Bhi08G000757 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000757
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	beta-(1,2)-xylosyltransferase
Location	chr8 : 29154176 .. 29154349 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCTCCCCGTTCTTGGGAGAGTGCGAATGTGGCCAGAGAGGAATTACATGTCCAGAGGAGGCGATCAGATTGAAGAAGTTATTGGAAAAAAGAAAGAGATGGAGTTGCAACTGAGGTCAAGGATCGGAAGAACCGTTCAAGCTCTATTTTTCAGCACCGTCGAAGCCAAG

mRNA sequence

ATGTCCCTCCCCGTTCTTGGGAGAGTGCGAATGTGGCCAGAGAGGAATTACATGTCCAGAGGAGGCGATCAGATTGAAGAAGTTATTGGAAAAAAGAAAGAGATGGAGTTGCAACTGAGGTCAAGGATCGGAAGAACCGTTCAAGCTCTATTTTTCAGCACCGTCGAAGCCAAG

Coding sequence (CDS)

ATGTCCCTCCCCGTTCTTGGGAGAGTGCGAATGTGGCCAGAGAGGAATTACATGTCCAGAGGAGGCGATCAGATTGAAGAAGTTATTGGAAAAAAGAAAGAGATGGAGTTGCAACTGAGGTCAAGGATCGGAAGAACCGTTCAAGCTCTATTTTTCAGCACCGTCGAAGCCAAG

Protein sequence

MSLPVLGRVRMWPERNYMSRGGDQIEEVIGKKKEMELQLRSRIGRTVQALFFSTVEAK

Homology

[Close]

BLAST of Bhi08G000757 vs. TAIR10
Match: AT5G55500.1 (beta-1,2-xylosyltransferase)

HSP 1 Score: 39.3 bits (90), Expect = 9.7e-04
Identity = 17/29 (58.62%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 9   VRMWPERNYMSRGGDQIEEVIGKKKEMEL 38
           +RM P+R  MSRGG+++EEV+G+K+E EL
Sbjct: 126 LRMVPDRIVMSRGGEKLEEVMGRKEEEEL 154

[Close]

BLAST of Bhi08G000757 vs. TrEMBL
Match: tr|A0A1S3CI41|A0A1S3CI41_CUCME (beta-(1,2)-xylosyltransferase OS=Cucumis melo OX=3656 GN=LOC103501220 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 7   GRVRMWPERNYMSRGGDQIEEVIGKKKEMEL 38
           GRVRMWPER +MSRGG++IEEVIG+K+EMEL
Sbjct: 124 GRVRMWPERIFMSRGGERIEEVIGRKEEMEL 154

[Close]

BLAST of Bhi08G000757 vs. TrEMBL
Match: tr|A0A0A0LGK1|A0A0A0LGK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G764550 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 7   GRVRMWPERNYMSRGGDQIEEVIGKKKEMEL 38
           GRVRMWPER +MSRGG++IEEVIG+K+EMEL
Sbjct: 124 GRVRMWPERIFMSRGGERIEEVIGRKEEMEL 154

[Close]

BLAST of Bhi08G000757 vs. NCBI nr
Match: XP_008462957.1 (PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 7   GRVRMWPERNYMSRGGDQIEEVIGKKKEMEL 38
           GRVRMWPER +MSRGG++IEEVIG+K+EMEL
Sbjct: 124 GRVRMWPERIFMSRGGERIEEVIGRKEEMEL 154

[Close]

BLAST of Bhi08G000757 vs. NCBI nr
Match: XP_004150255.2 (PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis sativus] >KGN59086.1 hypothetical protein Csa_3G764550 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 7   GRVRMWPERNYMSRGGDQIEEVIGKKKEMEL 38
           GRVRMWPER +MSRGG++IEEVIG+K+EMEL
Sbjct: 124 GRVRMWPERIFMSRGGERIEEVIGRKEEMEL 154

The following BLAST results are available for this feature:

BLAST of Bhi08G000757 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000757 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55500.1	9.7e-04	58.62	beta-1,2-xylosyltransferase	[more]

BLAST of Bhi08G000757 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI41\|A0A1S3CI41_CUCME	1.3e-05	80.65	beta-(1,2)-xylosyltransferase OS=Cucumis melo OX=3656 GN=LOC103501220 PE=4 SV=1	[more]
tr\|A0A0A0LGK1\|A0A0A0LGK1_CUCSA	1.3e-05	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G764550 PE=4 SV=1	[more]

BLAST of Bhi08G000757 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462957.1	1.9e-05	80.65	PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis melo]	[more]
XP_004150255.2	1.9e-05	80.65	PREDICTED: beta-(1,2)-xylosyltransferase [Cucumis sativus] >KGN59086.1 hypotheti...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000757	Bhi08M000757	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..58

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000757	Cucumber (Gy14) v1	cgywgoB468
Bhi08G000757	Cucumber (Gy14) v1	cgywgoB469
Bhi08G000757	Cucumber (Gy14) v2	cgybwgoB028
Bhi08G000757	Cucumber (Gy14) v2	cgybwgoB053
Bhi08G000757	Cucurbita maxima (Rimu)	cmawgoB0253
Bhi08G000757	Cucurbita maxima (Rimu)	cmawgoB0532
Bhi08G000757	Cucurbita moschata (Rifu)	cmowgoB0246
Bhi08G000757	Cucurbita moschata (Rifu)	cmowgoB0530
Bhi08G000757	Cucurbita pepo (Zucchini)	cpewgoB0040
Bhi08G000757	Cucurbita pepo (Zucchini)	cpewgoB0651
Bhi08G000757	Wild cucumber (PI 183967)	cpiwgoB031
Bhi08G000757	Wild cucumber (PI 183967)	cpiwgoB056
Bhi08G000757	Cucumber (Chinese Long) v3	cucwgoB034
Bhi08G000757	Cucumber (Chinese Long) v3	cucwgoB058
Bhi08G000757	Cucumber (Chinese Long) v2	cuwgoB031
Bhi08G000757	Cucumber (Chinese Long) v2	cuwgoB056
Bhi08G000757	Bottle gourd (USVL1VR-Ls)	lsiwgoB255
Bhi08G000757	Melon (DHL92) v3.6.1	medwgoB167
Bhi08G000757	Melon (DHL92) v3.5.1	mewgoB164
Bhi08G000757	Watermelon (Charleston Gray)	wcgwgoB236
Bhi08G000757	Watermelon (Charleston Gray)	wcgwgoB240
Bhi08G000757	Watermelon (97103) v2	wgowmbB458
Bhi08G000757	Watermelon (97103) v1	wgowmB497
Bhi08G000757	Silver-seed gourd	carwgoB0484