DJB7|M4DJB7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVG------VWWNSHDPISP 48
           EPEVTFM R +EDECLI+A+DG+ DV+SN+D         +WW+  +   P
Sbjct: 311 EPEVTFMPRAREDECLILASDGLWDVMSNQDACEFARRRILWWHKRNGALP 361

[Close]

BLAST of Bhi09G000374 vs. TrEMBL
Match: tr|A0A0V0IBJ7|A0A0V0IBJ7_SOLCH (Uncharacterized protein OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV---WWNSHDPISPAQYAANQIS 57
           EPEVT   RT EDECLI+A+DG+ DV+SNE   GV      S  P SPA    N I+
Sbjct: 291 EPEVTITDRTNEDECLILASDGLWDVVSNETACGVARMCLQSRRPPSPADSPGNDIT 347

[Close]

BLAST of Bhi09G000374 vs. TrEMBL
Match: tr|A0A2K1R841|A0A2K1R841_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T063000v3 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 4   PEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV--------WWNS-HDPISPAQYAANQ 58
           PEVTFM+RT EDECLI+A+DG+ DV++NE EVG         W  S  D  SPAQ  A+ 
Sbjct: 296 PEVTFMTRTDEDECLILASDGLWDVMTNE-EVGEVACRILRRWRRSLSDGFSPAQTVADN 355

[Close]

BLAST of Bhi09G000374 vs. NCBI nr
Match: XP_022148145.1 (probable protein phosphatase 2C 6 [Momordica charantia] >XP_022148163.1 probable protein phosphatase 2C 6 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-08
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 3   EPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV-------------WWNSHDPISPAQ 58
           EPEVTFMSRT+EDECLI+A+DGV DVLSN+D + +                 H+ I PAQ
Sbjct: 238 EPEVTFMSRTEEDECLILASDGVWDVLSNDDVMKMACSILRRKRRKLALGGIHNAICPAQ 297

[Close]

BLAST of Bhi09G000374 vs. NCBI nr
Match: XP_011012462.1 (PREDICTED: probable protein phosphatase 2C 6 isoform X1 [Populus euphratica])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 4   PEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV--------WWNSHDPISPAQYAANQI 58
           PEVTFM+RT EDECLI+A+DG+ DV++NE EVG         W  S D  SPAQ  A+ +
Sbjct: 302 PEVTFMTRTDEDECLILASDGLWDVMTNE-EVGEVARRILRRWRRSSDGFSPAQTVADNL 361

[Close]

BLAST of Bhi09G000374 vs. NCBI nr
Match: XP_011012464.1 (PREDICTED: probable protein phosphatase 2C 6 isoform X2 [Populus euphratica])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 4   PEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV--------WWNSHDPISPAQYAANQI 58
           PEVTFM+RT EDECLI+A+DG+ DV++NE EVG         W  S D  SPAQ  A+ +
Sbjct: 296 PEVTFMTRTDEDECLILASDGLWDVMTNE-EVGEVARRILRRWRRSSDGFSPAQTVADNL 355

[Close]

BLAST of Bhi09G000374 vs. NCBI nr
Match: XP_022964466.1 (probable protein phosphatase 2C 6 isoform X2 [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-05
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1   MLEPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV-------------WWNSHDPISP 58
           + EPE+TF SRT+EDECLI+A+DGV DVLSN+D + +                + + I P
Sbjct: 160 IFEPEITFTSRTEEDECLILASDGVWDVLSNDDVMKMACSVLKRQRKKLALGGTGNVIYP 219

[Close]

BLAST of Bhi09G000374 vs. NCBI nr
Match: XP_022964465.1 (probable protein phosphatase 2C 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-05
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1   MLEPEVTFMSRTKEDECLIVANDGVGDVLSNEDEVGV-------------WWNSHDPISP 58
           + EPE+TF SRT+EDECLI+A+DGV DVLSN+D + +                + + I P
Sbjct: 211 IFEPEITFTSRTEEDECLILASDGVWDVLSNDDVMKMACSVLKRQRKKLALGGTGNVIYP 270

The following BLAST results are available for this feature:

BLAST of Bhi09G000374 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CAJ0\|P2C16_ARATH	1.3e-05	64.52	Protein phosphatase 2C 16 OS=Arabidopsis thaliana OX=3702 GN=HAB1 PE=1 SV=1	[more]
sp\|Q9LNP9\|P2C07_ARATH	1.7e-05	64.52	Protein phosphatase 2C 7 OS=Arabidopsis thaliana OX=3702 GN=HAB2 PE=1 SV=2	[more]
sp\|Q5N9N2\|P2C09_ORYSJ	1.4e-04	46.94	Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
sp\|P49598\|P2C37_ARATH	1.4e-04	60.00	Protein phosphatase 2C 37 OS=Arabidopsis thaliana OX=3702 GN=PP2CA PE=1 SV=1	[more]
sp\|Q0JLP9\|P2C06_ORYSJ	1.8e-04	41.18	Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica OX=39947 GN=PP...	[more]

BLAST of Bhi09G000374 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72770.1	7.0e-07	64.52	HYPERSENSITIVE TO ABA1	[more]
AT1G17550.1	9.2e-07	64.52	homology to ABI2	[more]
AT3G11410.1	7.8e-06	60.00	protein phosphatase 2CA	[more]
AT5G57050.1	2.3e-05	58.06	Protein phosphatase 2C family protein	[more]
AT4G26080.1	3.0e-05	58.06	Protein phosphatase 2C family protein	[more]

BLAST of Bhi09G000374 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M0SHZ3\|M0SHZ3_MUSAM	6.1e-05	41.10	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1	[more]
tr\|A0A2N9GC23\|A0A2N9GC23_FAGSY	8.0e-05	49.21	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24683 PE=3 SV=1	[more]
tr\|M4DJB7\|M4DJB7_BRARP	1.0e-04	49.02	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1	[more]
tr\|A0A0V0IBJ7\|A0A0V0IBJ7_SOLCH	1.0e-04	52.63	Uncharacterized protein OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
tr\|A0A2K1R841\|A0A2K1R841_POPTR	1.0e-04	50.79	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T063000v3 PE=3 S...	[more]

BLAST of Bhi09G000374 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148145.1	5.2e-08	52.94	probable protein phosphatase 2C 6 [Momordica charantia] >XP_022148163.1 probable...	[more]
XP_011012462.1	6.4e-06	51.61	PREDICTED: probable protein phosphatase 2C 6 isoform X1 [Populus euphratica]	[more]
XP_011012464.1	6.4e-06	51.61	PREDICTED: probable protein phosphatase 2C 6 isoform X2 [Populus euphratica]	[more]
XP_022964466.1	1.4e-05	47.14	probable protein phosphatase 2C 6 isoform X2 [Cucurbita moschata]	[more]
XP_022964465.1	1.4e-05	47.14	probable protein phosphatase 2C 6 isoform X1 [Cucurbita moschata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036457	PPM-type_dom_sf
IPR001932	PPM-type_phosphatase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000374	Bhi09M000374	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001932	PPM-type phosphatase domain	PFAM	PF00481	PP2C	coord: 3..36 e-value: 1.5E-5 score: 24.7
IPR036457	PPM-type phosphatase domain superfamily	GENE3D	G3DSA:3.60.40.10		coord: 1..57 e-value: 1.4E-8 score: 36.3
IPR036457	PPM-type phosphatase domain superfamily	SUPERFAMILY	SSF81606	PP2C-like	coord: 2..55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G000374	Cucumber (Gy14) v1	cgywgoB721
Bhi09G000374	Cucumber (Gy14) v2	cgybwgoB680
Bhi09G000374	Cucurbita maxima (Rimu)	cmawgoB0495
Bhi09G000374	Cucurbita maxima (Rimu)	cmawgoB1122
Bhi09G000374	Cucurbita moschata (Rifu)	cmowgoB0494
Bhi09G000374	Cucurbita moschata (Rifu)	cmowgoB1121
Bhi09G000374	Cucurbita pepo (Zucchini)	cpewgoB0211
Bhi09G000374	Cucurbita pepo (Zucchini)	cpewgoB0424
Bhi09G000374	Wild cucumber (PI 183967)	cpiwgoB721
Bhi09G000374	Cucumber (Chinese Long) v3	cucwgoB737
Bhi09G000374	Cucumber (Chinese Long) v2	cuwgoB710
Bhi09G000374	Bottle gourd (USVL1VR-Ls)	lsiwgoB284
Bhi09G000374	Melon (DHL92) v3.6.1	medwgoB258
Bhi09G000374	Melon (DHL92) v3.5.1	mewgoB257
Bhi09G000374	Watermelon (Charleston Gray)	wcgwgoB066
Bhi09G000374	Watermelon (Charleston Gray)	wcgwgoB603
Bhi09G000374	Watermelon (97103) v2	wgowmbB612
Bhi09G000374	Watermelon (97103) v1	wgowmB578
Bhi09G000374	Silver-seed gourd	carwgoB0884
Bhi09G000374	Silver-seed gourd	carwgoB1205