Bhi08G000744 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000744
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat-containing protein
Location	chr8 : 28651349 .. 28651540 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTAGTGGACTAAGGCTAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATAGAACTGCTGGACTTGATGTACAAAGAGGAAAATTTGAAACTCAATCTGAGAACTTGTAATGTACCCGTCAAAGCATGGTGTAAGAAGAAGAAAATAGCATAG

mRNA sequence

ATGAAGGCTAGTGGACTAAGGCTAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATAGAACTGCTGGACTTGATGTACAAAGAGGAAAATTTGAAACTCAATCTGAGAACTTGTAATGTACCCGTCAAAGCATGGTGTAAGAAGAAGAAAATAGCATAG

Coding sequence (CDS)

ATGAAGGCTAGTGGACTAAGGCTAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATAGAACTGCTGGACTTGATGTACAAAGAGGAAAATTTGAAACTCAATCTGAGAACTTGTAATGTACCCGTCAAAGCATGGTGTAAGAAGAAGAAAATAGCATAG

Protein sequence

MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKKKIA

Homology

[Close]

BLAST of Bhi08G000744 vs. Swiss-Prot
Match: sp|Q8GZ63|PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-15
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAGKPE + ELLDLM +E N+ +  N+RT NV V+AWCK
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200

Query: 61  KKKI 63
           KKK+
Sbjct: 201 KKKV 204

[Close]

BLAST of Bhi08G000744 vs. TAIR10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAGKPE + ELLDLM +E N+ +  N+RT NV V+AWCK
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200

Query: 61  KKKI 63
           KKK+
Sbjct: 201 KKKV 204

[Close]

BLAST of Bhi08G000744 vs. TrEMBL
Match: tr|A0A1Q3DDI4|A0A1Q3DDI4_CEPFO (PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_33943 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 40/62 (64.52%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MKA+GL+  TST+NTLIKGYGIAGKPEE+++LLD+M +E+N+K N+RT NV +++WC KK
Sbjct: 169 MKANGLKPTTSTYNTLIKGYGIAGKPEESVKLLDMMAQEQNVKPNIRTYNVLIRSWCNKK 228

Query: 61  KI 63
            I
Sbjct: 229 NI 230

[Close]

BLAST of Bhi08G000744 vs. TrEMBL
Match: tr|A0A2I0KBX4|A0A2I0KBX4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_013613 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.1e-14
Identity = 39/63 (61.90%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
          MK SG++  TST+NTLIKGYGIAGKPEE+++LL+LM +E N++ NLR+ NV V+AWC K+
Sbjct: 31 MKESGIKSTTSTYNTLIKGYGIAGKPEESMKLLELMSREGNVRPNLRSYNVLVRAWCNKR 90

Query: 61 KIA 64
           +A
Sbjct: 91 NVA 93

[Close]

BLAST of Bhi08G000744 vs. TrEMBL
Match: tr|A0A022QNT3|A0A022QNT3_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006289mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
          MK  G++   STFNTLIKGYGIAGKPEE+++++++M  EEN+K NLRT NV V+AWC KK
Sbjct: 31 MKEYGMKPTISTFNTLIKGYGIAGKPEESLKIMEIMSMEENVKPNLRTYNVLVRAWCNKK 90

Query: 61 KI 63
           I
Sbjct: 91 NI 92

[Close]

BLAST of Bhi08G000744 vs. TrEMBL
Match: tr|A0A087GD63|A0A087GD63_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA8G433500 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-13
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAG+PE + ELLDLM +E N+++  N+RT NV V+AWCK
Sbjct: 146 MKELGLNPTTSTYNTLIKGYGIAGRPERSSELLDLMLEENNVEVRPNIRTFNVLVQAWCK 205

Query: 61  KKKI 63
           KKK+
Sbjct: 206 KKKV 209

[Close]

BLAST of Bhi08G000744 vs. TrEMBL
Match: tr|F4JY71|F4JY71_ARATH (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-13
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAGKPE + ELLDLM +E N+ +  N+RT NV V+AWCK
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200

Query: 61  KKKI 63
           KKK+
Sbjct: 201 KKKV 204

[Close]

BLAST of Bhi08G000744 vs. NCBI nr
Match: GAV90534.1 (PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 40/62 (64.52%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MKA+GL+  TST+NTLIKGYGIAGKPEE+++LLD+M +E+N+K N+RT NV +++WC KK
Sbjct: 169 MKANGLKPTTSTYNTLIKGYGIAGKPEESVKLLDMMAQEQNVKPNIRTYNVLIRSWCNKK 228

Query: 61  KI 63
            I
Sbjct: 229 NI 230

[Close]

BLAST of Bhi08G000744 vs. NCBI nr
Match: PKI66028.1 (hypothetical protein CRG98_013613 [Punica granatum])

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 39/63 (61.90%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
          MK SG++  TST+NTLIKGYGIAGKPEE+++LL+LM +E N++ NLR+ NV V+AWC K+
Sbjct: 31 MKESGIKSTTSTYNTLIKGYGIAGKPEESMKLLELMSREGNVRPNLRSYNVLVRAWCNKR 90

Query: 61 KIA 64
           +A
Sbjct: 91 NVA 93

[Close]

BLAST of Bhi08G000744 vs. NCBI nr
Match: XP_021800229.1 (pentatricopeptide repeat-containing protein At5g21222-like isoform X1 [Prunus avium])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1  MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
          M+ SG +  TSTFNTLIKGYGIAGKPEE+++LL+LM ++EN K N RT N+ V+AWC KK
Sbjct: 21 MEESGCKPTTSTFNTLIKGYGIAGKPEESLKLLELMLQDENTKPNDRTYNMIVRAWCNKK 80

Query: 61 KI 63
          KI
Sbjct: 81 KI 82

[Close]

BLAST of Bhi08G000744 vs. NCBI nr
Match: EYU29264.1 (hypothetical protein MIMGU_mgv1a006289mg [Erythranthe guttata])

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-13
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
          MK  G++   STFNTLIKGYGIAGKPEE+++++++M  EEN+K NLRT NV V+AWC KK
Sbjct: 31 MKEYGMKPTISTFNTLIKGYGIAGKPEESLKIMEIMSMEENVKPNLRTYNVLVRAWCNKK 90

Query: 61 KI 63
           I
Sbjct: 91 NI 92

[Close]

BLAST of Bhi08G000744 vs. NCBI nr
Match: KFK27815.1 (hypothetical protein AALP_AA8G433500 [Arabis alpina])

HSP 1 Score: 82.0 bits (201), Expect = 7.8e-13
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAG+PE + ELLDLM +E N+++  N+RT NV V+AWCK
Sbjct: 146 MKELGLNPTTSTYNTLIKGYGIAGRPERSSELLDLMLEENNVEVRPNIRTFNVLVQAWCK 205

Query: 61  KKKI 63
           KKK+
Sbjct: 206 KKKV 209

The following BLAST results are available for this feature:

BLAST of Bhi08G000744 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GZ63\|PP397_ARATH	3.3e-15	65.63	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX...	[more]

BLAST of Bhi08G000744 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25630.2	1.8e-16	65.63	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Bhi08G000744 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Q3DDI4\|A0A1Q3DDI4_CEPFO	3.2e-15	64.52	PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-con...	[more]
tr\|A0A2I0KBX4\|A0A2I0KBX4_PUNGR	6.1e-14	61.90	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_013613 PE=4 SV=1	[more]
tr\|A0A022QNT3\|A0A022QNT3_ERYGU	1.8e-13	62.90	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006289mg PE...	[more]
tr\|A0A087GD63\|A0A087GD63_ARAAL	5.2e-13	64.06	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA8G433500 PE=4 SV=1	[more]
tr\|F4JY71\|F4JY71_ARATH	6.7e-13	65.63	Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana ...	[more]

BLAST of Bhi08G000744 vs. NCBI nr


Match Name	E-value	Identity	Description
GAV90534.1	4.9e-15	64.52	PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-con...	[more]
PKI66028.1	9.2e-14	61.90	hypothetical protein CRG98_013613 [Punica granatum]	[more]
XP_021800229.1	1.2e-13	66.13	pentatricopeptide repeat-containing protein At5g21222-like isoform X1 [Prunus av...	[more]
EYU29264.1	2.7e-13	62.90	hypothetical protein MIMGU_mgv1a006289mg [Erythranthe guttata]	[more]
KFK27815.1	7.8e-13	64.06	hypothetical protein AALP_AA8G433500 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000744	Bhi08M000744	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 12..45 e-value: 9.2E-8 score: 29.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 10..58 e-value: 2.9E-8 score: 33.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 9..39 score: 8.944
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..63 e-value: 8.5E-11 score: 43.5
None	No IPR available	PANTHER	PTHR24015:SF591	SUBFAMILY NOT NAMED	coord: 1..61
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000744	Cucumber (Gy14) v2	cgybwgoB028
Bhi08G000744	Cucurbita maxima (Rimu)	cmawgoB0253
Bhi08G000744	Cucurbita maxima (Rimu)	cmawgoB0532
Bhi08G000744	Cucurbita moschata (Rifu)	cmowgoB0246
Bhi08G000744	Cucurbita moschata (Rifu)	cmowgoB0530
Bhi08G000744	Cucurbita pepo (Zucchini)	cpewgoB0040
Bhi08G000744	Cucurbita pepo (Zucchini)	cpewgoB0651
Bhi08G000744	Wild cucumber (PI 183967)	cpiwgoB031
Bhi08G000744	Cucumber (Chinese Long) v3	cucwgoB034
Bhi08G000744	Cucumber (Chinese Long) v2	cuwgoB031
Bhi08G000744	Bottle gourd (USVL1VR-Ls)	lsiwgoB255
Bhi08G000744	Melon (DHL92) v3.6.1	medwgoB167
Bhi08G000744	Melon (DHL92) v3.5.1	mewgoB164
Bhi08G000744	Watermelon (Charleston Gray)	wcgwgoB236
Bhi08G000744	Watermelon (Charleston Gray)	wcgwgoB240
Bhi08G000744	Watermelon (97103) v2	wgowmbB458
Bhi08G000744	Watermelon (97103) v1	wgowmB497
Bhi08G000744	Silver-seed gourd	carwgoB1112