Bhi08G001465 (gene) Wax gourd

Overview
NameBhi08G001465
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionProtein root primordium defective 1
Locationchr8 : 51818417 .. 51818734 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCATGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGTTGA

mRNA sequence

ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCATGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGTTGA

Coding sequence (CDS)

ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCATGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGTTGA

Protein sequence

MWPVTNHENIKLKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
Homology
[Close]
BLAST of Bhi08G001465 vs. TAIR10
Match: AT2G31290.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-28
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 15  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSD+FR+VN  G+K+S+EIEL+ WKPELA+S +E++A K G EP+FSCSLP+T    WE+
Sbjct: 168 YSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWER 227

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F EFNA PY+SPY +   LVEG+KE EKR+VG
Sbjct: 228 FMEFNAFPYISPYEDHGDLVEGSKESEKRSVG 259

[Close]
BLAST of Bhi08G001465 vs. TAIR10
Match: AT3G63090.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-08
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 0 

Query: 12  LKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA----CKHGV--EPAFSCSLPT 71
           ++ Y + FR+  + ++    +EL+SW P+ A S IE  A     K GV   P ++  LP+
Sbjct: 181 VQKYPNYFRLTGLPEEGKSFLELVSWNPDFAKSKIELRAEDETLKTGVRIRPNYNVKLPS 240

Query: 72  TL-----LNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
                  +  W +  ++    Y+SPY +   L + +KEMEKRTVG
Sbjct: 241 GFFLRKEMREWTR--DWLEQDYISPYEDVSHLDQASKEMEKRTVG 283

[Close]
BLAST of Bhi08G001465 vs. TAIR10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 29/103 (28.16%), Postives = 47/103 (45.63%), Query Frame = 0 

Query: 14  DYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA------CKHG---VEPAFSCSLP 73
           ++   F++V +G      +EL+SW P  AI+ +E         C+H    +  AF    P
Sbjct: 197 NFPQHFKVVKLGDGEEY-LELVSWNPAWAITELEKKTLGITEDCEHKPGMLSLAFPMKFP 256

Query: 74  TTLLNSWE---KFHEFNASPYVSPYVNPVGLVEGTKEMEKRTV 105
            +    +    K   F    Y+SPY +  GL  G+KE +KR +
Sbjct: 257 PSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAI 298

[Close]
BLAST of Bhi08G001465 vs. TrEMBL
Match: tr|A0A1S4DTX7|A0A1S4DTX7_CUCME (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103485622 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.1e-39
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]
BLAST of Bhi08G001465 vs. TrEMBL
Match: tr|A0A0A0KEF0|A0A0A0KEF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.1e-39
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]
BLAST of Bhi08G001465 vs. TrEMBL
Match: tr|A0A2P4LYU1|A0A2P4LYU1_QUESU (Protein root primordium defective 1 OS=Quercus suber OX=58331 GN=CFP56_04703 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.1e-31
Identity = 64/92 (69.57%), Postives = 81/92 (88.04%), Query Frame = 0 

Query: 15  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMFRIVN  G+++S+EIEL+SW P+LA+S IE+SA KHG +P FSCSLP+T + SWE+
Sbjct: 171 YSDMFRIVNYSGRRSSMEIELVSWNPDLAVSTIEASARKHGSQPCFSCSLPSTWVKSWER 230

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNASPY+SPY++P GL+EG+KE EKRTVG
Sbjct: 231 FHEFNASPYISPYLDPRGLLEGSKESEKRTVG 262

[Close]
BLAST of Bhi08G001465 vs. TrEMBL
Match: tr|M5VZ43|M5VZ43_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G028100 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29
Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 15  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMF+IVN  G+++S+EIEL+SW P+LA+S IE+SA K G EP F+CSLP+T + SWE+
Sbjct: 165 YSDMFQIVNYSGRRSSMEIELVSWNPDLAVSAIEASAHKQGTEPCFTCSLPSTWVKSWER 224

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNA+PY+SPY++  GLVEG+KEMEKRTVG
Sbjct: 225 FHEFNATPYISPYLDSKGLVEGSKEMEKRTVG 256

[Close]
BLAST of Bhi08G001465 vs. TrEMBL
Match: tr|A0A2P6PS32|A0A2P6PS32_ROSCH (Putative plant organelle RNA recognition domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0275671 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 15  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           Y DMFRIVN  G+++S+EIEL++W P+LA+S IE+SA K G EP FSCSLP+T + SWE+
Sbjct: 194 YPDMFRIVNYSGRRSSMEIELVAWNPDLAVSAIEASAQKQGSEPCFSCSLPSTWVKSWER 253

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNA+PY+SPY++  GLVEG+KEMEKRTVG
Sbjct: 254 FHEFNATPYISPYLDTKGLVEGSKEMEKRTVG 285

[Close]
BLAST of Bhi08G001465 vs. NCBI nr
Match: XP_004140969.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011656637.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN46146.1 hypothetical protein Csa_6G057120 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]
BLAST of Bhi08G001465 vs. NCBI nr
Match: XP_016899452.1 (PREDICTED: LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]
BLAST of Bhi08G001465 vs. NCBI nr
Match: XP_022134173.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Momordica charantia] >XP_022134174.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 3.4e-37
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEK
Sbjct: 174 YSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSASRHGVEPAFSCSLPTTWINSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Sbjct: 234 FHEFNASPYVSPYVNPRELVQGSKEMEKRTVG 265

[Close]
BLAST of Bhi08G001465 vs. NCBI nr
Match: XP_022134175.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 3.4e-37
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEK
Sbjct: 138 YSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSASRHGVEPAFSCSLPTTWINSWEK 197

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Sbjct: 198 FHEFNASPYVSPYVNPRELVQGSKEMEKRTVG 229

[Close]
BLAST of Bhi08G001465 vs. NCBI nr
Match: XP_022134176.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 3.4e-37
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0 

Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEK
Sbjct: 61  YSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSASRHGVEPAFSCSLPTTWINSWEK 120

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Sbjct: 121 FHEFNASPYVSPYVNPRELVQGSKEMEKRTVG 152

The following BLAST results are available for this feature:
BLAST of Bhi08G001465 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi08G001465 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31290.16.0e-2861.96Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT3G63090.14.0e-0832.38Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT5G21970.12.9e-0628.16Ubiquitin carboxyl-terminal hydrolase family protein[more]
BLAST of Bhi08G001465 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DTX7|A0A1S4DTX7_CUCME9.1e-3986.96LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656... [more]
tr|A0A0A0KEF0|A0A0A0KEF0_CUCSA9.1e-3986.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 SV=1[more]
tr|A0A2P4LYU1|A0A2P4LYU1_QUESU4.1e-3169.57Protein root primordium defective 1 OS=Quercus suber OX=58331 GN=CFP56_04703 PE=... [more]
tr|M5VZ43|M5VZ43_PRUPE1.3e-2967.39Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G028100 PE=4 SV=1[more]
tr|A0A2P6PS32|A0A2P6PS32_ROSCH2.9e-2967.39Putative plant organelle RNA recognition domain-containing protein OS=Rosa chine... [more]
BLAST of Bhi08G001465 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140969.11.4e-3886.96PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011656637.1... [more]
XP_016899452.11.4e-3886.96PREDICTED: LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis mel... [more]
XP_022134173.13.4e-3784.78protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Momordica charantia] >XP_0221341... [more]
XP_022134175.13.4e-3784.78protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Momordica charantia][more]
XP_022134176.13.4e-3784.78protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 [Momordica charantia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021099PORR_domain
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001465Bhi08M001465mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 12..105
e-value: 3.0E-15
score: 55.9
NoneNo IPR availablePANTHERPTHR31476:SF5SUBFAMILY NOT NAMEDcoord: 14..105
NoneNo IPR availablePANTHERPTHR31476FAMILY NOT NAMEDcoord: 14..105

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi08G001465Cucurbita maxima (Rimu)cmawgoB0257
Bhi08G001465Cucurbita pepo (Zucchini)cpewgoB0041
Bhi08G001465Cucurbita pepo (Zucchini)cpewgoB0655
Bhi08G001465Silver-seed gourdcarwgoB1179