Bhi08G000996 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000996
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribonuclease H-like domain containing protein
Location	chr8 : 37236605 .. 37237087 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATGACATAAATGCAATAATCAATAAAGGTAGTTTCATCTCGGTAGAAGCAAGAAGTAAATGGATTAGAGACTACCTGGAGCAAGTTACCAGTGTCTCTCTTCCTCCTATTTTGAATCAAGGTGTTAAATCAATGACGACTTCGACATGCAACAGGGTTTGGTCTCCTCCTACCAAAGGCTTATTCTCTCTCACCGTCGATGTTGCATGGATTGTAAATCCAACCGTGACAGGTCTTGGTGCTGCTATACGGAACTACGATGGCTCTGTTATAGCTTTACTCTCAAAGAGTCTGACCATGACTTACACGCCATTAATTGTCGAACTCCTTGCAATAATCAAAGGCATGAAGTTGGTCATTTCACTGGGTATCCCTAACCTTCGTGTTGAATCAGATTGTCTACTGGCGATTAATCTCATTAACAAAGAGCAGTTAGCTTTGAATGAAGTCGGTAGAACATTGAAGAAATTTTGTTGA

mRNA sequence

ATGTGGAATGACATAAATGCAATAATCAATAAAGGTAGTTTCATCTCGGTAGAAGCAAGAAGTAAATGGATTAGAGACTACCTGGAGCAAGTTACCAGTGTCTCTCTTCCTCCTATTTTGAATCAAGGTGTTAAATCAATGACGACTTCGACATGCAACAGGGTTTGGTCTCCTCCTACCAAAGGCTTATTCTCTCTCACCGTCGATGTTGCATGGATTGTAAATCCAACCGTGACAGGTCTTGGTGCTGCTATACGGAACTACGATGGCTCTGTTATAGCTTTACTCTCAAAGAGTCTGACCATGACTTACACGCCATTAATTGTCGAACTCCTTGCAATAATCAAAGGCATGAAGTTGGTCATTTCACTGGGTATCCCTAACCTTCGTGTTGAATCAGATTGTCTACTGGCGATTAATCTCATTAACAAAGAGCAGTTAGCTTTGAATGAAGTCGGTAGAACATTGAAGAAATTTTGTTGA

Coding sequence (CDS)

ATGTGGAATGACATAAATGCAATAATCAATAAAGGTAGTTTCATCTCGGTAGAAGCAAGAAGTAAATGGATTAGAGACTACCTGGAGCAAGTTACCAGTGTCTCTCTTCCTCCTATTTTGAATCAAGGTGTTAAATCAATGACGACTTCGACATGCAACAGGGTTTGGTCTCCTCCTACCAAAGGCTTATTCTCTCTCACCGTCGATGTTGCATGGATTGTAAATCCAACCGTGACAGGTCTTGGTGCTGCTATACGGAACTACGATGGCTCTGTTATAGCTTTACTCTCAAAGAGTCTGACCATGACTTACACGCCATTAATTGTCGAACTCCTTGCAATAATCAAAGGCATGAAGTTGGTCATTTCACTGGGTATCCCTAACCTTCGTGTTGAATCAGATTGTCTACTGGCGATTAATCTCATTAACAAAGAGCAGTTAGCTTTGAATGAAGTCGGTAGAACATTGAAGAAATTTTGTTGA

Protein sequence

MWNDINAIINKGSFISVEARSKWIRDYLEQVTSVSLPPILNQGVKSMTTSTCNRVWSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLKKFC

Homology

[Close]

BLAST of Bhi08G000996 vs. TrEMBL
Match: tr|A0A2I4F3S0|A0A2I4F3S0_9ROSI (uncharacterized protein LOC108995232 OS=Juglans regia OX=51240 GN=LOC108995232 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 44  VKSMTTSTCNRV--WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLT 103
           ++S +T    R   W+PP +G   L VD A   +    GLG  +R+  G ++ ++SK   
Sbjct: 119 LRSSSTQNAKRACSWNPPPRGFLKLNVDEAVFSDVRKAGLGVVLRDDKGKLVMVVSKIEN 178

Query: 104 MTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLAL-------NEVGR 160
               P  +ELLA+++G++L++ LG   L VESDC+  +  +N EQ +L        E  R
Sbjct: 179 EVENPSTIELLALLRGLQLIVHLGFSKLLVESDCMFLVQELNNEQDSLLADGNLIMEAKR 238

[Close]

BLAST of Bhi08G000996 vs. TrEMBL
Match: tr|A0A2I4FLN6|A0A2I4FLN6_9ROSI (uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 56  WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAII 115
           W PP  G   L VD A   +    G+   +R+  G V+   +K       P  +ELLA++
Sbjct: 89  WKPPPPGFLKLNVDGAMFADVGKAGIEVVLRDEAGQVVMAATKKEDFVDEPATIELLAVL 148

Query: 116 KGMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLK 158
           +G++  +SLGIPNL VESDCL+ +  +   Q +L+  G  ++
Sbjct: 149 RGLQFFLSLGIPNLVVESDCLVVVQELQDSQESLSSNGNLIQ 190

[Close]

BLAST of Bhi08G000996 vs. TrEMBL
Match: tr|A0A2I4FII8|A0A2I4FII8_9ROSI (uncharacterized protein LOC108999120 OS=Juglans regia OX=51240 GN=LOC108999120 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.7e-08
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 44  VKSMTTSTCNRV--WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLT 103
           ++S +T    R   W+PP +G   L VD    ++    G+G  +R+  G ++   SK   
Sbjct: 111 LRSSSTHNAKRACSWNPPPRGFLKLNVDGVVFLDVRKAGMGVVLRDDKGKLVMAASKIEN 170

Query: 104 MTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLALN 151
               P  +ELLA+++G++L++ LG   L VESDC+L +  +N +Q +L+
Sbjct: 171 AVENPSTIELLALLRGLQLIVHLGFSKLDVESDCILQVQELNNKQDSLS 219

[Close]

BLAST of Bhi08G000996 vs. TrEMBL
Match: tr|A0A2I4H2N1|A0A2I4H2N1_9ROSI (uncharacterized protein LOC109012961 OS=Juglans regia OX=51240 GN=LOC109012961 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.4e-08
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 56  WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAII 115
           W PP  G+  L +D A       +G+G  +R+  G V+   SK       P+ +E LA++
Sbjct: 58  WQPPPAGVLKLNIDGATFHEQCRSGVGMVLRDERGKVLLTASKPKHDVSDPIEIEFLAVL 117

Query: 116 KGMKLVISLGIPNLRVESDCLLAINLINKEQLAL-------NEVGRTLKKF 160
           +G+++   LGI  L VESD LL +  INKEQ ++       +E+ R L++F
Sbjct: 118 RGLQICFPLGISELEVESDSLLVVQKINKEQESMSIWGNLVSEIKRMLQRF 168

[Close]

BLAST of Bhi08G000996 vs. TrEMBL
Match: tr|A0A2I4FKP7|A0A2I4FKP7_9ROSI (uncharacterized protein LOC108999774 OS=Juglans regia OX=51240 GN=LOC108999774 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 44  VKSMTTSTCNRV--WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLT 103
           ++S +T +  RV  W+PP +G   L VD     +    G+G  +R+  G ++   SK   
Sbjct: 135 LRSSSTQSAKRVYSWNPPPRGFLKLNVDGVVFSDVRKAGVGVVLRDDKGKLVMATSKIEN 194

Query: 104 MTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLAL 150
               P  +ELLA+++G++LV+ LG   L VESDC+L +  +  EQ +L
Sbjct: 195 EVDNPSTIELLALLRGLQLVVYLGFSKLVVESDCMLLVQELKNEQDSL 242

[Close]

BLAST of Bhi08G000996 vs. NCBI nr
Match: XP_018826301.1 (PREDICTED: uncharacterized protein LOC108995232 [Juglans regia])

HSP 1 Score: 70.1 bits (170), Expect = 7.8e-09
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 44  VKSMTTSTCNRV--WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLT 103
           ++S +T    R   W+PP +G   L VD A   +    GLG  +R+  G ++ ++SK   
Sbjct: 119 LRSSSTQNAKRACSWNPPPRGFLKLNVDEAVFSDVRKAGLGVVLRDDKGKLVMVVSKIEN 178

Query: 104 MTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLAL-------NEVGR 160
               P  +ELLA+++G++L++ LG   L VESDC+  +  +N EQ +L        E  R
Sbjct: 179 EVENPSTIELLALLRGLQLIVHLGFSKLLVESDCMFLVQELNNEQDSLLADGNLIMEAKR 238

[Close]

BLAST of Bhi08G000996 vs. NCBI nr
Match: XP_018832574.1 (PREDICTED: uncharacterized protein LOC109000195 [Juglans regia])

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 56  WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAII 115
           W PP  G   L VD A   +    G+   +R+  G V+   +K       P  +ELLA++
Sbjct: 89  WKPPPPGFLKLNVDGAMFADVGKAGIEVVLRDEAGQVVMAATKKEDFVDEPATIELLAVL 148

Query: 116 KGMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLK 158
           +G++  +SLGIPNL VESDCL+ +  +   Q +L+  G  ++
Sbjct: 149 RGLQFFLSLGIPNLVVESDCLVVVQELQDSQESLSSNGNLIQ 190

[Close]

BLAST of Bhi08G000996 vs. NCBI nr
Match: ONK66393.1 (uncharacterized protein A4U43_C06F7380 [Asparagus officinalis])

HSP 1 Score: 67.0 bits (162), Expect = 6.6e-08
Identity = 42/157 (26.75%), Postives = 72/157 (45.86%), Query Frame = 0


Query: 1    MWNDINAIINKGSFIS----VEARSKWIRDYLEQVTSVSLPPILNQGVKSMTTSTCNRVW 60
            +W+D N  +   +       +E  S W   +L     V       QG+  +  ++  R+W
Sbjct: 847  IWHDRNKRVYGATVFDAKNLLERASCWWEGFLNAKGMVGCQDGSRQGLNDLREASLIRIW 906

Query: 61   SPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAIIK 120
              PT G   L VD A  ++  + G GA +R+  GS + +L+   T   +PL  E LA++ 
Sbjct: 907  RKPTNGFVKLNVDGALDIHRGIYGTGAVVRDERGSCVGVLATPGTGALSPLTCEALALVN 966

Query: 121  GMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVG 154
            G+   + +G   + +E D L  IN +N  +  L+  G
Sbjct: 967  GLHFCVQVGFKYVVIEGDSLAVINALNGSEEDLSMEG 1003

[Close]

BLAST of Bhi08G000996 vs. NCBI nr
Match: XP_024171847.1 (uncharacterized protein LOC112177831 [Rosa chinensis])

HSP 1 Score: 67.0 bits (162), Expect = 6.6e-08
Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 0


Query: 1   MWNDINAIINKGSFISVEARSKWIRDYLEQVTSVSLPPILNQGVKSMTTSTCNRVWSPPT 60
           +WND           S+    K+++    Q+ S S  P              ++ W+PP 
Sbjct: 244 LWNDTTQTTQAIVVGSLTWYQKFLQVQQMQIQSQSAKP--------------SKYWTPPP 303

Query: 61  KGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAIIKGMKL 120
                + VD A++ +  + G+G  IR  DGS +A  S+S     +P  V+LLAI  G+ L
Sbjct: 304 TQKLKINVDRAFLPSKHIGGIGGFIRRDDGSFVAGFSQSFQYVSSPKQVKLLAIRTGIDL 363

Query: 121 VISLGIPNLRVESDCLLAINLINKEQLALNE 152
           ++ L + N+ VESDC LAI  +      LNE
Sbjct: 364 LLQLRLGNIYVESDCQLAIQEVGANDFELNE 380

[Close]

BLAST of Bhi08G000996 vs. NCBI nr
Match: XP_018831463.1 (PREDICTED: uncharacterized protein LOC108999120 [Juglans regia])

HSP 1 Score: 66.6 bits (161), Expect = 8.6e-08
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 44  VKSMTTSTCNRV--WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLT 103
           ++S +T    R   W+PP +G   L VD    ++    G+G  +R+  G ++   SK   
Sbjct: 111 LRSSSTHNAKRACSWNPPPRGFLKLNVDGVVFLDVRKAGMGVVLRDDKGKLVMAASKIEN 170

Query: 104 MTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLALN 151
               P  +ELLA+++G++L++ LG   L VESDC+L +  +N +Q +L+
Sbjct: 171 AVENPSTIELLALLRGLQLIVHLGFSKLDVESDCILQVQELNNKQDSLS 219

The following BLAST results are available for this feature:

BLAST of Bhi08G000996 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000996 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000996 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4F3S0\|A0A2I4F3S0_9ROSI	5.1e-09	33.60	uncharacterized protein LOC108995232 OS=Juglans regia OX=51240 GN=LOC108995232 P...	[more]
tr\|A0A2I4FLN6\|A0A2I4FLN6_9ROSI	2.0e-08	34.31	uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 P...	[more]
tr\|A0A2I4FII8\|A0A2I4FII8_9ROSI	5.7e-08	32.11	uncharacterized protein LOC108999120 OS=Juglans regia OX=51240 GN=LOC108999120 P...	[more]
tr\|A0A2I4H2N1\|A0A2I4H2N1_9ROSI	7.4e-08	34.23	uncharacterized protein LOC109012961 OS=Juglans regia OX=51240 GN=LOC109012961 P...	[more]
tr\|A0A2I4FKP7\|A0A2I4FKP7_9ROSI	1.7e-07	34.26	uncharacterized protein LOC108999774 OS=Juglans regia OX=51240 GN=LOC108999774 P...	[more]

BLAST of Bhi08G000996 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018826301.1	7.8e-09	33.60	PREDICTED: uncharacterized protein LOC108995232 [Juglans regia]	[more]
XP_018832574.1	3.0e-08	34.31	PREDICTED: uncharacterized protein LOC109000195 [Juglans regia]	[more]
ONK66393.1	6.6e-08	26.75	uncharacterized protein A4U43_C06F7380 [Asparagus officinalis]	[more]
XP_024171847.1	6.6e-08	30.46	uncharacterized protein LOC112177831 [Rosa chinensis]	[more]
XP_018831463.1	8.6e-08	32.11	PREDICTED: uncharacterized protein LOC108999120 [Juglans regia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000996	Bhi08M000996	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 64..158 e-value: 2.3E-9 score: 39.4
None	No IPR available	PFAM	PF13456	RVT_3	coord: 68..151 e-value: 2.6E-14 score: 53.0
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 22..145
None	No IPR available	CDD	cd06222	RNase_H_like	coord: 66..144 e-value: 4.58889E-14 score: 63.8724
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 63..146

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000996	Cucumber (Gy14) v1	cgywgoB346
Bhi08G000996	Cucumber (Gy14) v2	cgybwgoB061
Bhi08G000996	Cucurbita maxima (Rimu)	cmawgoB0278
Bhi08G000996	Cucurbita maxima (Rimu)	cmawgoB0528
Bhi08G000996	Cucurbita moschata (Rifu)	cmowgoB0267
Bhi08G000996	Cucurbita moschata (Rifu)	cmowgoB0526
Bhi08G000996	Cucurbita pepo (Zucchini)	cpewgoB0053
Bhi08G000996	Cucurbita pepo (Zucchini)	cpewgoB0643
Bhi08G000996	Wild cucumber (PI 183967)	cpiwgoB064
Bhi08G000996	Cucumber (Chinese Long) v3	cucwgoB067
Bhi08G000996	Cucumber (Chinese Long) v2	cuwgoB064
Bhi08G000996	Bottle gourd (USVL1VR-Ls)	lsiwgoB248
Bhi08G000996	Melon (DHL92) v3.6.1	medwgoB187
Bhi08G000996	Melon (DHL92) v3.5.1	mewgoB184
Bhi08G000996	Watermelon (Charleston Gray)	wcgwgoB355
Bhi08G000996	Watermelon (97103) v2	wgowmbB485
Bhi08G000996	Watermelon (97103) v1	wgowmB486
Bhi08G000996	Silver-seed gourd	carwgoB0256
Bhi08G000996	Silver-seed gourd	carwgoB0507